RNA–Protein interactions for RNA: ENST00000471834.1

SYNE1-220, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 7,229 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-220ENST00000471834 CEP128Q6ZU80 1094 aa5.81□□□□□ -1.48
SYNE1-220ENST00000471834 CYS1Q717R9 158 aa5.81□□□□□ -1.48
SYNE1-220ENST00000471834 CHST3Q7LGC8 479 aa5.81□□□□□ -1.48
SYNE1-220ENST00000471834 JAMLQ86YT9 394 aa5.81□□□□□ -1.48
SYNE1-220ENST00000471834 TICAM1Q8IUC6 712 aa5.81□□□□□ -1.48
SYNE1-220ENST00000471834 NSMCE1Q8WV22 266 aa5.81□□□□□ -1.48
SYNE1-220ENST00000471834 TRERF1Q96PN7 1200 aa5.81□□□□□ -1.48
SYNE1-220ENST00000471834 MRM3Q9HC36 420 aaKnown RBP5.81□□□□□ -1.48
SYNE1-220ENST00000471834 CABP5Q9NP86 173 aa5.81□□□□□ -1.48
SYNE1-220ENST00000471834 TMOD3Q9NYL9 352 aa5.81□□□□□ -1.48
SYNE1-220ENST00000471834 B4DLN1 442 aa5.8□□□□□ -1.48
SYNE1-220ENST00000471834 PHACTR2O75167 634 aa5.8□□□□□ -1.48
SYNE1-220ENST00000471834 ACADSP16219 412 aa5.8□□□□□ -1.48
SYNE1-220ENST00000471834 TRADDQ15628 312 aa5.8□□□□□ -1.48
SYNE1-220ENST00000471834 DBN1Q16643 649 aa5.8□□□□□ -1.48
SYNE1-220ENST00000471834 SPECC1Q5M775 1068 aa5.8□□□□□ -1.48
SYNE1-220ENST00000471834 OGFOD1Q8N543 542 aa5.8□□□□□ -1.48
SYNE1-220ENST00000471834 BANK1Q8NDB2 785 aa5.8□□□□□ -1.48
SYNE1-220ENST00000471834 TPCN2Q8NHX9 752 aa5.8□□□□□ -1.48
SYNE1-220ENST00000471834 RUNDC3BQ96NL0 473 aa5.8□□□□□ -1.48
SYNE1-220ENST00000471834 NR1H4Q96RI1 486 aaPredicted RBP5.8□□□□□ -1.48
SYNE1-220ENST00000471834 NOP53Q9NZM5 478 aaKnown RBP5.8□□□□□ -1.48
SYNE1-220ENST00000471834 CYP3A4P08684 503 aa5.8□□□□□ -1.48
SYNE1-220ENST00000471834 PABPC4LP0CB38 370 aaKnown RBP5.8□□□□□ -1.48
SYNE1-220ENST00000471834 TRAF1Q13077 416 aa5.8□□□□□ -1.48
SYNE1-220ENST00000471834 DHRS4L2Q6PKH6 230 aa5.8□□□□□ -1.48
SYNE1-220ENST00000471834 ARMC2Q8NEN0 867 aa5.8□□□□□ -1.48
SYNE1-220ENST00000471834 RFFLQ8WZ73 363 aa5.8□□□□□ -1.48
SYNE1-220ENST00000471834 RBM38Q9H0Z9 239 aaKnown RBP5.8□□□□□ -1.48
SYNE1-220ENST00000471834 VAT1LQ9HCJ6 419 aa5.8□□□□□ -1.48
SYNE1-220ENST00000471834 SAR1AQ9NR31 198 aa5.8□□□□□ -1.48
SYNE1-220ENST00000471834 ZFATQ9P243 1243 aa5.8□□□□□ -1.48
SYNE1-220ENST00000471834 PRPF4O43172 522 aaKnown RBP eCLIP5.8□□□□□ -1.48
SYNE1-220ENST00000471834 ATP5HO75947 161 aa5.8□□□□□ -1.48
SYNE1-220ENST00000471834 ECM2O94769 699 aaPredicted RBP5.8□□□□□ -1.48
SYNE1-220ENST00000471834 PLEKHA8P1O95397 391 aa5.8□□□□□ -1.48
SYNE1-220ENST00000471834 ATP5BP06576 529 aaKnown RBP5.8□□□□□ -1.48
SYNE1-220ENST00000471834 PSMC4P43686 418 aa5.8□□□□□ -1.48
SYNE1-220ENST00000471834 NUMBP49757 651 aa5.8□□□□□ -1.48
SYNE1-220ENST00000471834 PPP2R5AQ15172 486 aa5.8□□□□□ -1.48
SYNE1-220ENST00000471834 ANKRD20A2Q5SQ80 823 aa5.8□□□□□ -1.48
SYNE1-220ENST00000471834 ANKRD20A1Q5TYW2 823 aa5.8□□□□□ -1.48
SYNE1-220ENST00000471834 ANKRD20A3Q5VUR7 823 aa5.8□□□□□ -1.48
SYNE1-220ENST00000471834 SCFD1Q8WVM8 642 aa5.8□□□□□ -1.48
SYNE1-220ENST00000471834 PSPC1Q8WXF1 523 aaKnown RBP5.8□□□□□ -1.48
SYNE1-220ENST00000471834 CTNNBL1Q8WYA6 563 aaPredicted RBP5.8□□□□□ -1.48
SYNE1-220ENST00000471834 DHX38Q92620 1227 aaKnown RBP5.8□□□□□ -1.48
SYNE1-220ENST00000471834 SERPINB12Q96P63 405 aa5.8□□□□□ -1.48
SYNE1-220ENST00000471834 TSG101Q99816 390 aa5.8□□□□□ -1.48
SYNE1-220ENST00000471834 GPR88Q9GZN0 384 aa5.8□□□□□ -1.48
SYNE1-220ENST00000471834 NR2E1Q9Y466 385 aa5.8□□□□□ -1.48
SYNE1-220ENST00000471834 UBE4BO95155 1302 aa5.8□□□□□ -1.48
SYNE1-220ENST00000471834 TCRBV5S1A1TA0A578 114 aa5.8□□□□□ -1.48
SYNE1-220ENST00000471834 MYMKA6NI61 221 aa5.8□□□□□ -1.48
SYNE1-220ENST00000471834 C2CD2LO14523 706 aa5.8□□□□□ -1.48
SYNE1-220ENST00000471834 ZNF185O15231 689 aa5.8□□□□□ -1.48
SYNE1-220ENST00000471834 ZSCAN9O15535 394 aaPredicted RBP5.8□□□□□ -1.48
SYNE1-220ENST00000471834 OR52Z1P0C646 297 aa5.8□□□□□ -1.48
SYNE1-220ENST00000471834 TMOD1P28289 359 aa5.8□□□□□ -1.48
SYNE1-220ENST00000471834 CHRNA3P32297 505 aa5.8□□□□□ -1.48
SYNE1-220ENST00000471834 RAP1GDS1P52306 607 aa5.8□□□□□ -1.48
SYNE1-220ENST00000471834 MTFR1Q15390 333 aa5.8□□□□□ -1.48
SYNE1-220ENST00000471834 ZNF571Q7Z3V5 609 aaPredicted RBP5.8□□□□□ -1.48
SYNE1-220ENST00000471834 CACNA2D3Q8IZS8 1091 aa5.8□□□□□ -1.48
SYNE1-220ENST00000471834 FITM2Q8N6M3 262 aa5.8□□□□□ -1.48
SYNE1-220ENST00000471834 AGAP11Q8TF27 550 aa5.8□□□□□ -1.48
SYNE1-220ENST00000471834 FBXL18Q96ME1 805 aa5.8□□□□□ -1.48
SYNE1-220ENST00000471834 MLXIPQ9HAP2 919 aa5.8□□□□□ -1.48
SYNE1-220ENST00000471834 NFU1Q9UMS0 254 aa5.8□□□□□ -1.48
SYNE1-220ENST00000471834 PEX1O43933 1283 aa5.8□□□□□ -1.48
SYNE1-220ENST00000471834 HAND2P61296 217 aa5.8□□□□□ -1.48
SYNE1-220ENST00000471834 ZRSR2Q15696 482 aaKnown RBP5.8□□□□□ -1.48
SYNE1-220ENST00000471834 SLC9C1Q4G0N8 1177 aa5.8□□□□□ -1.48
SYNE1-220ENST00000471834 DZIP1Q86YF9 867 aaKnown RBP5.8□□□□□ -1.48
SYNE1-220ENST00000471834 TEX9Q8N6V9 391 aa5.8□□□□□ -1.48
SYNE1-220ENST00000471834 BCS1LQ9Y276 419 aa5.8□□□□□ -1.48
SYNE1-220ENST00000471834 CASQ2O14958 399 aaPredicted RBP5.8□□□□□ -1.48
SYNE1-220ENST00000471834 EXOC3O60645 756 aa5.8□□□□□ -1.48
SYNE1-220ENST00000471834 TPBGLP0DKB5 382 aa5.8□□□□□ -1.48
SYNE1-220ENST00000471834 NQO1P15559 274 aaKnown RBP5.8□□□□□ -1.48
SYNE1-220ENST00000471834 CASP1P29466 404 aa5.8□□□□□ -1.48
SYNE1-220ENST00000471834 XIAPP98170 497 aa5.8□□□□□ -1.48
SYNE1-220ENST00000471834 UBXN1Q04323 297 aa5.8□□□□□ -1.48
SYNE1-220ENST00000471834 EXOC3L1Q86VI1 746 aa5.8□□□□□ -1.48
SYNE1-220ENST00000471834 RIBC1Q8N443 379 aaPredicted RBP5.8□□□□□ -1.48
SYNE1-220ENST00000471834 NEK9Q8TD19 979 aa5.8□□□□□ -1.48
SYNE1-220ENST00000471834 NAP1L4Q99733 375 aaKnown RBP5.8□□□□□ -1.48
SYNE1-220ENST00000471834 ZNF341Q9BYN7 854 aa5.8□□□□□ -1.48
SYNE1-220ENST00000471834 TYROBPO43914 113 aa5.79□□□□□ -1.48
SYNE1-220ENST00000471834 PDCD2Q16342 344 aaPredicted RBP5.79□□□□□ -1.48
SYNE1-220ENST00000471834 LMBR1Q8WVP7 490 aa5.79□□□□□ -1.48
SYNE1-220ENST00000471834 ZNF594Q96JF6 807 aaPredicted RBP5.79□□□□□ -1.48
SYNE1-220ENST00000471834 FAM192AQ9GZU8 254 aa5.79□□□□□ -1.48
SYNE1-220ENST00000471834 MTFR1LQ9H019 292 aa5.79□□□□□ -1.48
SYNE1-220ENST00000471834 NAPBQ9H115 298 aa5.79□□□□□ -1.48
SYNE1-220ENST00000471834 METTL14Q9HCE5 456 aaKnown RBP5.79□□□□□ -1.48
SYNE1-220ENST00000471834 STX18Q9P2W9 335 aaKnown RBP5.79□□□□□ -1.48
SYNE1-220ENST00000471834 SORBS3O60504 671 aa5.79□□□□□ -1.48
SYNE1-220ENST00000471834 MAGEA6P43360 314 aa5.79□□□□□ -1.48
SYNE1-220ENST00000471834 MNAT1P51948 309 aa5.79□□□□□ -1.48
Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms