RNA–Protein interactions for RNA: ENST00000474432.1

COL7A1-209, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 3

Gene COL7A1, Length 728 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-209ENST00000474432 SPPL3Q8TCT6 385 aa20.88■□□□□ 0.93
COL7A1-209ENST00000474432 HCSTQ9UBK5 93 aa20.88■□□□□ 0.93
COL7A1-209ENST00000474432 LRFN2Q9ULH4 789 aa20.88■□□□□ 0.93
COL7A1-209ENST00000474432 PCDHB7Q9Y5E2 793 aa20.88■□□□□ 0.93
COL7A1-209ENST00000474432 DENND3A2RUS2 1198 aa20.87■□□□□ 0.93
COL7A1-209ENST00000474432 WNT7AO00755 349 aa20.87■□□□□ 0.93
COL7A1-209ENST00000474432 TBX3O15119 743 aa20.87■□□□□ 0.93
COL7A1-209ENST00000474432 CCNT1O60563 726 aaKnown RBP20.87■□□□□ 0.93
COL7A1-209ENST00000474432 LTBRP36941 435 aa20.87■□□□□ 0.93
COL7A1-209ENST00000474432 PSMC5P62195 406 aa20.87■□□□□ 0.93
COL7A1-209ENST00000474432 POTEDQ86YR6 584 aa20.87■□□□□ 0.93
COL7A1-209ENST00000474432 ZNF710Q8N1W2 664 aa20.87■□□□□ 0.93
COL7A1-209ENST00000474432 ZNF579Q8NAF0 562 aaKnown RBP20.87■□□□□ 0.93
COL7A1-209ENST00000474432 KLHL23Q8NBE8 558 aa20.87■□□□□ 0.93
COL7A1-209ENST00000474432 WASF1Q92558 559 aa20.87■□□□□ 0.93
COL7A1-209ENST00000474432 PABPC5Q96DU9 382 aaKnown RBP20.87■□□□□ 0.93
COL7A1-209ENST00000474432 ELAC1Q9H777 363 aaKnown RBP20.87■□□□□ 0.93
COL7A1-209ENST00000474432 CD320Q9NPF0 282 aa20.87■□□□□ 0.93
COL7A1-209ENST00000474432 TMEM161AQ9NX61 479 aa20.87■□□□□ 0.93
COL7A1-209ENST00000474432 DDX11L8A8MPP1 907 aa20.86■□□□□ 0.93
COL7A1-209ENST00000474432 MAFO75444 373 aaPredicted RBP20.86■□□□□ 0.93
COL7A1-209ENST00000474432 FGFR1P11362 822 aa20.86■□□□□ 0.93
COL7A1-209ENST00000474432 IBSPP21815 317 aaPredicted RBP20.86■□□□□ 0.93
COL7A1-209ENST00000474432 FGFR4P22455 802 aa20.86■□□□□ 0.93
COL7A1-209ENST00000474432 HYAL1Q12794 435 aa20.86■□□□□ 0.93
COL7A1-209ENST00000474432 CTC1Q2NKJ3 1217 aa20.86■□□□□ 0.93
COL7A1-209ENST00000474432 NAALADL2Q58DX5 795 aa20.86■□□□□ 0.93
COL7A1-209ENST00000474432 PLA2G4FQ68DD2 849 aa20.86■□□□□ 0.93
COL7A1-209ENST00000474432 BTBD18B2RXH4 712 aa20.85■□□□□ 0.93
COL7A1-209ENST00000474432 CSDE1O75534 798 aaKnown RBP20.85■□□□□ 0.93
COL7A1-209ENST00000474432 GTF2F1P35269 517 aaKnown RBP eCLIP20.85■□□□□ 0.93
COL7A1-209ENST00000474432 IRS1P35568 1242 aa20.85■□□□□ 0.93
COL7A1-209ENST00000474432 KRT2P35908 639 aa20.85■□□□□ 0.93
COL7A1-209ENST00000474432 QARSP47897 775 aaKnown RBP20.85■□□□□ 0.93
COL7A1-209ENST00000474432 NPEPPSP55786 919 aa20.85■□□□□ 0.93
COL7A1-209ENST00000474432 KIF2CQ99661 725 aa20.85■□□□□ 0.93
COL7A1-209ENST00000474432 CWH43Q9H720 699 aa20.85■□□□□ 0.93
COL7A1-209ENST00000474432 ARID2Q68CP9 1835 aa20.84■□□□□ 0.93
COL7A1-209ENST00000474432 TBKBP1A7MCY6 615 aa20.84■□□□□ 0.93
COL7A1-209ENST00000474432 H3BQ06 376 aaPredicted RBP20.84■□□□□ 0.93
COL7A1-209ENST00000474432 IL9P15248 144 aa20.84■□□□□ 0.93
COL7A1-209ENST00000474432 EPHA7Q15375 998 aa20.84■□□□□ 0.93
COL7A1-209ENST00000474432 LRRC55Q6ZSA7 311 aa20.84■□□□□ 0.93
COL7A1-209ENST00000474432 KHSRPQ92945 711 aaKnown RBP eCLIP20.84■□□□□ 0.93
COL7A1-209ENST00000474432 ATP6V0A4Q9HBG4 840 aa20.84■□□□□ 0.93
COL7A1-209ENST00000474432 CYP26B1Q9NR63 512 aa20.84■□□□□ 0.93
COL7A1-209ENST00000474432 TYW1Q9NV66 732 aaKnown RBP20.84■□□□□ 0.93
COL7A1-209ENST00000474432 A0A087WZ62 844 aa20.83■□□□□ 0.93
COL7A1-209ENST00000474432 GRXCR2A6NFK2 248 aa20.83■□□□□ 0.93
COL7A1-209ENST00000474432 P4HBP07237 508 aaKnown RBP20.83■□□□□ 0.93
COL7A1-209ENST00000474432 ATF7P17544 494 aaPredicted RBP20.83■□□□□ 0.93
COL7A1-209ENST00000474432 DLX2Q07687 328 aaPredicted RBP20.83■□□□□ 0.93
COL7A1-209ENST00000474432 C8orf34Q49A92 452 aa20.83■□□□□ 0.93
COL7A1-209ENST00000474432 ZNF598Q86UK7 904 aaKnown RBP20.83■□□□□ 0.93
COL7A1-209ENST00000474432 ECHDC2Q86YB7 292 aa20.83■□□□□ 0.93
COL7A1-209ENST00000474432 KSR1Q8IVT5 923 aa20.83■□□□□ 0.93
COL7A1-209ENST00000474432 POF1BQ8WVV4 589 aa20.83■□□□□ 0.93
COL7A1-209ENST00000474432 NLRP7Q8WX94 980 aa20.83■□□□□ 0.93
COL7A1-209ENST00000474432 CASD1Q96PB1 797 aa20.83■□□□□ 0.93
COL7A1-209ENST00000474432 NAP1L4Q99733 375 aaKnown RBP20.83■□□□□ 0.93
COL7A1-209ENST00000474432 FDXACB1Q9BRP7 624 aaPredicted RBP20.83■□□□□ 0.93
COL7A1-209ENST00000474432 RGL1Q9NZL6 768 aa20.83■□□□□ 0.93
COL7A1-209ENST00000474432 SUCLA2Q9P2R7 463 aaPredicted RBP20.83■□□□□ 0.93
COL7A1-209ENST00000474432 ZBTB39O15060 712 aa20.82■□□□□ 0.92
COL7A1-209ENST00000474432 EIF5BO60841 1220 aaKnown RBP20.82■□□□□ 0.92
COL7A1-209ENST00000474432 CSPG5O95196 566 aa20.82■□□□□ 0.92
COL7A1-209ENST00000474432 CENPBP07199 599 aaPredicted RBP20.82■□□□□ 0.92
COL7A1-209ENST00000474432 FOSBP53539 338 aa20.82■□□□□ 0.92
COL7A1-209ENST00000474432 PTCRAQ6ISU1 281 aaPredicted RBP20.82■□□□□ 0.92
COL7A1-209ENST00000474432 ADGRD2Q7Z7M1 963 aa20.82■□□□□ 0.92
COL7A1-209ENST00000474432 FAM178BQ8IXR5 827 aa20.82■□□□□ 0.92
COL7A1-209ENST00000474432 C4orf19Q8IY42 314 aa20.82■□□□□ 0.92
COL7A1-209ENST00000474432 DIS3L2Q8IYB7 885 aaKnown RBP20.82■□□□□ 0.92
COL7A1-209ENST00000474432 DHX33Q9H6R0 707 aaKnown RBP20.82■□□□□ 0.92
COL7A1-209ENST00000474432 PCDHGC5Q9Y5F6 944 aa20.82■□□□□ 0.92
COL7A1-209ENST00000474432 A0A0U1RQF3 1178 aa20.81■□□□□ 0.92
COL7A1-209ENST00000474432 LINC01565O15544 149 aa20.81■□□□□ 0.92
COL7A1-209ENST00000474432 CLLU1OSQ5K130 101 aa20.81■□□□□ 0.92
COL7A1-209ENST00000474432 COLGALT1Q8NBJ5 622 aa20.81■□□□□ 0.92
COL7A1-209ENST00000474432 DYDC2Q96IM9 177 aa20.81■□□□□ 0.92
COL7A1-209ENST00000474432 LXNQ9BS40 222 aa20.81■□□□□ 0.92
COL7A1-209ENST00000474432 GCOM2Q9BZD3 368 aaPredicted RBP20.81■□□□□ 0.92
COL7A1-209ENST00000474432 TMEM117Q9H0C3 514 aa20.81■□□□□ 0.92
COL7A1-209ENST00000474432 IFT122Q9HBG6 1241 aa20.81■□□□□ 0.92
COL7A1-209ENST00000474432 RNF216Q9NWF9 866 aaPredicted RBP20.81■□□□□ 0.92
COL7A1-209ENST00000474432 CLDND1Q9NY35 253 aa20.81■□□□□ 0.92
COL7A1-209ENST00000474432 SLITRK3O94933 977 aa20.8■□□□□ 0.92
COL7A1-209ENST00000474432 ZSCAN20P17040 1043 aaPredicted RBP20.8■□□□□ 0.92
COL7A1-209ENST00000474432 CDC42EP1Q00587 391 aa20.8■□□□□ 0.92
COL7A1-209ENST00000474432 ADAM15Q13444 863 aa20.8■□□□□ 0.92
COL7A1-209ENST00000474432 CTTNQ14247 550 aaKnown RBP20.8■□□□□ 0.92
COL7A1-209ENST00000474432 NCAPH2Q6IBW4 605 aa20.8■□□□□ 0.92
COL7A1-209ENST00000474432 ZNF410Q86VK4 478 aa20.8■□□□□ 0.92
COL7A1-209ENST00000474432 RHPN2Q8IUC4 686 aa20.8■□□□□ 0.92
COL7A1-209ENST00000474432 SLFN12Q8IYM2 578 aa20.8■□□□□ 0.92
COL7A1-209ENST00000474432 MTMR9Q96QG7 549 aa20.8■□□□□ 0.92
COL7A1-209ENST00000474432 LIMCH1Q9UPQ0 1083 aa20.8■□□□□ 0.92
COL7A1-209ENST00000474432 NCK2O43639 380 aa20.79■□□□□ 0.92
COL7A1-209ENST00000474432 TBX10O75333 385 aa20.79■□□□□ 0.92
COL7A1-209ENST00000474432 FGF18O76093 207 aa20.79■□□□□ 0.92
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms