RNA–Protein interactions for RNA: ENST00000463837.5

CCDC88B-204, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 5,235 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-204ENST00000463837 HSPA8P11142 646 aaKnown RBP20.34■□□□□ 0.85
CCDC88B-204ENST00000463837 GUCY1A3Q02108 690 aa20.34■□□□□ 0.85
CCDC88B-204ENST00000463837 DCLK2Q8N568 766 aa20.34■□□□□ 0.85
CCDC88B-204ENST00000463837 PIP4K2CQ8TBX8 421 aa20.34■□□□□ 0.85
CCDC88B-204ENST00000463837 CEP170P1Q96L14 293 aa20.34■□□□□ 0.85
CCDC88B-204ENST00000463837 POTEMA6NI47 508 aa20.34■□□□□ 0.85
CCDC88B-204ENST00000463837 GOLGA8CPA6NN73 597 aa20.34■□□□□ 0.85
CCDC88B-204ENST00000463837 COPEO14579 308 aa20.34■□□□□ 0.85
CCDC88B-204ENST00000463837 ZBTB5O15062 677 aa20.34■□□□□ 0.85
CCDC88B-204ENST00000463837 SLFN12LQ6IEE8 588 aa20.34■□□□□ 0.85
CCDC88B-204ENST00000463837 XAB2Q9HCS7 855 aaKnown RBP20.34■□□□□ 0.85
CCDC88B-204ENST00000463837 GINM1Q9NU53 330 aa20.34■□□□□ 0.85
CCDC88B-204ENST00000463837 ANAPC7Q9UJX3 599 aa20.34■□□□□ 0.85
CCDC88B-204ENST00000463837 TRIM66O15016 1216 aa20.34■□□□□ 0.85
CCDC88B-204ENST00000463837 FAM160B2Q86V87 743 aa20.34■□□□□ 0.85
CCDC88B-204ENST00000463837 ZC3H18Q86VM9 953 aaKnown RBP20.34■□□□□ 0.85
CCDC88B-204ENST00000463837 MMGT1Q8N4V1 131 aa20.34■□□□□ 0.85
CCDC88B-204ENST00000463837 CCDC68Q9H2F9 335 aa20.34■□□□□ 0.85
CCDC88B-204ENST00000463837 H2AFXP16104 143 aaPredicted RBP20.34■□□□□ 0.85
CCDC88B-204ENST00000463837 FOXO4P98177 505 aa20.34■□□□□ 0.85
CCDC88B-204ENST00000463837 SNF8Q96H20 258 aa20.34■□□□□ 0.85
CCDC88B-204ENST00000463837 KIAA1586Q9HCI6 787 aa20.34■□□□□ 0.85
CCDC88B-204ENST00000463837 BAG5Q9UL15 447 aa20.34■□□□□ 0.85
CCDC88B-204ENST00000463837 SYNJ2BP-COX16A0A087WUM0 186 aa20.33■□□□□ 0.85
CCDC88B-204ENST00000463837 MYBL1P10243 752 aa20.33■□□□□ 0.85
CCDC88B-204ENST00000463837 HSPA9P38646 679 aaKnown RBP20.33■□□□□ 0.85
CCDC88B-204ENST00000463837 ARL4AP40617 200 aa20.33■□□□□ 0.85
CCDC88B-204ENST00000463837 KRT80Q6KB66 452 aa20.33■□□□□ 0.85
CCDC88B-204ENST00000463837 CLEC4GQ6UXB4 293 aa20.33■□□□□ 0.85
CCDC88B-204ENST00000463837 RAD9BQ6WBX8 426 aa20.33■□□□□ 0.85
CCDC88B-204ENST00000463837 KCNV2Q8TDN2 545 aa20.33■□□□□ 0.85
CCDC88B-204ENST00000463837 KCNB2Q92953 911 aa20.33■□□□□ 0.85
CCDC88B-204ENST00000463837 CCT8L2Q96SF2 557 aa20.33■□□□□ 0.85
CCDC88B-204ENST00000463837 COX16Q9P0S2 106 aa20.33■□□□□ 0.85
CCDC88B-204ENST00000463837 A0A0G2JND7 137 aa20.33■□□□□ 0.85
CCDC88B-204ENST00000463837 SLC26A4O43511 780 aa20.33■□□□□ 0.85
CCDC88B-204ENST00000463837 HDAC11Q96DB2 347 aa20.33■□□□□ 0.85
CCDC88B-204ENST00000463837 TRIM56Q9BRZ2 755 aaKnown RBP20.33■□□□□ 0.85
CCDC88B-204ENST00000463837 ISCA1Q9BUE6 129 aa20.33■□□□□ 0.85
CCDC88B-204ENST00000463837 SENP1Q9P0U3 644 aa20.33■□□□□ 0.85
CCDC88B-204ENST00000463837 PI4KBQ9UBF8 816 aa20.33■□□□□ 0.85
CCDC88B-204ENST00000463837 WDR3Q9UNX4 943 aaKnown RBP eCLIP20.33■□□□□ 0.85
CCDC88B-204ENST00000463837 ZNF233A6NK53 670 aa20.33■□□□□ 0.84
CCDC88B-204ENST00000463837 XPOTO43592 962 aaKnown RBP20.33■□□□□ 0.84
CCDC88B-204ENST00000463837 PRPSAP2O60256 369 aa20.33■□□□□ 0.84
CCDC88B-204ENST00000463837 SYDE1Q6ZW31 735 aaPredicted RBP20.33■□□□□ 0.84
CCDC88B-204ENST00000463837 PHF20Q9BVI0 1012 aa20.33■□□□□ 0.84
CCDC88B-204ENST00000463837 MLXIPLQ9NP71 852 aa20.33■□□□□ 0.84
CCDC88B-204ENST00000463837 TLR3O15455 904 aaKnown RBP20.33■□□□□ 0.84
CCDC88B-204ENST00000463837 KRT38O76015 456 aa20.33■□□□□ 0.84
CCDC88B-204ENST00000463837 RHOBTB3O94955 611 aa20.33■□□□□ 0.84
CCDC88B-204ENST00000463837 ART3Q13508 389 aa20.33■□□□□ 0.84
CCDC88B-204ENST00000463837 SUSD4Q5VX71 490 aa20.33■□□□□ 0.84
CCDC88B-204ENST00000463837 SPICE1Q8N0Z3 855 aa20.33■□□□□ 0.84
CCDC88B-204ENST00000463837 DEPDC1BQ8WUY9 529 aa20.33■□□□□ 0.84
CCDC88B-204ENST00000463837 CORO7P57737 925 aa20.32■□□□□ 0.84
CCDC88B-204ENST00000463837 ANKRD40Q6AI12 368 aa20.32■□□□□ 0.84
CCDC88B-204ENST00000463837 BZW1Q7L1Q6 419 aaKnown RBP20.32■□□□□ 0.84
CCDC88B-204ENST00000463837 CALN1Q9BXU9 219 aa20.32■□□□□ 0.84
CCDC88B-204ENST00000463837 NBPF3Q9H094 633 aa20.32■□□□□ 0.84
CCDC88B-204ENST00000463837 LDHAP00338 332 aaKnown RBP20.32■□□□□ 0.84
CCDC88B-204ENST00000463837 MYO1EQ12965 1108 aa20.32■□□□□ 0.84
CCDC88B-204ENST00000463837 SLC18A3Q16572 532 aa20.32■□□□□ 0.84
CCDC88B-204ENST00000463837 FSCBQ5H9T9 825 aa20.32■□□□□ 0.84
CCDC88B-204ENST00000463837 XXYLT1Q8NBI6 393 aa20.32■□□□□ 0.84
CCDC88B-204ENST00000463837 ZNF564Q8TBZ8 553 aaPredicted RBP20.32■□□□□ 0.84
CCDC88B-204ENST00000463837 FXR1P51114 621 aaKnown RBP eCLIP20.32■□□□□ 0.84
CCDC88B-204ENST00000463837 CDR2Q01850 454 aa20.32■□□□□ 0.84
CCDC88B-204ENST00000463837 CHP1Q99653 195 aa20.32■□□□□ 0.84
CCDC88B-204ENST00000463837 ETNK1Q9HBU6 452 aa20.32■□□□□ 0.84
CCDC88B-204ENST00000463837 G3BP2Q9UN86 482 aaKnown RBP20.32■□□□□ 0.84
CCDC88B-204ENST00000463837 TMED1Q13445 227 aa20.32■□□□□ 0.84
CCDC88B-204ENST00000463837 PDIA5Q14554 519 aa20.32■□□□□ 0.84
CCDC88B-204ENST00000463837 PLCB4Q15147 1175 aa20.32■□□□□ 0.84
CCDC88B-204ENST00000463837 FAM193BQ96PV7 902 aaPredicted RBP20.32■□□□□ 0.84
CCDC88B-204ENST00000463837 FAM167BQ9BTA0 163 aa20.32■□□□□ 0.84
CCDC88B-204ENST00000463837 TMPRSS15P98073 1019 aa20.31■□□□□ 0.84
CCDC88B-204ENST00000463837 BIRC2Q13490 618 aa20.31■□□□□ 0.84
CCDC88B-204ENST00000463837 CTTNQ14247 550 aaKnown RBP20.31■□□□□ 0.84
CCDC88B-204ENST00000463837 CFAP36Q96G28 342 aa20.31■□□□□ 0.84
CCDC88B-204ENST00000463837 C7orf25Q9BPX7 421 aa20.31■□□□□ 0.84
CCDC88B-204ENST00000463837 MRPL46Q9H2W6 279 aaKnown RBP20.31■□□□□ 0.84
CCDC88B-204ENST00000463837 PDHA1P08559 390 aa20.31■□□□□ 0.84
CCDC88B-204ENST00000463837 NCF2P19878 526 aaPredicted RBP20.31■□□□□ 0.84
CCDC88B-204ENST00000463837 CCND2P30279 289 aa20.31■□□□□ 0.84
CCDC88B-204ENST00000463837 GRAMD1BQ3KR37 738 aa20.31■□□□□ 0.84
CCDC88B-204ENST00000463837 KLC2Q9H0B6 622 aa20.31■□□□□ 0.84
CCDC88B-204ENST00000463837 DCP1AQ9NPI6 582 aaPredicted RBP20.31■□□□□ 0.84
CCDC88B-204ENST00000463837 ADAM22Q9P0K1 906 aa20.31■□□□□ 0.84
CCDC88B-204ENST00000463837 PPARGC1AQ9UBK2 798 aaKnown RBP20.31■□□□□ 0.84
CCDC88B-204ENST00000463837 ARL2BPQ9Y2Y0 163 aa20.31■□□□□ 0.84
CCDC88B-204ENST00000463837 ZBED1O96006 694 aa20.31■□□□□ 0.84
CCDC88B-204ENST00000463837 IFRD2Q12894 506 aaPredicted RBP20.31■□□□□ 0.84
CCDC88B-204ENST00000463837 CAPRIN2Q6IMN6 1127 aaKnown RBP20.31■□□□□ 0.84
CCDC88B-204ENST00000463837 CCDC137Q6PK04 289 aaKnown RBP20.31■□□□□ 0.84
CCDC88B-204ENST00000463837 OLFM3Q96PB7 478 aa20.31■□□□□ 0.84
CCDC88B-204ENST00000463837 ANLNQ9NQW6 1124 aa20.31■□□□□ 0.84
CCDC88B-204ENST00000463837 CREB3O43889 395 aa20.31■□□□□ 0.84
CCDC88B-204ENST00000463837 PHEXP78562 749 aa20.31■□□□□ 0.84
CCDC88B-204ENST00000463837 DRAP1Q14919 205 aaPredicted RBP20.31■□□□□ 0.84
Retrieved 100 of 20,778 RNA–protein pairs in 44.8 ms