RNA–Protein interactions for RNA: ENST00000475218.2

UPF3A-204, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 1 (best)

Gene UPF3A, Length 1,791 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-204ENST00000475218 KRT2P35908 639 aa15.85■□□□□ 0.13
UPF3A-204ENST00000475218 TIGD5Q53EQ6 642 aa15.85■□□□□ 0.13
UPF3A-204ENST00000475218 MAP7D2Q96T17 732 aa15.85■□□□□ 0.13
UPF3A-204ENST00000475218 C1orf112Q9NSG2 853 aa15.85■□□□□ 0.13
UPF3A-204ENST00000475218 ARID2Q68CP9 1835 aa15.85■□□□□ 0.13
UPF3A-204ENST00000475218 DENND3A2RUS2 1198 aa15.85■□□□□ 0.13
UPF3A-204ENST00000475218 TBX3O15119 743 aa15.85■□□□□ 0.13
UPF3A-204ENST00000475218 MMP1P03956 469 aa15.85■□□□□ 0.13
UPF3A-204ENST00000475218 KCNA5P22460 613 aa15.85■□□□□ 0.13
UPF3A-204ENST00000475218 TMOD1P28289 359 aa15.85■□□□□ 0.13
UPF3A-204ENST00000475218 FOSBP53539 338 aa15.85■□□□□ 0.13
UPF3A-204ENST00000475218 NPEPPSP55786 919 aa15.85■□□□□ 0.13
UPF3A-204ENST00000475218 PSMC5P62195 406 aa15.85■□□□□ 0.13
UPF3A-204ENST00000475218 LEXMQ3ZCV2 418 aa15.85■□□□□ 0.13
UPF3A-204ENST00000475218 FAM43BQ6ZT52 329 aaPredicted RBP15.85■□□□□ 0.13
UPF3A-204ENST00000475218 SPPL3Q8TCT6 385 aa15.85■□□□□ 0.13
UPF3A-204ENST00000475218 NEK9Q8TD19 979 aa15.85■□□□□ 0.13
UPF3A-204ENST00000475218 WASF1Q92558 559 aa15.85■□□□□ 0.13
UPF3A-204ENST00000475218 P2RX5Q93086 422 aa15.85■□□□□ 0.13
UPF3A-204ENST00000475218 PLVAPQ9BX97 442 aa15.85■□□□□ 0.13
UPF3A-204ENST00000475218 NSUN3Q9H649 340 aaKnown RBP15.85■□□□□ 0.13
UPF3A-204ENST00000475218 CD320Q9NPF0 282 aa15.85■□□□□ 0.13
UPF3A-204ENST00000475218 RWDD3Q9Y3V2 267 aa15.85■□□□□ 0.13
UPF3A-204ENST00000475218 DDX11L8A8MPP1 907 aa15.84■□□□□ 0.13
UPF3A-204ENST00000475218 MAFO75444 373 aaPredicted RBP15.84■□□□□ 0.13
UPF3A-204ENST00000475218 GTF2F1P35269 517 aaKnown RBP eCLIP15.84■□□□□ 0.13
UPF3A-204ENST00000475218 LTBRP36941 435 aa15.84■□□□□ 0.13
UPF3A-204ENST00000475218 QARSP47897 775 aaKnown RBP15.84■□□□□ 0.13
UPF3A-204ENST00000475218 HYAL1Q12794 435 aa15.84■□□□□ 0.13
UPF3A-204ENST00000475218 CTC1Q2NKJ3 1217 aa15.84■□□□□ 0.13
UPF3A-204ENST00000475218 KLHL23Q8NBE8 558 aa15.84■□□□□ 0.13
UPF3A-204ENST00000475218 LMAN2LQ9H0V9 348 aa15.84■□□□□ 0.13
UPF3A-204ENST00000475218 TMEM161AQ9NX61 479 aa15.84■□□□□ 0.13
UPF3A-204ENST00000475218 RGL1Q9NZL6 768 aa15.84■□□□□ 0.13
UPF3A-204ENST00000475218 PCDHB7Q9Y5E2 793 aa15.84■□□□□ 0.13
UPF3A-204ENST00000475218 ZBTB39O15060 712 aa15.83■□□□□ 0.12
UPF3A-204ENST00000475218 ATF7P17544 494 aaPredicted RBP15.83■□□□□ 0.12
UPF3A-204ENST00000475218 IRS1P35568 1242 aa15.83■□□□□ 0.12
UPF3A-204ENST00000475218 LRRC55Q6ZSA7 311 aa15.83■□□□□ 0.12
UPF3A-204ENST00000475218 KSR1Q8IVT5 923 aa15.83■□□□□ 0.12
UPF3A-204ENST00000475218 DIS3L2Q8IYB7 885 aaKnown RBP15.83■□□□□ 0.12
UPF3A-204ENST00000475218 KHSRPQ92945 711 aaKnown RBP eCLIP15.83■□□□□ 0.12
UPF3A-204ENST00000475218 CWH43Q9H720 699 aa15.83■□□□□ 0.12
UPF3A-204ENST00000475218 ELAC1Q9H777 363 aaKnown RBP15.83■□□□□ 0.12
UPF3A-204ENST00000475218 LRFN2Q9ULH4 789 aa15.83■□□□□ 0.12
UPF3A-204ENST00000475218 PCDHGC5Q9Y5F6 944 aa15.83■□□□□ 0.12
UPF3A-204ENST00000475218 A0A087WZ62 844 aa15.82■□□□□ 0.12
UPF3A-204ENST00000475218 TBKBP1A7MCY6 615 aa15.82■□□□□ 0.12
UPF3A-204ENST00000475218 CSPG5O95196 566 aa15.82■□□□□ 0.12
UPF3A-204ENST00000475218 DLX2Q07687 328 aaPredicted RBP15.82■□□□□ 0.12
UPF3A-204ENST00000475218 ODR4Q5SWX8 454 aa15.82■□□□□ 0.12
UPF3A-204ENST00000475218 ZNF598Q86UK7 904 aaKnown RBP15.82■□□□□ 0.12
UPF3A-204ENST00000475218 IL27Q8NEV9 243 aa15.82■□□□□ 0.12
UPF3A-204ENST00000475218 PABPC5Q96DU9 382 aaKnown RBP15.82■□□□□ 0.12
UPF3A-204ENST00000475218 CASD1Q96PB1 797 aa15.82■□□□□ 0.12
UPF3A-204ENST00000475218 FDXACB1Q9BRP7 624 aaPredicted RBP15.82■□□□□ 0.12
UPF3A-204ENST00000475218 CYP26B1Q9NR63 512 aa15.82■□□□□ 0.12
UPF3A-204ENST00000475218 TRIOO75962 3097 aa15.82■□□□□ 0.12
UPF3A-204ENST00000475218 H3BQ06 376 aaPredicted RBP15.82■□□□□ 0.12
UPF3A-204ENST00000475218 P4HBP07237 508 aaKnown RBP15.82■□□□□ 0.12
UPF3A-204ENST00000475218 EPHA7Q15375 998 aa15.82■□□□□ 0.12
UPF3A-204ENST00000475218 NCAPH2Q6IBW4 605 aa15.82■□□□□ 0.12
UPF3A-204ENST00000475218 ADGRD2Q7Z7M1 963 aa15.82■□□□□ 0.12
UPF3A-204ENST00000475218 ECHDC2Q86YB7 292 aa15.82■□□□□ 0.12
UPF3A-204ENST00000475218 ZNF710Q8N1W2 664 aa15.82■□□□□ 0.12
UPF3A-204ENST00000475218 NLRP7Q8WX94 980 aa15.82■□□□□ 0.12
UPF3A-204ENST00000475218 DYDC2Q96IM9 177 aa15.82■□□□□ 0.12
UPF3A-204ENST00000475218 MTMR9Q96QG7 549 aa15.82■□□□□ 0.12
UPF3A-204ENST00000475218 LXNQ9BS40 222 aa15.82■□□□□ 0.12
UPF3A-204ENST00000475218 TYW1Q9NV66 732 aaKnown RBP15.82■□□□□ 0.12
UPF3A-204ENST00000475218 LIMCH1Q9UPQ0 1083 aa15.82■□□□□ 0.12
UPF3A-204ENST00000475218 LINC01565O15544 149 aa15.81■□□□□ 0.12
UPF3A-204ENST00000475218 IL9P15248 144 aa15.81■□□□□ 0.12
UPF3A-204ENST00000475218 GUCY1B3Q02153 619 aa15.81■□□□□ 0.12
UPF3A-204ENST00000475218 NAALADL2Q58DX5 795 aa15.81■□□□□ 0.12
UPF3A-204ENST00000475218 CLLU1OSQ5K130 101 aa15.81■□□□□ 0.12
UPF3A-204ENST00000475218 CCDC83Q8IWF9 413 aa15.81■□□□□ 0.12
UPF3A-204ENST00000475218 C4orf19Q8IY42 314 aa15.81■□□□□ 0.12
UPF3A-204ENST00000475218 NAP1L4Q99733 375 aaKnown RBP15.81■□□□□ 0.12
UPF3A-204ENST00000475218 DHX33Q9H6R0 707 aaKnown RBP15.81■□□□□ 0.12
UPF3A-204ENST00000475218 IFT122Q9HBG6 1241 aa15.81■□□□□ 0.12
UPF3A-204ENST00000475218 SUCLA2Q9P2R7 463 aaPredicted RBP15.81■□□□□ 0.12
UPF3A-204ENST00000475218 GRXCR2A6NFK2 248 aa15.8■□□□□ 0.12
UPF3A-204ENST00000475218 SLITRK3O94933 977 aa15.8■□□□□ 0.12
UPF3A-204ENST00000475218 CYP4A11Q02928 519 aa15.8■□□□□ 0.12
UPF3A-204ENST00000475218 CTTNQ14247 550 aaKnown RBP15.8■□□□□ 0.12
UPF3A-204ENST00000475218 RHPN2Q8IUC4 686 aa15.8■□□□□ 0.12
UPF3A-204ENST00000475218 POF1BQ8WVV4 589 aa15.8■□□□□ 0.12
UPF3A-204ENST00000475218 HSD17B14Q9BPX1 270 aa15.8■□□□□ 0.12
UPF3A-204ENST00000475218 TMEM60Q9H2L4 133 aa15.8■□□□□ 0.12
UPF3A-204ENST00000475218 ATP6V0A4Q9HBG4 840 aa15.8■□□□□ 0.12
UPF3A-204ENST00000475218 A0A0U1RQF3 1178 aa15.8■□□□□ 0.12
UPF3A-204ENST00000475218 TBX10O75333 385 aa15.8■□□□□ 0.12
UPF3A-204ENST00000475218 PTCRAQ6ISU1 281 aaPredicted RBP15.8■□□□□ 0.12
UPF3A-204ENST00000475218 SLFN12Q8IYM2 578 aa15.8■□□□□ 0.12
UPF3A-204ENST00000475218 COLGALT1Q8NBJ5 622 aa15.8■□□□□ 0.12
UPF3A-204ENST00000475218 CEP170P1Q96L14 293 aa15.8■□□□□ 0.12
UPF3A-204ENST00000475218 GCOM2Q9BZD3 368 aaPredicted RBP15.8■□□□□ 0.12
UPF3A-204ENST00000475218 TMEM117Q9H0C3 514 aa15.8■□□□□ 0.12
UPF3A-204ENST00000475218 EIF5BO60841 1220 aaKnown RBP15.79■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 18.4 ms