RNA–Protein interactions for RNA: ENST00000479544.6

USP42-206, Transcript of ubiquitin specific peptidase 42, humanhuman

TSL 1 (best)

Gene USP42, Length 4,286 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP42-206ENST00000479544 GCLMP48507 274 aa14.55□□□□□ -0.08
USP42-206ENST00000479544 PDE1CQ14123 709 aaPredicted RBP14.55□□□□□ -0.08
USP42-206ENST00000479544 PKN1Q16512 942 aa14.55□□□□□ -0.08
USP42-206ENST00000479544 NT5DC1Q5TFE4 455 aa14.55□□□□□ -0.08
USP42-206ENST00000479544 TTBK2Q6IQ55 1244 aa14.55□□□□□ -0.08
USP42-206ENST00000479544 DGKHQ86XP1 1220 aa14.55□□□□□ -0.08
USP42-206ENST00000479544 MED15Q96RN5 788 aa14.55□□□□□ -0.08
USP42-206ENST00000479544 ERGIC2Q96RQ1 377 aa14.55□□□□□ -0.08
USP42-206ENST00000479544 ISCUQ9H1K1 167 aa14.55□□□□□ -0.08
USP42-206ENST00000479544 SEMA6BQ9H3T3 888 aa14.55□□□□□ -0.08
USP42-206ENST00000479544 GRID2IPA4D2P6 1211 aa14.55□□□□□ -0.08
USP42-206ENST00000479544 FAM196BA6NMK8 535 aa14.55□□□□□ -0.08
USP42-206ENST00000479544 GOLGA8RI6L899 631 aa14.55□□□□□ -0.08
USP42-206ENST00000479544 SSTR3P32745 418 aaPredicted RBP14.55□□□□□ -0.08
USP42-206ENST00000479544 ERVK-9P63128 1117 aa14.55□□□□□ -0.08
USP42-206ENST00000479544 STRN3Q13033 797 aa14.55□□□□□ -0.08
USP42-206ENST00000479544 KYNUQ16719 465 aa14.55□□□□□ -0.08
USP42-206ENST00000479544 LRRC36Q1X8D7 754 aa14.55□□□□□ -0.08
USP42-206ENST00000479544 CEP128Q6ZU80 1094 aa14.55□□□□□ -0.08
USP42-206ENST00000479544 ARHGAP24Q8N264 748 aa14.55□□□□□ -0.08
USP42-206ENST00000479544 EPS8L3Q8TE67 593 aaKnown RBP14.55□□□□□ -0.08
USP42-206ENST00000479544 CELF1Q92879 486 aaKnown RBP14.55□□□□□ -0.08
USP42-206ENST00000479544 BARHL2Q9NY43 387 aa14.55□□□□□ -0.08
USP42-206ENST00000479544 LEMD3Q9Y2U8 911 aa14.55□□□□□ -0.08
USP42-206ENST00000479544 UCHL3P15374 230 aa14.54□□□□□ -0.08
USP42-206ENST00000479544 PSMC4P43686 418 aa14.54□□□□□ -0.08
USP42-206ENST00000479544 NAB2Q15742 525 aa14.54□□□□□ -0.08
USP42-206ENST00000479544 GSDMBQ8TAX9 411 aa14.54□□□□□ -0.08
USP42-206ENST00000479544 FBXO25Q8TCJ0 367 aa14.54□□□□□ -0.08
USP42-206ENST00000479544 ERP27Q96DN0 273 aa14.54□□□□□ -0.08
USP42-206ENST00000479544 TXNDC16Q9P2K2 825 aa14.54□□□□□ -0.08
USP42-206ENST00000479544 CCNL1Q9UK58 526 aaPredicted RBP14.54□□□□□ -0.08
USP42-206ENST00000479544 PVALEFA0A1B0GWK0 134 aa14.54□□□□□ -0.08
USP42-206ENST00000479544 UBOX5O94941 541 aa14.54□□□□□ -0.08
USP42-206ENST00000479544 UPP2O95045 317 aa14.54□□□□□ -0.08
USP42-206ENST00000479544 NR3C1P04150 777 aa14.54□□□□□ -0.08
USP42-206ENST00000479544 SKIP12755 728 aa14.54□□□□□ -0.08
USP42-206ENST00000479544 CDK8P49336 464 aa14.54□□□□□ -0.08
USP42-206ENST00000479544 KIAA1755Q5JYT7 1200 aa14.54□□□□□ -0.08
USP42-206ENST00000479544 WDR78Q5VTH9 848 aa14.54□□□□□ -0.08
USP42-206ENST00000479544 SPATA21Q7Z572 469 aa14.54□□□□□ -0.08
USP42-206ENST00000479544 PAF1Q8N7H5 531 aa14.54□□□□□ -0.08
USP42-206ENST00000479544 G3BP2Q9UN86 482 aaKnown RBP14.54□□□□□ -0.08
USP42-206ENST00000479544 SSU72P8A0A1W2PR75 194 aa14.54□□□□□ -0.08
USP42-206ENST00000479544 TMEM120BA0PK00 339 aa14.54□□□□□ -0.08
USP42-206ENST00000479544 PCP11498 1178 aaKnown RBP14.54□□□□□ -0.08
USP42-206ENST00000479544 TRIM28Q13263 835 aaKnown RBP14.54□□□□□ -0.08
USP42-206ENST00000479544 PPP2R5CQ13362 524 aa14.54□□□□□ -0.08
USP42-206ENST00000479544 SMAD1Q15797 465 aaKnown RBP14.54□□□□□ -0.08
USP42-206ENST00000479544 LIN9Q5TKA1 542 aa14.54□□□□□ -0.08
USP42-206ENST00000479544 KIAA0825Q8IV33 1275 aa14.54□□□□□ -0.08
USP42-206ENST00000479544 CCHCR1Q8TD31 782 aa14.54□□□□□ -0.08
USP42-206ENST00000479544 MAML1Q92585 1016 aa14.54□□□□□ -0.08
USP42-206ENST00000479544 PRCCQ92733 491 aaPredicted RBP14.54□□□□□ -0.08
USP42-206ENST00000479544 BRIP1Q9BX63 1249 aa14.54□□□□□ -0.08
USP42-206ENST00000479544 SAYSD1Q9NPB0 183 aa14.54□□□□□ -0.08
USP42-206ENST00000479544 USP40Q9NVE5 1235 aa14.54□□□□□ -0.08
USP42-206ENST00000479544 CNTNAP5Q8WYK1 1306 aa14.54□□□□□ -0.08
USP42-206ENST00000479544 SLIT2O94813 1529 aa14.53□□□□□ -0.08
USP42-206ENST00000479544 ATMINO43313 823 aaPredicted RBP14.53□□□□□ -0.08
USP42-206ENST00000479544 ESRRAP11474 423 aaPredicted RBP14.53□□□□□ -0.08
USP42-206ENST00000479544 YWHAGP61981 247 aaKnown RBP eCLIP14.53□□□□□ -0.08
USP42-206ENST00000479544 EPM2AIP1Q7L775 607 aaPredicted RBP14.53□□□□□ -0.08
USP42-206ENST00000479544 SLC35G2Q8TBE7 412 aa14.53□□□□□ -0.08
USP42-206ENST00000479544 CEP95Q96GE4 821 aa14.53□□□□□ -0.08
USP42-206ENST00000479544 VCX3BQ9H321 246 aa14.53□□□□□ -0.08
USP42-206ENST00000479544 TMBIM4Q9HC24 238 aa14.53□□□□□ -0.08
USP42-206ENST00000479544 SGK1O00141 431 aa14.53□□□□□ -0.08
USP42-206ENST00000479544 MAPK13O15264 365 aa14.53□□□□□ -0.08
USP42-206ENST00000479544 ONECUT3O60422 494 aaPredicted RBP14.53□□□□□ -0.08
USP42-206ENST00000479544 TRAPPC3LQ5T215 181 aa14.53□□□□□ -0.08
USP42-206ENST00000479544 GBP7Q8N8V2 638 aaPredicted RBP14.53□□□□□ -0.08
USP42-206ENST00000479544 USP15Q9Y4E8 981 aaPredicted RBP14.53□□□□□ -0.08
USP42-206ENST00000479544 SLC4A7Q9Y6M7 1214 aa14.53□□□□□ -0.08
USP42-206ENST00000479544 ERVV-1B6SEH8 477 aa14.53□□□□□ -0.08
USP42-206ENST00000479544 GYG2O15488 501 aa14.53□□□□□ -0.08
USP42-206ENST00000479544 BFSP1Q12934 665 aa14.53□□□□□ -0.08
USP42-206ENST00000479544 DRP2Q13474 957 aa14.53□□□□□ -0.08
USP42-206ENST00000479544 BBS9Q3SYG4 887 aa14.53□□□□□ -0.08
USP42-206ENST00000479544 C4orf33Q8N1A6 199 aa14.53□□□□□ -0.08
USP42-206ENST00000479544 NKX2-3Q8TAU0 364 aa14.53□□□□□ -0.08
USP42-206ENST00000479544 TTC17Q96AE7 1141 aa14.53□□□□□ -0.08
USP42-206ENST00000479544 DUSP9Q99956 384 aaKnown RBP14.53□□□□□ -0.08
USP42-206ENST00000479544 KIF20BQ96Q89 1820 aa14.53□□□□□ -0.08
USP42-206ENST00000479544 PSMD2Q13200 908 aa14.52□□□□□ -0.08
USP42-206ENST00000479544 TRIM59Q8IWR1 403 aa14.52□□□□□ -0.08
USP42-206ENST00000479544 MAK16Q9BXY0 300 aaKnown RBP14.52□□□□□ -0.08
USP42-206ENST00000479544 TYW1Q9NV66 732 aaKnown RBP14.52□□□□□ -0.08
USP42-206ENST00000479544 GLIS3Q8NEA6 775 aa14.52□□□□□ -0.08
USP42-206ENST00000479544 SLITRK6Q9H5Y7 841 aa14.52□□□□□ -0.08
USP42-206ENST00000479544 OSGEPQ9NPF4 335 aa14.52□□□□□ -0.08
USP42-206ENST00000479544 DLGAP2Q9P1A6 1054 aa14.52□□□□□ -0.08
USP42-206ENST00000479544 NALCNQ8IZF0 1738 aa14.52□□□□□ -0.08
USP42-206ENST00000479544 AGPSO00116 658 aa14.52□□□□□ -0.09
USP42-206ENST00000479544 STAMBPO95630 424 aa14.52□□□□□ -0.09
USP42-206ENST00000479544 ANKRD20A8PQ5CZ79 823 aa14.52□□□□□ -0.09
USP42-206ENST00000479544 FAM102BQ5T8I3 360 aa14.52□□□□□ -0.09
USP42-206ENST00000479544 GGA1Q9UJY5 639 aa14.52□□□□□ -0.09
USP42-206ENST00000479544 RPS6KA5O75582 802 aa14.52□□□□□ -0.09
USP42-206ENST00000479544 IFI35P80217 286 aaPredicted RBP14.52□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms