RNA–Protein interactions for RNA: ENST00000473099.1

VPS13D-205, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2

Gene VPS13D, Length 461 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-205ENST00000473099 FILIP1Q7Z7B0 1213 aa14.13□□□□□ -0.15
VPS13D-205ENST00000473099 ZC3H3Q8IXZ2 948 aaKnown RBP14.13□□□□□ -0.15
VPS13D-205ENST00000473099 GLIS3Q8NEA6 775 aa14.13□□□□□ -0.15
VPS13D-205ENST00000473099 OR6J1Q8NGC5 347 aa14.13□□□□□ -0.15
VPS13D-205ENST00000473099 TCP11Q8WWU5 503 aa14.13□□□□□ -0.15
VPS13D-205ENST00000473099 KCNN1Q92952 543 aa14.13□□□□□ -0.15
VPS13D-205ENST00000473099 FIZ1Q96SL8 496 aa14.13□□□□□ -0.15
VPS13D-205ENST00000473099 NTPCRQ9BSD7 190 aaKnown RBP14.13□□□□□ -0.15
VPS13D-205ENST00000473099 ZNF215Q9UL58 517 aaPredicted RBP14.13□□□□□ -0.15
VPS13D-205ENST00000473099 Q9Y3F1 56 aa14.13□□□□□ -0.15
VPS13D-205ENST00000473099 TELO2Q9Y4R8 837 aa14.13□□□□□ -0.15
VPS13D-205ENST00000473099 TRIP12Q14669 1992 aaPredicted RBP14.13□□□□□ -0.15
VPS13D-205ENST00000473099 TMEM150BA6NC51 233 aa14.12□□□□□ -0.15
VPS13D-205ENST00000473099 PPP1R37O75864 691 aa14.12□□□□□ -0.15
VPS13D-205ENST00000473099 IGHA2P01877 340 aa14.12□□□□□ -0.15
VPS13D-205ENST00000473099 MYBP10242 640 aa14.12□□□□□ -0.15
VPS13D-205ENST00000473099 HOXD8P13378 290 aaPredicted RBP14.12□□□□□ -0.15
VPS13D-205ENST00000473099 CYP2B6P20813 491 aa14.12□□□□□ -0.15
VPS13D-205ENST00000473099 CASP5P51878 434 aa14.12□□□□□ -0.15
VPS13D-205ENST00000473099 COPB1P53618 953 aaKnown RBP14.12□□□□□ -0.15
VPS13D-205ENST00000473099 SP3Q02447 781 aa14.12□□□□□ -0.15
VPS13D-205ENST00000473099 MYBPC2Q14324 1141 aa14.12□□□□□ -0.15
VPS13D-205ENST00000473099 NR1I3Q14994 352 aa14.12□□□□□ -0.15
VPS13D-205ENST00000473099 BRDTQ58F21 947 aaPredicted RBP14.12□□□□□ -0.15
VPS13D-205ENST00000473099 HSP90AA4PQ58FG1 418 aa14.12□□□□□ -0.15
VPS13D-205ENST00000473099 LRRC55Q6ZSA7 311 aa14.12□□□□□ -0.15
VPS13D-205ENST00000473099 APTXQ7Z2E3 356 aaKnown RBP14.12□□□□□ -0.15
VPS13D-205ENST00000473099 IRF2BP1Q8IU81 584 aa14.12□□□□□ -0.15
VPS13D-205ENST00000473099 VSTM4Q8IW00 320 aa14.12□□□□□ -0.15
VPS13D-205ENST00000473099 NELFCDQ8IXH7 590 aa14.12□□□□□ -0.15
VPS13D-205ENST00000473099 COPS5Q92905 334 aa14.12□□□□□ -0.15
VPS13D-205ENST00000473099 CNOT6LQ96LI5 555 aaKnown RBP14.12□□□□□ -0.15
VPS13D-205ENST00000473099 ACCSQ96QU6 501 aa14.12□□□□□ -0.15
VPS13D-205ENST00000473099 STRA6Q9BX79 667 aa14.12□□□□□ -0.15
VPS13D-205ENST00000473099 FGFBP2Q9BYJ0 223 aa14.12□□□□□ -0.15
VPS13D-205ENST00000473099 GBP3Q9H0R5 595 aa14.12□□□□□ -0.15
VPS13D-205ENST00000473099 RTN4Q9NQC3 1192 aaKnown RBP14.12□□□□□ -0.15
VPS13D-205ENST00000473099 EXOC7Q9UPT5 735 aa14.12□□□□□ -0.15
VPS13D-205ENST00000473099 PHLPP2Q6ZVD8 1323 aa14.12□□□□□ -0.15
VPS13D-205ENST00000473099 N4BP3O15049 544 aa14.11□□□□□ -0.15
VPS13D-205ENST00000473099 MAFO75444 373 aaPredicted RBP14.11□□□□□ -0.15
VPS13D-205ENST00000473099 PRPF6O94906 941 aaKnown RBP14.11□□□□□ -0.15
VPS13D-205ENST00000473099 GNRH1P01148 92 aa14.11□□□□□ -0.15
VPS13D-205ENST00000473099 LGALS2P05162 132 aa14.11□□□□□ -0.15
VPS13D-205ENST00000473099 HSPA8P11142 646 aaKnown RBP14.11□□□□□ -0.15
VPS13D-205ENST00000473099 SMPD1P17405 629 aa14.11□□□□□ -0.15
VPS13D-205ENST00000473099 HOXD10P28358 340 aa14.11□□□□□ -0.15
VPS13D-205ENST00000473099 NMT1P30419 496 aaKnown RBP14.11□□□□□ -0.15
VPS13D-205ENST00000473099 MTIF2P46199 727 aaKnown RBP14.11□□□□□ -0.15
VPS13D-205ENST00000473099 DNM2P50570 870 aa14.11□□□□□ -0.15
VPS13D-205ENST00000473099 MARSP56192 900 aaKnown RBP14.11□□□□□ -0.15
VPS13D-205ENST00000473099 PEX3P56589 373 aa14.11□□□□□ -0.15
VPS13D-205ENST00000473099 GTF2BQ00403 316 aa14.11□□□□□ -0.15
VPS13D-205ENST00000473099 PPP2R3AQ06190 1150 aa14.11□□□□□ -0.15
VPS13D-205ENST00000473099 TBC1D8BQ0IIM8 1120 aa14.11□□□□□ -0.15
VPS13D-205ENST00000473099 PLCB4Q15147 1175 aa14.11□□□□□ -0.15
VPS13D-205ENST00000473099 DGKDQ16760 1214 aa14.11□□□□□ -0.15
VPS13D-205ENST00000473099 ZNF484Q5JVG2 852 aa14.11□□□□□ -0.15
VPS13D-205ENST00000473099 MFSD14CQ5VZR4 134 aa14.11□□□□□ -0.15
VPS13D-205ENST00000473099 MAEAQ7L5Y9 396 aa14.11□□□□□ -0.15
VPS13D-205ENST00000473099 TRMT1LQ7Z2T5 733 aaKnown RBP14.11□□□□□ -0.15
VPS13D-205ENST00000473099 HAUS6Q7Z4H7 955 aa14.11□□□□□ -0.15
VPS13D-205ENST00000473099 SPC24Q8NBT2 197 aa14.11□□□□□ -0.15
VPS13D-205ENST00000473099 TMEM174Q8WUU8 243 aa14.11□□□□□ -0.15
VPS13D-205ENST00000473099 NAP1L5Q96NT1 182 aaPredicted RBP14.11□□□□□ -0.15
VPS13D-205ENST00000473099 TUBGCP2Q9BSJ2 902 aa14.11□□□□□ -0.15
VPS13D-205ENST00000473099 KMT5AQ9NQR1 393 aa14.11□□□□□ -0.15
VPS13D-205ENST00000473099 XPNPEP1Q9NQW7 623 aa14.11□□□□□ -0.15
VPS13D-205ENST00000473099 FAM184BQ9ULE4 1060 aa14.11□□□□□ -0.15
VPS13D-205ENST00000473099 SLC16A3O15427 465 aaKnown RBP14.1□□□□□ -0.15
VPS13D-205ENST00000473099 NRDCO43847 1150 aa14.1□□□□□ -0.15
VPS13D-205ENST00000473099 MMP3P08254 477 aa14.1□□□□□ -0.15
VPS13D-205ENST00000473099 ZNF865P0CJ78 1059 aaPredicted RBP14.1□□□□□ -0.15
VPS13D-205ENST00000473099 NR2F2P24468 414 aa14.1□□□□□ -0.15
VPS13D-205ENST00000473099 NAMPTP43490 491 aa14.1□□□□□ -0.15
VPS13D-205ENST00000473099 ADAM9Q13443 819 aa14.1□□□□□ -0.15
VPS13D-205ENST00000473099 HSP90AA2PQ14568 343 aaPredicted RBP14.1□□□□□ -0.15
VPS13D-205ENST00000473099 ARHGEF6Q15052 776 aa14.1□□□□□ -0.15
VPS13D-205ENST00000473099 MAN2A1Q16706 1144 aa14.1□□□□□ -0.15
VPS13D-205ENST00000473099 IER5Q5VY09 327 aa14.1□□□□□ -0.15
VPS13D-205ENST00000473099 SPECC1LQ69YQ0 1117 aa14.1□□□□□ -0.15
VPS13D-205ENST00000473099 TMC6Q7Z403 805 aa14.1□□□□□ -0.15
VPS13D-205ENST00000473099 SLC9A9Q8IVB4 645 aa14.1□□□□□ -0.15
VPS13D-205ENST00000473099 SYCP3Q8IZU3 236 aa14.1□□□□□ -0.15
VPS13D-205ENST00000473099 CCDC150Q8NCX0 1101 aa14.1□□□□□ -0.15
VPS13D-205ENST00000473099 AFG1LQ8WV93 481 aa14.1□□□□□ -0.15
VPS13D-205ENST00000473099 CEP89Q96ST8 783 aa14.1□□□□□ -0.15
VPS13D-205ENST00000473099 SH2D3AQ9BRG2 576 aa14.1□□□□□ -0.15
VPS13D-205ENST00000473099 MKNK1Q9BUB5 465 aa14.1□□□□□ -0.15
VPS13D-205ENST00000473099 POLR3FQ9H1D9 316 aaPredicted RBP14.1□□□□□ -0.15
VPS13D-205ENST00000473099 METTL14Q9HCE5 456 aaKnown RBP14.1□□□□□ -0.15
VPS13D-205ENST00000473099 FLRT1Q9NZU1 646 aa14.1□□□□□ -0.15
VPS13D-205ENST00000473099 TRPC6Q9Y210 931 aa14.1□□□□□ -0.15
VPS13D-205ENST00000473099 ITIH6Q6UXX5 1313 aa14.1□□□□□ -0.15
VPS13D-205ENST00000473099 ZMYM2Q9UBW7 1377 aa14.09□□□□□ -0.15
VPS13D-205ENST00000473099 FRMPD3Q5JV73 1810 aa14.09□□□□□ -0.15
VPS13D-205ENST00000473099 C11orf97A0A1B0GVM6 126 aaPredicted RBP14.09□□□□□ -0.15
VPS13D-205ENST00000473099 A0A1W2PQC6 194 aa14.09□□□□□ -0.15
VPS13D-205ENST00000473099 A6NJR5 290 aa14.09□□□□□ -0.15
VPS13D-205ENST00000473099 CCDC169A6NNP5 214 aa14.09□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 52.1 ms