RNA–Protein interactions for RNA: ENST00000452182.1

SCN9A-204, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

TSL 1 (best)

Gene SCN9A, Length 1,618 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-204ENST00000452182 NME8Q8N427 588 aa12.86□□□□□ -0.35
SCN9A-204ENST00000452182 CNNM3Q8NE01 707 aa12.86□□□□□ -0.35
SCN9A-204ENST00000452182 TCP11Q8WWU5 503 aa12.86□□□□□ -0.35
SCN9A-204ENST00000452182 MTRQ99707 1265 aa12.86□□□□□ -0.35
SCN9A-204ENST00000452182 RUSC1Q9BVN2 902 aa12.86□□□□□ -0.35
SCN9A-204ENST00000452182 TRMT13Q9NUP7 481 aaKnown RBP12.86□□□□□ -0.35
SCN9A-204ENST00000452182 ODF2LQ9ULJ1 636 aa12.86□□□□□ -0.35
SCN9A-204ENST00000452182 DCDC2CA8MYV0 355 aa12.85□□□□□ -0.35
SCN9A-204ENST00000452182 KINO60870 393 aaKnown RBP12.85□□□□□ -0.35
SCN9A-204ENST00000452182 CYP2C9P11712 490 aa12.85□□□□□ -0.35
SCN9A-204ENST00000452182 RTP1P59025 263 aa12.85□□□□□ -0.35
SCN9A-204ENST00000452182 CDC42EP1Q00587 391 aa12.85□□□□□ -0.35
SCN9A-204ENST00000452182 DHX8Q14562 1220 aaKnown RBP12.85□□□□□ -0.35
SCN9A-204ENST00000452182 TRIM60Q495X7 471 aa12.85□□□□□ -0.35
SCN9A-204ENST00000452182 IER5Q5VY09 327 aa12.85□□□□□ -0.35
SCN9A-204ENST00000452182 KIAA0319LQ8IZA0 1049 aa12.85□□□□□ -0.35
SCN9A-204ENST00000452182 PAGE5Q96GU1 130 aa12.85□□□□□ -0.35
SCN9A-204ENST00000452182 C7orf25Q9BPX7 421 aa12.85□□□□□ -0.35
SCN9A-204ENST00000452182 TRPV6Q9H1D0 765 aa12.85□□□□□ -0.35
SCN9A-204ENST00000452182 BMP2KQ9NSY1 1161 aaPredicted RBP12.85□□□□□ -0.35
SCN9A-204ENST00000452182 DACT1Q9NYF0 836 aa12.85□□□□□ -0.35
SCN9A-204ENST00000452182 NOD1Q9Y239 953 aa12.85□□□□□ -0.35
SCN9A-204ENST00000452182 MYMKA6NI61 221 aa12.84□□□□□ -0.35
SCN9A-204ENST00000452182 PQBP1O60828 265 aaKnown RBP12.84□□□□□ -0.35
SCN9A-204ENST00000452182 CAND2O75155 1236 aa12.84□□□□□ -0.35
SCN9A-204ENST00000452182 ARL2P36404 184 aa12.84□□□□□ -0.35
SCN9A-204ENST00000452182 TLE2Q04725 743 aa12.84□□□□□ -0.35
SCN9A-204ENST00000452182 RBL2Q08999 1139 aa12.84□□□□□ -0.35
SCN9A-204ENST00000452182 GIT2Q14161 759 aa12.84□□□□□ -0.35
SCN9A-204ENST00000452182 LRRC71Q8N4P6 559 aa12.84□□□□□ -0.35
SCN9A-204ENST00000452182 METTL13Q8N6R0 699 aa12.84□□□□□ -0.35
SCN9A-204ENST00000452182 DDX12PQ92771 950 aa12.84□□□□□ -0.35
SCN9A-204ENST00000452182 KIFAP3Q92845 792 aa12.84□□□□□ -0.35
SCN9A-204ENST00000452182 DNAJC19Q96DA6 116 aa12.84□□□□□ -0.35
SCN9A-204ENST00000452182 ZBTB10Q96DT7 871 aa12.84□□□□□ -0.35
SCN9A-204ENST00000452182 DRC1Q96MC2 740 aa12.84□□□□□ -0.35
SCN9A-204ENST00000452182 TRIM9Q9C026 710 aa12.84□□□□□ -0.35
SCN9A-204ENST00000452182 SUGCTQ9HAC7 445 aa12.84□□□□□ -0.35
SCN9A-204ENST00000452182 C17orf75Q9HAS0 396 aa12.84□□□□□ -0.35
SCN9A-204ENST00000452182 ALPK3Q96L96 1907 aa12.84□□□□□ -0.35
SCN9A-204ENST00000452182 ASAP2O43150 1006 aa12.84□□□□□ -0.35
SCN9A-204ENST00000452182 ZNF131P52739 623 aa12.84□□□□□ -0.35
SCN9A-204ENST00000452182 MDM2Q00987 491 aaPredicted RBP12.84□□□□□ -0.35
SCN9A-204ENST00000452182 FAAP100Q0VG06 881 aa12.84□□□□□ -0.35
SCN9A-204ENST00000452182 MAPK7Q13164 816 aa12.84□□□□□ -0.35
SCN9A-204ENST00000452182 MXD4Q14582 209 aaPredicted RBP12.84□□□□□ -0.35
SCN9A-204ENST00000452182 TRIM71Q2Q1W2 868 aaKnown RBP12.84□□□□□ -0.35
SCN9A-204ENST00000452182 RUFY4Q6ZNE9 571 aa12.84□□□□□ -0.35
SCN9A-204ENST00000452182 RSPH3Q86UC2 560 aa12.84□□□□□ -0.35
SCN9A-204ENST00000452182 DAW1Q8N136 415 aa12.84□□□□□ -0.35
SCN9A-204ENST00000452182 CAGE1Q8TC20 777 aa12.84□□□□□ -0.35
SCN9A-204ENST00000452182 GPT2Q8TD30 523 aa12.84□□□□□ -0.35
SCN9A-204ENST00000452182 PSPC1Q8WXF1 523 aaKnown RBP12.84□□□□□ -0.35
SCN9A-204ENST00000452182 MAP7D2Q96T17 732 aa12.84□□□□□ -0.35
SCN9A-204ENST00000452182 REEP2Q9BRK0 252 aa12.84□□□□□ -0.35
SCN9A-204ENST00000452182 HTATIP2Q9BUP3 242 aa12.84□□□□□ -0.35
SCN9A-204ENST00000452182 KCNG1Q9UIX4 513 aa12.84□□□□□ -0.35
SCN9A-204ENST00000452182 HOOK1Q9UJC3 728 aaKnown RBP12.84□□□□□ -0.35
SCN9A-204ENST00000452182 ATP11BQ9Y2G3 1177 aa12.84□□□□□ -0.35
SCN9A-204ENST00000452182 MYH11P35749 1972 aa12.84□□□□□ -0.35
SCN9A-204ENST00000452182 FRMD3A2A2Y4 597 aa12.83□□□□□ -0.36
SCN9A-204ENST00000452182 HIP1RO75146 1068 aa12.83□□□□□ -0.36
SCN9A-204ENST00000452182 KRT18P05783 430 aaKnown RBP12.83□□□□□ -0.36
SCN9A-204ENST00000452182 CD44P16070 742 aaKnown RBP12.83□□□□□ -0.36
SCN9A-204ENST00000452182 AFMP43652 599 aa12.83□□□□□ -0.36
SCN9A-204ENST00000452182 CLCN3P51790 818 aa12.83□□□□□ -0.36
SCN9A-204ENST00000452182 POU5F1BQ06416 359 aa12.83□□□□□ -0.36
SCN9A-204ENST00000452182 DRP2Q13474 957 aa12.83□□□□□ -0.36
SCN9A-204ENST00000452182 FAM102BQ5T8I3 360 aa12.83□□□□□ -0.36
SCN9A-204ENST00000452182 CCDC155Q8N6L0 562 aa12.83□□□□□ -0.36
SCN9A-204ENST00000452182 DNAJB3Q8WWF6 145 aa12.83□□□□□ -0.36
SCN9A-204ENST00000452182 PRPF31Q8WWY3 499 aaKnown RBP12.83□□□□□ -0.36
SCN9A-204ENST00000452182 DHX38Q92620 1227 aaKnown RBP12.83□□□□□ -0.36
SCN9A-204ENST00000452182 STAMQ92783 540 aa12.83□□□□□ -0.36
SCN9A-204ENST00000452182 TMEM143Q96AN5 459 aa12.83□□□□□ -0.36
SCN9A-204ENST00000452182 SUCLA2Q9P2R7 463 aaPredicted RBP12.83□□□□□ -0.36
SCN9A-204ENST00000452182 PVALEFA0A1B0GWK0 134 aa12.82□□□□□ -0.36
SCN9A-204ENST00000452182 CLTBP09497 229 aa12.82□□□□□ -0.36
SCN9A-204ENST00000452182 BFSP2Q13515 415 aa12.82□□□□□ -0.36
SCN9A-204ENST00000452182 POSTNQ15063 836 aa12.82□□□□□ -0.36
SCN9A-204ENST00000452182 WNT8BQ93098 351 aa12.82□□□□□ -0.36
SCN9A-204ENST00000452182 NTPCRQ9BSD7 190 aaKnown RBP12.82□□□□□ -0.36
SCN9A-204ENST00000452182 FAM49AQ9H0Q0 323 aaPredicted RBP12.82□□□□□ -0.36
SCN9A-204ENST00000452182 POLR3FQ9H1D9 316 aaPredicted RBP12.82□□□□□ -0.36
SCN9A-204ENST00000452182 GPRC5CQ9NQ84 441 aa12.82□□□□□ -0.36
SCN9A-204ENST00000452182 LARSQ9P2J5 1176 aaKnown RBP12.82□□□□□ -0.36
SCN9A-204ENST00000452182 TBX21Q9UL17 535 aa12.82□□□□□ -0.36
SCN9A-204ENST00000452182 COL4A3BPQ9Y5P4 624 aa12.82□□□□□ -0.36
SCN9A-204ENST00000452182 NPHP3-ACAD11A0A0J9YXS1 232 aa12.81□□□□□ -0.36
SCN9A-204ENST00000452182 TBCAO75347 108 aaKnown RBP12.81□□□□□ -0.36
SCN9A-204ENST00000452182 PLS3P13797 630 aa12.81□□□□□ -0.36
SCN9A-204ENST00000452182 GAP43P17677 238 aa12.81□□□□□ -0.36
SCN9A-204ENST00000452182 GLRA2P23416 452 aa12.81□□□□□ -0.36
SCN9A-204ENST00000452182 MRPS6P82932 125 aaKnown RBP12.81□□□□□ -0.36
SCN9A-204ENST00000452182 RAD51AP2Q09MP3 1159 aa12.81□□□□□ -0.36
SCN9A-204ENST00000452182 LAMTOR4Q0VGL1 99 aa12.81□□□□□ -0.36
SCN9A-204ENST00000452182 DPYDQ12882 1025 aa12.81□□□□□ -0.36
SCN9A-204ENST00000452182 CUL4BQ13620 913 aa12.81□□□□□ -0.36
SCN9A-204ENST00000452182 PPP2R5AQ15172 486 aa12.81□□□□□ -0.36
SCN9A-204ENST00000452182 FAM26DQ5JW98 314 aa12.81□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms