RNA–Protein interactions for RNA: ENST00000479656.5

APTX-223, Transcript of aprataxin, human

TSL 1 (best)

Gene APTX, Length 1,881 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
APTX-223	ENST00000479656	NPTX2	P47972	431 aa		12.36	□□□□□ -0.43
APTX-223	ENST00000479656	CACNB2	Q08289	660 aa	Predicted RBP	12.36	□□□□□ -0.43
APTX-223	ENST00000479656	TBC1D8B	Q0IIM8	1120 aa		12.36	□□□□□ -0.43
APTX-223	ENST00000479656	BMT2	Q1RMZ1	405 aa		12.36	□□□□□ -0.43
APTX-223	ENST00000479656	ZCWPW2	Q504Y3	356 aa		12.36	□□□□□ -0.43
APTX-223	ENST00000479656	ZNF296	Q8WUU4	475 aa	Predicted RBP	12.36	□□□□□ -0.43
APTX-223	ENST00000479656	STRA6	Q9BX79	667 aa		12.36	□□□□□ -0.43
APTX-223	ENST00000479656	AP5M1	Q9H0R1	490 aa		12.36	□□□□□ -0.43
APTX-223	ENST00000479656	POLR3F	Q9H1D9	316 aa	Predicted RBP	12.36	□□□□□ -0.43
APTX-223	ENST00000479656	IKZF4	Q9H2S9	585 aa		12.36	□□□□□ -0.43
APTX-223	ENST00000479656	THAP9	Q9H5L6	903 aa		12.36	□□□□□ -0.43
APTX-223	ENST00000479656	NRBP1	Q9UHY1	535 aa		12.36	□□□□□ -0.43
APTX-223	ENST00000479656	TSKS	Q9UJT2	592 aa		12.36	□□□□□ -0.43
APTX-223	ENST00000479656		Q9Y3F1	56 aa		12.36	□□□□□ -0.43
APTX-223	ENST00000479656	ARID2	Q68CP9	1835 aa		12.36	□□□□□ -0.43
APTX-223	ENST00000479656	KCNJ18	B7U540	433 aa		12.36	□□□□□ -0.43
APTX-223	ENST00000479656	INSRR	P14616	1297 aa		12.36	□□□□□ -0.43
APTX-223	ENST00000479656	SMTN	P53814	917 aa		12.36	□□□□□ -0.43
APTX-223	ENST00000479656	NCKAP1L	P55160	1127 aa		12.36	□□□□□ -0.43
APTX-223	ENST00000479656	BEX3	Q00994	111 aa		12.36	□□□□□ -0.43
APTX-223	ENST00000479656	DMP1	Q13316	513 aa	Predicted RBP	12.36	□□□□□ -0.43
APTX-223	ENST00000479656	KCNJ12	Q14500	433 aa		12.36	□□□□□ -0.43
APTX-223	ENST00000479656	TCP11X2	Q5H9J9	407 aa		12.36	□□□□□ -0.43
APTX-223	ENST00000479656	STXBP4	Q6ZWJ1	553 aa		12.36	□□□□□ -0.43
APTX-223	ENST00000479656	HAUS6	Q7Z4H7	955 aa		12.36	□□□□□ -0.43
APTX-223	ENST00000479656	SPC24	Q8NBT2	197 aa		12.36	□□□□□ -0.43
APTX-223	ENST00000479656	NOC3L	Q8WTT2	800 aa	Known RBP	12.36	□□□□□ -0.43
APTX-223	ENST00000479656	NTPCR	Q9BSD7	190 aa	Known RBP	12.36	□□□□□ -0.43
APTX-223	ENST00000479656	SUGCT	Q9HAC7	445 aa		12.36	□□□□□ -0.43
APTX-223	ENST00000479656	C17orf75	Q9HAS0	396 aa		12.36	□□□□□ -0.43
APTX-223	ENST00000479656	KMT5A	Q9NQR1	393 aa		12.36	□□□□□ -0.43
APTX-223	ENST00000479656	PDXK	O00764	312 aa		12.35	□□□□□ -0.43
APTX-223	ENST00000479656	TGFB1I1	O43294	461 aa		12.35	□□□□□ -0.43
APTX-223	ENST00000479656	ADCY3	O60266	1144 aa		12.35	□□□□□ -0.43
APTX-223	ENST00000479656	PPP1R37	O75864	691 aa		12.35	□□□□□ -0.43
APTX-223	ENST00000479656	ARL2	P36404	184 aa		12.35	□□□□□ -0.43
APTX-223	ENST00000479656	RTP1	P59025	263 aa		12.35	□□□□□ -0.43
APTX-223	ENST00000479656	IGBP1	P78318	339 aa		12.35	□□□□□ -0.43
APTX-223	ENST00000479656	FKBP3	Q00688	224 aa	Known RBP	12.35	□□□□□ -0.43
APTX-223	ENST00000479656	DRP2	Q13474	957 aa		12.35	□□□□□ -0.43
APTX-223	ENST00000479656	APTX	Q7Z2E3	356 aa	Known RBP	12.35	□□□□□ -0.43
APTX-223	ENST00000479656	DRC7	Q8IY82	874 aa		12.35	□□□□□ -0.43
APTX-223	ENST00000479656	ZBTB10	Q96DT7	871 aa		12.35	□□□□□ -0.43
APTX-223	ENST00000479656	ERO1A	Q96HE7	468 aa		12.35	□□□□□ -0.43
APTX-223	ENST00000479656	MRFAP1L1	Q96HT8	127 aa		12.35	□□□□□ -0.43
APTX-223	ENST00000479656	IFT74	Q96LB3	600 aa		12.35	□□□□□ -0.43
APTX-223	ENST00000479656	KIFC3	Q9BVG8	833 aa		12.35	□□□□□ -0.43
APTX-223	ENST00000479656	SAGE1	Q9NXZ1	904 aa		12.35	□□□□□ -0.43
APTX-223	ENST00000479656	LIMA1	Q9UHB6	759 aa	Known RBP	12.35	□□□□□ -0.43
APTX-223	ENST00000479656	ZNF215	Q9UL58	517 aa	Predicted RBP	12.35	□□□□□ -0.43
APTX-223	ENST00000479656	TRAF3IP3	Q9Y228	551 aa		12.35	□□□□□ -0.43
APTX-223	ENST00000479656	PPME1	Q9Y570	386 aa		12.35	□□□□□ -0.43
APTX-223	ENST00000479656	MYH11	P35749	1972 aa		12.35	□□□□□ -0.43
APTX-223	ENST00000479656	LRRC10B	A6NIK2	292 aa		12.34	□□□□□ -0.43
APTX-223	ENST00000479656	CLIC2	O15247	247 aa		12.34	□□□□□ -0.43
APTX-223	ENST00000479656	DUSP11	O75319	330 aa	Known RBP	12.34	□□□□□ -0.43
APTX-223	ENST00000479656	GLRA2	P23416	452 aa		12.34	□□□□□ -0.43
APTX-223	ENST00000479656	CPT1A	P50416	773 aa		12.34	□□□□□ -0.43
APTX-223	ENST00000479656	CHMP4BP1	P59074	171 aa		12.34	□□□□□ -0.43
APTX-223	ENST00000479656	GTF2B	Q00403	316 aa		12.34	□□□□□ -0.43
APTX-223	ENST00000479656	SPAG1	Q07617	926 aa		12.34	□□□□□ -0.43
APTX-223	ENST00000479656	MKRN4P	Q13434	485 aa	Predicted RBP	12.34	□□□□□ -0.43
APTX-223	ENST00000479656	ADAM9	Q13443	819 aa		12.34	□□□□□ -0.43
APTX-223	ENST00000479656	KRT31	Q15323	416 aa		12.34	□□□□□ -0.43
APTX-223	ENST00000479656	PTPN21	Q16825	1174 aa		12.34	□□□□□ -0.43
APTX-223	ENST00000479656	ZNF484	Q5JVG2	852 aa		12.34	□□□□□ -0.43
APTX-223	ENST00000479656	FOXR2	Q6PJQ5	311 aa		12.34	□□□□□ -0.43
APTX-223	ENST00000479656	SYCP3	Q8IZU3	236 aa		12.34	□□□□□ -0.43
APTX-223	ENST00000479656	LRRC71	Q8N4P6	559 aa		12.34	□□□□□ -0.43
APTX-223	ENST00000479656	TMEM161B	Q8NDZ6	487 aa		12.34	□□□□□ -0.43
APTX-223	ENST00000479656	RAET1E	Q8TD07	263 aa		12.34	□□□□□ -0.43
APTX-223	ENST00000479656	ASAP3	Q8TDY4	903 aa		12.34	□□□□□ -0.43
APTX-223	ENST00000479656	SPIRE2	Q8WWL2	714 aa		12.34	□□□□□ -0.43
APTX-223	ENST00000479656	VPS16	Q9H269	839 aa		12.34	□□□□□ -0.43
APTX-223	ENST00000479656	ST6GALNAC4	Q9H4F1	302 aa		12.34	□□□□□ -0.43
APTX-223	ENST00000479656	TYW1	Q9NV66	732 aa	Known RBP	12.34	□□□□□ -0.43
APTX-223	ENST00000479656	MAGEC2	Q9UBF1	373 aa	Predicted RBP	12.34	□□□□□ -0.43
APTX-223	ENST00000479656	IGKV6-21	A0A0C4DH24	114 aa		12.34	□□□□□ -0.43
APTX-223	ENST00000479656	SEPT4	O43236	478 aa		12.34	□□□□□ -0.43
APTX-223	ENST00000479656	CBFA2T2	O43439	604 aa		12.34	□□□□□ -0.43
APTX-223	ENST00000479656	CALU	O43852	315 aa	Predicted RBP	12.34	□□□□□ -0.43
APTX-223	ENST00000479656	FGFR1OP	O95684	399 aa	Known RBP	12.34	□□□□□ -0.43
APTX-223	ENST00000479656	GNRH1	P01148	92 aa		12.34	□□□□□ -0.43
APTX-223	ENST00000479656	MYL3	P08590	195 aa		12.34	□□□□□ -0.43
APTX-223	ENST00000479656	KLRC1	P26715	233 aa		12.34	□□□□□ -0.43
APTX-223	ENST00000479656	CCND3	P30281	292 aa	Predicted RBP	12.34	□□□□□ -0.43
APTX-223	ENST00000479656	ALCAM	Q13740	583 aa		12.34	□□□□□ -0.43
APTX-223	ENST00000479656	NR1I3	Q14994	352 aa		12.34	□□□□□ -0.43
APTX-223	ENST00000479656	IER5	Q5VY09	327 aa		12.34	□□□□□ -0.43
APTX-223	ENST00000479656	EFCAB12	Q6NXP0	572 aa		12.34	□□□□□ -0.43
APTX-223	ENST00000479656	LRRC55	Q6ZSA7	311 aa		12.34	□□□□□ -0.43
APTX-223	ENST00000479656	ARHGAP30	Q7Z6I6	1101 aa	Predicted RBP	12.34	□□□□□ -0.43
APTX-223	ENST00000479656	EXOC8	Q8IYI6	725 aa		12.34	□□□□□ -0.43
APTX-223	ENST00000479656	ANKRD20A12P	Q8NF67	263 aa		12.34	□□□□□ -0.43
APTX-223	ENST00000479656	PPP1R13L	Q8WUF5	828 aa		12.34	□□□□□ -0.43
APTX-223	ENST00000479656	PRPF31	Q8WWY3	499 aa	Known RBP	12.34	□□□□□ -0.43
APTX-223	ENST00000479656	CNOT6L	Q96LI5	555 aa	Known RBP	12.34	□□□□□ -0.43
APTX-223	ENST00000479656	ACCS	Q96QU6	501 aa		12.34	□□□□□ -0.43
APTX-223	ENST00000479656	TAB2	Q9NYJ8	693 aa		12.34	□□□□□ -0.43
APTX-223	ENST00000479656	ZMYM2	Q9UBW7	1377 aa		12.33	□□□□□ -0.44

Retrieved 100 of 20,778 RNA–protein pairs in 30 ms