RNA–Protein interactions for RNA: ENST00000473258.1

COL6A3-210, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2

Gene COL6A3, Length 5,433 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-210ENST00000473258 ASAP2O43150 1006 aa9.57□□□□□ -0.88
COL6A3-210ENST00000473258 KRT36O76013 467 aa9.57□□□□□ -0.88
COL6A3-210ENST00000473258 H2AFXP16104 143 aaPredicted RBP9.57□□□□□ -0.88
COL6A3-210ENST00000473258 RFX1P22670 979 aa9.57□□□□□ -0.88
COL6A3-210ENST00000473258 SOX6P35712 828 aa9.57□□□□□ -0.88
COL6A3-210ENST00000473258 HIF1AQ16665 826 aa9.57□□□□□ -0.88
COL6A3-210ENST00000473258 DPCR1Q3MIW9 517 aa9.57□□□□□ -0.88
COL6A3-210ENST00000473258 AGBL2Q5U5Z8 902 aa9.57□□□□□ -0.88
COL6A3-210ENST00000473258 RAB44Q7Z6P3 723 aaPredicted RBP9.57□□□□□ -0.88
COL6A3-210ENST00000473258 C11orf74Q86VG3 221 aa9.57□□□□□ -0.88
COL6A3-210ENST00000473258 FUKQ8N0W3 1084 aa9.57□□□□□ -0.88
COL6A3-210ENST00000473258 OSCP1Q8WVF1 389 aa9.57□□□□□ -0.88
COL6A3-210ENST00000473258 GLMNQ92990 594 aa9.57□□□□□ -0.88
COL6A3-210ENST00000473258 CCDC127Q96BQ5 260 aa9.57□□□□□ -0.88
COL6A3-210ENST00000473258 KLHL32Q96NJ5 620 aa9.57□□□□□ -0.88
COL6A3-210ENST00000473258 RANBP17Q9H2T7 1088 aaKnown RBP9.57□□□□□ -0.88
COL6A3-210ENST00000473258 MARCH7Q9H992 704 aa9.57□□□□□ -0.88
COL6A3-210ENST00000473258 SPINK5Q9NQ38 1064 aaPredicted RBP9.57□□□□□ -0.88
COL6A3-210ENST00000473258 LIMA1Q9UHB6 759 aaKnown RBP9.57□□□□□ -0.88
COL6A3-210ENST00000473258 SOS1Q07889 1333 aaPredicted RBP9.56□□□□□ -0.88
COL6A3-210ENST00000473258 ABLIM1O14639 778 aa9.56□□□□□ -0.88
COL6A3-210ENST00000473258 AKAP10O43572 662 aa9.56□□□□□ -0.88
COL6A3-210ENST00000473258 CDH2P19022 906 aaPredicted RBP9.56□□□□□ -0.88
COL6A3-210ENST00000473258 SAT1P21673 171 aa9.56□□□□□ -0.88
COL6A3-210ENST00000473258 FLT3P36888 993 aa9.56□□□□□ -0.88
COL6A3-210ENST00000473258 DMC1Q14565 340 aa9.56□□□□□ -0.88
COL6A3-210ENST00000473258 ARHGEF6Q15052 776 aa9.56□□□□□ -0.88
COL6A3-210ENST00000473258 SHQ1Q6PI26 577 aaKnown RBP9.56□□□□□ -0.88
COL6A3-210ENST00000473258 KRT74Q7RTS7 529 aa9.56□□□□□ -0.88
COL6A3-210ENST00000473258 PCGF5Q86SE9 256 aa9.56□□□□□ -0.88
COL6A3-210ENST00000473258 NCLNQ969V3 563 aa9.56□□□□□ -0.88
COL6A3-210ENST00000473258 RPS6KC1Q96S38 1066 aa9.56□□□□□ -0.88
COL6A3-210ENST00000473258 TEX13BQ9BXU2 312 aa9.56□□□□□ -0.88
COL6A3-210ENST00000473258 AURKCQ9UQB9 309 aa9.56□□□□□ -0.88
COL6A3-210ENST00000473258 SNX14Q9Y5W7 946 aa9.56□□□□□ -0.88
COL6A3-210ENST00000473258 ADGRA3Q8IWK6 1321 aa9.56□□□□□ -0.88
COL6A3-210ENST00000473258 ERICH3Q5RHP9 1530 aa9.56□□□□□ -0.88
COL6A3-210ENST00000473258 N4BP1O75113 896 aaKnown RBP9.56□□□□□ -0.88
COL6A3-210ENST00000473258 EFTUD2Q15029 972 aaKnown RBP eCLIP9.56□□□□□ -0.88
COL6A3-210ENST00000473258 LRRC8EQ6NSJ5 796 aa9.56□□□□□ -0.88
COL6A3-210ENST00000473258 CRELD2Q6UXH1 353 aaPredicted RBP9.56□□□□□ -0.88
COL6A3-210ENST00000473258 DPH6Q7L8W6 267 aa9.56□□□□□ -0.88
COL6A3-210ENST00000473258 TRIM69Q86WT6 500 aa9.56□□□□□ -0.88
COL6A3-210ENST00000473258 CMTM5Q96DZ9 223 aa9.56□□□□□ -0.88
COL6A3-210ENST00000473258 VPS39Q96JC1 886 aa9.56□□□□□ -0.88
COL6A3-210ENST00000473258 FUT8Q9BYC5 575 aa9.56□□□□□ -0.88
COL6A3-210ENST00000473258 AASDHPPTQ9NRN7 309 aa9.56□□□□□ -0.88
COL6A3-210ENST00000473258 COPG2Q9UBF2 871 aa9.56□□□□□ -0.88
COL6A3-210ENST00000473258 VWA5AO00534 786 aa9.56□□□□□ -0.88
COL6A3-210ENST00000473258 ALOX5P09917 674 aa9.56□□□□□ -0.88
COL6A3-210ENST00000473258 CCDC130P13994 396 aa9.56□□□□□ -0.88
COL6A3-210ENST00000473258 YWHABP31946 246 aaKnown RBP9.56□□□□□ -0.88
COL6A3-210ENST00000473258 TRIP13Q15645 432 aaPredicted RBP9.56□□□□□ -0.88
COL6A3-210ENST00000473258 KYNUQ16719 465 aa9.56□□□□□ -0.88
COL6A3-210ENST00000473258 TAF8Q7Z7C8 310 aa9.56□□□□□ -0.88
COL6A3-210ENST00000473258 ESR2Q92731 530 aa9.56□□□□□ -0.88
COL6A3-210ENST00000473258 AGBL1Q96MI9 1066 aa9.56□□□□□ -0.88
COL6A3-210ENST00000473258 C6orf50Q9HD87 102 aa9.56□□□□□ -0.88
COL6A3-210ENST00000473258 HERC5Q9UII4 1024 aaKnown RBP9.56□□□□□ -0.88
COL6A3-210ENST00000473258 NOC2LQ9Y3T9 749 aaKnown RBP9.56□□□□□ -0.88
COL6A3-210ENST00000473258 DAPK3O43293 454 aa9.56□□□□□ -0.88
COL6A3-210ENST00000473258 EFCAB14O75071 495 aa9.56□□□□□ -0.88
COL6A3-210ENST00000473258 CHEK2O96017 543 aa9.56□□□□□ -0.88
COL6A3-210ENST00000473258 ATG14Q6ZNE5 492 aa9.56□□□□□ -0.88
COL6A3-210ENST00000473258 ZBTB8BQ8NAP8 495 aaPredicted RBP9.56□□□□□ -0.88
COL6A3-210ENST00000473258 TMEM87AQ8NBN3 555 aa9.56□□□□□ -0.88
COL6A3-210ENST00000473258 ZNF285Q96NJ3 590 aa9.56□□□□□ -0.88
COL6A3-210ENST00000473258 AP1M1Q9BXS5 423 aa9.56□□□□□ -0.88
COL6A3-210ENST00000473258 ARMCX3Q9UH62 379 aaPredicted RBP9.56□□□□□ -0.88
COL6A3-210ENST00000473258 MLXQ9UH92 298 aa9.56□□□□□ -0.88
COL6A3-210ENST00000473258 PNMA8CA0A1B0GUJ8 204 aa9.55□□□□□ -0.88
COL6A3-210ENST00000473258 A0A1W2PQ27 194 aa9.55□□□□□ -0.88
COL6A3-210ENST00000473258 A0A1W2PQ64 194 aa9.55□□□□□ -0.88
COL6A3-210ENST00000473258 A0A1W2PQD8 194 aa9.55□□□□□ -0.88
COL6A3-210ENST00000473258 TNFAIP8O95379 198 aa9.55□□□□□ -0.88
COL6A3-210ENST00000473258 ABCB1P08183 1280 aaPredicted RBP9.55□□□□□ -0.88
COL6A3-210ENST00000473258 FAM58BPP0C7Q3 252 aa9.55□□□□□ -0.88
COL6A3-210ENST00000473258 CALM1P0DP23 149 aa9.55□□□□□ -0.88
COL6A3-210ENST00000473258 CALM2P0DP24 149 aa9.55□□□□□ -0.88
COL6A3-210ENST00000473258 CALM3P0DP25 149 aa9.55□□□□□ -0.88
COL6A3-210ENST00000473258 CDC25CP30307 473 aa9.55□□□□□ -0.88
COL6A3-210ENST00000473258 C6orf183Q5T699 404 aa9.55□□□□□ -0.88
COL6A3-210ENST00000473258 SNX30Q5VWJ9 437 aa9.55□□□□□ -0.88
COL6A3-210ENST00000473258 KLHL17Q6TDP4 642 aa9.55□□□□□ -0.88
COL6A3-210ENST00000473258 IKBIPQ70UQ0 350 aa9.55□□□□□ -0.88
COL6A3-210ENST00000473258 DRAXINQ8NBI3 349 aaPredicted RBP9.55□□□□□ -0.88
COL6A3-210ENST00000473258 RNPC3Q96LT9 517 aaKnown RBP9.55□□□□□ -0.88
COL6A3-210ENST00000473258 C1orf50Q9BV19 199 aa9.55□□□□□ -0.88
COL6A3-210ENST00000473258 FIS1Q9Y3D6 152 aa9.55□□□□□ -0.88
COL6A3-210ENST00000473258 CARMIL1Q5VZK9 1371 aa9.55□□□□□ -0.88
COL6A3-210ENST00000473258 SRGAP2O75044 1071 aa9.55□□□□□ -0.88
COL6A3-210ENST00000473258 MYL1P05976 194 aa9.55□□□□□ -0.88
COL6A3-210ENST00000473258 P4HA1P13674 534 aa9.55□□□□□ -0.88
COL6A3-210ENST00000473258 PDE4BQ07343 736 aa9.55□□□□□ -0.88
COL6A3-210ENST00000473258 TRAP1Q12931 704 aaKnown RBP9.55□□□□□ -0.88
COL6A3-210ENST00000473258 CCDC157Q569K6 752 aa9.55□□□□□ -0.88
COL6A3-210ENST00000473258 PLA2G4DQ86XP0 818 aa9.55□□□□□ -0.88
COL6A3-210ENST00000473258 CLVS1Q8IUQ0 354 aaPredicted RBP9.55□□□□□ -0.88
COL6A3-210ENST00000473258 MYOCDQ8IZQ8 938 aa9.55□□□□□ -0.88
COL6A3-210ENST00000473258 HPS1Q92902 700 aa9.55□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms