RNA–Protein interactions for RNA: ENST00000473405.1

CCDC88B-206, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best)

Gene CCDC88B, Length 783 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-206ENST00000473405 XKR3Q5GH77 459 aa21.15■□□□□ 0.98
CCDC88B-206ENST00000473405 ADGRD2Q7Z7M1 963 aa21.15■□□□□ 0.98
CCDC88B-206ENST00000473405 ZNF710Q8N1W2 664 aa21.15■□□□□ 0.98
CCDC88B-206ENST00000473405 OXER1Q8TDS5 423 aa21.15■□□□□ 0.98
CCDC88B-206ENST00000473405 SH2D3AQ9BRG2 576 aa21.15■□□□□ 0.98
CCDC88B-206ENST00000473405 ELAC1Q9H777 363 aaKnown RBP21.15■□□□□ 0.98
CCDC88B-206ENST00000473405 KCNMB3Q9NPA1 279 aa21.15■□□□□ 0.98
CCDC88B-206ENST00000473405 RNF216Q9NWF9 866 aaPredicted RBP21.15■□□□□ 0.98
CCDC88B-206ENST00000473405 RAPGEFL1Q9UHV5 662 aa21.15■□□□□ 0.98
CCDC88B-206ENST00000473405 IGKV6-21A0A0C4DH24 114 aa21.14■□□□□ 0.97
CCDC88B-206ENST00000473405 CCDC194A0A1B0GVG4 234 aa21.14■□□□□ 0.97
CCDC88B-206ENST00000473405 EML1O00423 815 aa21.14■□□□□ 0.97
CCDC88B-206ENST00000473405 LINC01565O15544 149 aa21.14■□□□□ 0.97
CCDC88B-206ENST00000473405 DARSP14868 501 aaKnown RBP21.14■□□□□ 0.97
CCDC88B-206ENST00000473405 MTERF2Q49AM1 385 aa21.14■□□□□ 0.97
CCDC88B-206ENST00000473405 POF1BQ8WVV4 589 aa21.14■□□□□ 0.97
CCDC88B-206ENST00000473405 RNF19AQ9NV58 838 aa21.14■□□□□ 0.97
CCDC88B-206ENST00000473405 PCDHGC5Q9Y5F6 944 aa21.14■□□□□ 0.97
CCDC88B-206ENST00000473405 LARGE1O95461 756 aa21.13■□□□□ 0.97
CCDC88B-206ENST00000473405 PPP2R5CQ13362 524 aa21.13■□□□□ 0.97
CCDC88B-206ENST00000473405 EARS2Q5JPH6 523 aaKnown RBP21.13■□□□□ 0.97
CCDC88B-206ENST00000473405 PPP4R3AQ6IN85 833 aa21.13■□□□□ 0.97
CCDC88B-206ENST00000473405 ANO5Q75V66 913 aa21.13■□□□□ 0.97
CCDC88B-206ENST00000473405 NEK8Q86SG6 692 aa21.13■□□□□ 0.97
CCDC88B-206ENST00000473405 GJD3Q8N144 294 aa21.13■□□□□ 0.97
CCDC88B-206ENST00000473405 CWH43Q9H720 699 aa21.13■□□□□ 0.97
CCDC88B-206ENST00000473405 ATP6V0A4Q9HBG4 840 aa21.13■□□□□ 0.97
CCDC88B-206ENST00000473405 C11orf16Q9NQ32 467 aa21.13■□□□□ 0.97
CCDC88B-206ENST00000473405 TYW1Q9NV66 732 aaKnown RBP21.13■□□□□ 0.97
CCDC88B-206ENST00000473405 FDPSP14324 419 aaKnown RBP21.12■□□□□ 0.97
CCDC88B-206ENST00000473405 FGFR4P22455 802 aa21.12■□□□□ 0.97
CCDC88B-206ENST00000473405 ANKRD1Q15327 319 aa21.12■□□□□ 0.97
CCDC88B-206ENST00000473405 CLUL1Q15846 466 aa21.12■□□□□ 0.97
CCDC88B-206ENST00000473405 PIK3AP1Q6ZUJ8 805 aa21.12■□□□□ 0.97
CCDC88B-206ENST00000473405 COLGALT1Q8NBJ5 622 aa21.12■□□□□ 0.97
CCDC88B-206ENST00000473405 NLRP7Q8WX94 980 aa21.12■□□□□ 0.97
CCDC88B-206ENST00000473405 HAS1Q92839 578 aa21.12■□□□□ 0.97
CCDC88B-206ENST00000473405 IGFLR1Q9H665 355 aa21.12■□□□□ 0.97
CCDC88B-206ENST00000473405 PCDHB12Q9Y5F1 795 aa21.12■□□□□ 0.97
CCDC88B-206ENST00000473405 FAM205CA6NFA0 338 aa21.11■□□□□ 0.97
CCDC88B-206ENST00000473405 CSDE1O75534 798 aaKnown RBP21.11■□□□□ 0.97
CCDC88B-206ENST00000473405 GCFC2P16383 781 aaKnown RBP21.11■□□□□ 0.97
CCDC88B-206ENST00000473405 XBP1P17861 261 aa21.11■□□□□ 0.97
CCDC88B-206ENST00000473405 PSMC5P62195 406 aa21.11■□□□□ 0.97
CCDC88B-206ENST00000473405 ZP2Q05996 745 aa21.11■□□□□ 0.97
CCDC88B-206ENST00000473405 ADAM15Q13444 863 aa21.11■□□□□ 0.97
CCDC88B-206ENST00000473405 ME3Q16798 604 aa21.11■□□□□ 0.97
CCDC88B-206ENST00000473405 SPOUT1Q5T280 376 aaKnown RBP21.11■□□□□ 0.97
CCDC88B-206ENST00000473405 ERICH6BQ5W0A0 696 aa21.11■□□□□ 0.97
CCDC88B-206ENST00000473405 PLA2G4FQ68DD2 849 aa21.11■□□□□ 0.97
CCDC88B-206ENST00000473405 LRRC55Q6ZSA7 311 aa21.11■□□□□ 0.97
CCDC88B-206ENST00000473405 ECHDC2Q86YB7 292 aa21.11■□□□□ 0.97
CCDC88B-206ENST00000473405 NECAB1Q8N987 351 aa21.11■□□□□ 0.97
CCDC88B-206ENST00000473405 TNFRSF25Q93038 417 aa21.11■□□□□ 0.97
CCDC88B-206ENST00000473405 GTF3C6Q969F1 213 aa21.11■□□□□ 0.97
CCDC88B-206ENST00000473405 FAM20AQ96MK3 541 aa21.11■□□□□ 0.97
CCDC88B-206ENST00000473405 SCLT1Q96NL6 688 aa21.11■□□□□ 0.97
CCDC88B-206ENST00000473405 CASD1Q96PB1 797 aa21.11■□□□□ 0.97
CCDC88B-206ENST00000473405 TMEM117Q9H0C3 514 aa21.11■□□□□ 0.97
CCDC88B-206ENST00000473405 AAASQ9NRG9 546 aa21.11■□□□□ 0.97
CCDC88B-206ENST00000473405 WRAP73Q9P2S5 460 aaPredicted RBP21.11■□□□□ 0.97
CCDC88B-206ENST00000473405 ORC3Q9UBD5 711 aaPredicted RBP21.11■□□□□ 0.97
CCDC88B-206ENST00000473405 DDX11L8A8MPP1 907 aa21.1■□□□□ 0.97
CCDC88B-206ENST00000473405 CCNT1O60563 726 aaKnown RBP21.1■□□□□ 0.97
CCDC88B-206ENST00000473405 MAFO75444 373 aaPredicted RBP21.1■□□□□ 0.97
CCDC88B-206ENST00000473405 FGF18O76093 207 aa21.1■□□□□ 0.97
CCDC88B-206ENST00000473405 ZSCAN20P17040 1043 aaPredicted RBP21.1■□□□□ 0.97
CCDC88B-206ENST00000473405 ATF7P17544 494 aaPredicted RBP21.1■□□□□ 0.97
CCDC88B-206ENST00000473405 UBE3AQ05086 875 aa21.1■□□□□ 0.97
CCDC88B-206ENST00000473405 SMAD2Q15796 467 aaKnown RBP21.1■□□□□ 0.97
CCDC88B-206ENST00000473405 ZNF598Q86UK7 904 aaKnown RBP21.1■□□□□ 0.97
CCDC88B-206ENST00000473405 EFHBQ8N7U6 833 aa21.1■□□□□ 0.97
CCDC88B-206ENST00000473405 MSLNLQ96KJ4 702 aa21.1■□□□□ 0.97
CCDC88B-206ENST00000473405 FAM50BQ9Y247 325 aa21.1■□□□□ 0.97
CCDC88B-206ENST00000473405 PI4K2BG5E9Z4 385 aa21.09■□□□□ 0.97
CCDC88B-206ENST00000473405 HOXA2O43364 376 aa21.09■□□□□ 0.97
CCDC88B-206ENST00000473405 MBTPS2O43462 519 aa21.09■□□□□ 0.97
CCDC88B-206ENST00000473405 GLP2RO95838 553 aa21.09■□□□□ 0.97
CCDC88B-206ENST00000473405 LAG3P18627 525 aa21.09■□□□□ 0.97
CCDC88B-206ENST00000473405 SSTR3P32745 418 aaPredicted RBP21.09■□□□□ 0.97
CCDC88B-206ENST00000473405 QARSP47897 775 aaKnown RBP21.09■□□□□ 0.97
CCDC88B-206ENST00000473405 NRIP1P48552 1158 aa21.09■□□□□ 0.97
CCDC88B-206ENST00000473405 NR5A1Q13285 461 aa21.09■□□□□ 0.97
CCDC88B-206ENST00000473405 CLLU1OSQ5K130 101 aa21.09■□□□□ 0.97
CCDC88B-206ENST00000473405 POTEDQ86YR6 584 aa21.09■□□□□ 0.97
CCDC88B-206ENST00000473405 PPP2R3CQ969Q6 453 aa21.09■□□□□ 0.97
CCDC88B-206ENST00000473405 LRFN3Q9BTN0 628 aa21.09■□□□□ 0.97
CCDC88B-206ENST00000473405 TLR9Q9NR96 1032 aa21.09■□□□□ 0.97
CCDC88B-206ENST00000473405 CLEC1BQ9P126 229 aa21.09■□□□□ 0.97
CCDC88B-206ENST00000473405 PRKAG3Q9UGI9 489 aa21.09■□□□□ 0.97
CCDC88B-206ENST00000473405 A0A087WZ62 844 aa21.08■□□□□ 0.97
CCDC88B-206ENST00000473405 A0A0U1RQF3 1178 aa21.08■□□□□ 0.97
CCDC88B-206ENST00000473405 C19orf67A6NJJ6 358 aa21.08■□□□□ 0.97
CCDC88B-206ENST00000473405 TBX3O15119 743 aa21.08■□□□□ 0.97
CCDC88B-206ENST00000473405 DNM2P50570 870 aa21.08■□□□□ 0.97
CCDC88B-206ENST00000473405 SPIRE1Q08AE8 756 aa21.08■□□□□ 0.97
CCDC88B-206ENST00000473405 SMAD4Q13485 552 aaKnown RBP21.08■□□□□ 0.97
CCDC88B-206ENST00000473405 CSPP1Q1MSJ5 1256 aa21.08■□□□□ 0.97
CCDC88B-206ENST00000473405 ADHFE1Q8IWW8 467 aa21.08■□□□□ 0.97
CCDC88B-206ENST00000473405 THNSL1Q8IYQ7 743 aa21.08■□□□□ 0.97
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms