RNA–Protein interactions for RNA: ENST00000448833.5

VPS41-208, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 1 (best)

Gene VPS41, Length 711 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-208ENST00000448833 SLC5A5Q92911 643 aa7.97□□□□□ -1.13
VPS41-208ENST00000448833 FAM122AQ96E09 287 aa7.97□□□□□ -1.13
VPS41-208ENST00000448833 FAM20AQ96MK3 541 aa7.97□□□□□ -1.13
VPS41-208ENST00000448833 SCLT1Q96NL6 688 aa7.97□□□□□ -1.13
VPS41-208ENST00000448833 LRFN3Q9BTN0 628 aa7.97□□□□□ -1.13
VPS41-208ENST00000448833 NIFKQ9BYG3 293 aaKnown RBP7.97□□□□□ -1.13
VPS41-208ENST00000448833 TMX1Q9H3N1 280 aa7.97□□□□□ -1.13
VPS41-208ENST00000448833 TLE6Q9H808 572 aa7.97□□□□□ -1.13
VPS41-208ENST00000448833 ALG13Q9NP73 1137 aaKnown RBP7.97□□□□□ -1.13
VPS41-208ENST00000448833 CHST12Q9NRB3 414 aa7.97□□□□□ -1.13
VPS41-208ENST00000448833 VPS54Q9P1Q0 977 aa7.97□□□□□ -1.13
VPS41-208ENST00000448833 CD207Q9UJ71 328 aa7.97□□□□□ -1.13
VPS41-208ENST00000448833 AKT3Q9Y243 479 aa7.97□□□□□ -1.13
VPS41-208ENST00000448833 LZTS1Q9Y250 596 aa7.97□□□□□ -1.13
VPS41-208ENST00000448833 PPME1Q9Y570 386 aa7.97□□□□□ -1.13
VPS41-208ENST00000448833 CCDC194A0A1B0GVG4 234 aa7.96□□□□□ -1.14
VPS41-208ENST00000448833 TBKBP1A7MCY6 615 aa7.96□□□□□ -1.14
VPS41-208ENST00000448833 PRR33A8MZF0 331 aa7.96□□□□□ -1.14
VPS41-208ENST00000448833 DCXO43602 365 aa7.96□□□□□ -1.14
VPS41-208ENST00000448833 MARCH6O60337 910 aa7.96□□□□□ -1.14
VPS41-208ENST00000448833 GPR32O75388 356 aa7.96□□□□□ -1.14
VPS41-208ENST00000448833 VTNP04004 478 aa7.96□□□□□ -1.14
VPS41-208ENST00000448833 ITGB1P05556 798 aa7.96□□□□□ -1.14
VPS41-208ENST00000448833 IL9P15248 144 aa7.96□□□□□ -1.14
VPS41-208ENST00000448833 GCFC2P16383 781 aaKnown RBP7.96□□□□□ -1.14
VPS41-208ENST00000448833 NDUFV1P49821 464 aa7.96□□□□□ -1.14
VPS41-208ENST00000448833 PLCB3Q01970 1234 aa7.96□□□□□ -1.14
VPS41-208ENST00000448833 HYAL1Q12794 435 aa7.96□□□□□ -1.14
VPS41-208ENST00000448833 SMAD4Q13485 552 aaKnown RBP7.96□□□□□ -1.14
VPS41-208ENST00000448833 SMAD2Q15796 467 aaKnown RBP7.96□□□□□ -1.14
VPS41-208ENST00000448833 TRMT1LQ7Z2T5 733 aaKnown RBP7.96□□□□□ -1.14
VPS41-208ENST00000448833 MIER3Q7Z3K6 550 aa7.96□□□□□ -1.14
VPS41-208ENST00000448833 THNSL1Q8IYQ7 743 aa7.96□□□□□ -1.14
VPS41-208ENST00000448833 DAGLBQ8NCG7 672 aa7.96□□□□□ -1.14
VPS41-208ENST00000448833 POF1BQ8WVV4 589 aa7.96□□□□□ -1.14
VPS41-208ENST00000448833 LINC01599Q8WXQ3 324 aa7.96□□□□□ -1.14
VPS41-208ENST00000448833 LENG9Q96B70 501 aa7.96□□□□□ -1.14
VPS41-208ENST00000448833 ZBTB10Q96DT7 871 aa7.96□□□□□ -1.14
VPS41-208ENST00000448833 OSMRQ99650 979 aa7.96□□□□□ -1.14
VPS41-208ENST00000448833 GCOM2Q9BZD3 368 aaPredicted RBP7.96□□□□□ -1.14
VPS41-208ENST00000448833 TMEM117Q9H0C3 514 aa7.96□□□□□ -1.14
VPS41-208ENST00000448833 KCNH6Q9H252 994 aa7.96□□□□□ -1.14
VPS41-208ENST00000448833 IGFLR1Q9H665 355 aa7.96□□□□□ -1.14
VPS41-208ENST00000448833 EPHX3Q9H6B9 360 aa7.96□□□□□ -1.14
VPS41-208ENST00000448833 NGRNQ9NPE2 291 aaKnown RBP7.96□□□□□ -1.14
VPS41-208ENST00000448833 TLR9Q9NR96 1032 aa7.96□□□□□ -1.14
VPS41-208ENST00000448833 PDRG1Q9NUG6 133 aa7.96□□□□□ -1.14
VPS41-208ENST00000448833 STK39Q9UEW8 545 aa7.96□□□□□ -1.14
VPS41-208ENST00000448833 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP7.95□□□□□ -1.14
VPS41-208ENST00000448833 A0A0U1RQF3 1178 aa7.95□□□□□ -1.14
VPS41-208ENST00000448833 TBX3O15119 743 aa7.95□□□□□ -1.14
VPS41-208ENST00000448833 MBTPS2O43462 519 aa7.95□□□□□ -1.14
VPS41-208ENST00000448833 GAS2O43903 313 aaKnown RBP7.95□□□□□ -1.14
VPS41-208ENST00000448833 PSMD10O75832 226 aa7.95□□□□□ -1.14
VPS41-208ENST00000448833 FGF18O76093 207 aa7.95□□□□□ -1.14
VPS41-208ENST00000448833 BAG4O95429 457 aaKnown RBP7.95□□□□□ -1.14
VPS41-208ENST00000448833 EYA4O95677 639 aa7.95□□□□□ -1.14
VPS41-208ENST00000448833 SFPQP23246 707 aaKnown RBP eCLIP7.95□□□□□ -1.14
VPS41-208ENST00000448833 LTBRP36941 435 aa7.95□□□□□ -1.14
VPS41-208ENST00000448833 PLA2G5P39877 138 aa7.95□□□□□ -1.14
VPS41-208ENST00000448833 ALDH7A1P49419 539 aaKnown RBP7.95□□□□□ -1.14
VPS41-208ENST00000448833 ANAPC15P60006 121 aa7.95□□□□□ -1.14
VPS41-208ENST00000448833 PSMC5P62195 406 aa7.95□□□□□ -1.14
VPS41-208ENST00000448833 PRKCEQ02156 737 aa7.95□□□□□ -1.14
VPS41-208ENST00000448833 ZP2Q05996 745 aa7.95□□□□□ -1.14
VPS41-208ENST00000448833 COASYQ13057 564 aa7.95□□□□□ -1.14
VPS41-208ENST00000448833 TOB2Q14106 344 aaPredicted RBP7.95□□□□□ -1.14
VPS41-208ENST00000448833 DSC3Q14574 896 aa7.95□□□□□ -1.14
VPS41-208ENST00000448833 ERICH6BQ5W0A0 696 aa7.95□□□□□ -1.14
VPS41-208ENST00000448833 PPP4R3AQ6IN85 833 aa7.95□□□□□ -1.14
VPS41-208ENST00000448833 OTUD6AQ7L8S5 288 aa7.95□□□□□ -1.14
VPS41-208ENST00000448833 ZNF410Q86VK4 478 aa7.95□□□□□ -1.14
VPS41-208ENST00000448833 FAM228AQ86W67 206 aa7.95□□□□□ -1.14
VPS41-208ENST00000448833 SKAP1Q86WV1 359 aa7.95□□□□□ -1.14
VPS41-208ENST00000448833 LRRC43Q8N309 656 aa7.95□□□□□ -1.14
VPS41-208ENST00000448833 SPRYD3Q8NCJ5 442 aa7.95□□□□□ -1.14
VPS41-208ENST00000448833 RASGRP4Q8TDF6 673 aa7.95□□□□□ -1.14
VPS41-208ENST00000448833 TMEM40Q8WWA1 233 aa7.95□□□□□ -1.14
VPS41-208ENST00000448833 NLRP7Q8WX94 980 aa7.95□□□□□ -1.14
VPS41-208ENST00000448833 SLC7A3Q8WY07 619 aa7.95□□□□□ -1.14
VPS41-208ENST00000448833 MBOAT7Q96N66 472 aa7.95□□□□□ -1.14
VPS41-208ENST00000448833 ZNF558Q96NG5 402 aa7.95□□□□□ -1.14
VPS41-208ENST00000448833 TRAIPQ9BWF2 469 aa7.95□□□□□ -1.14
VPS41-208ENST00000448833 MRPL9Q9BYD2 267 aaKnown RBP7.95□□□□□ -1.14
VPS41-208ENST00000448833 SLKQ9H2G2 1235 aaPredicted RBP7.95□□□□□ -1.14
VPS41-208ENST00000448833 ADAMTS10Q9H324 1103 aa7.95□□□□□ -1.14
VPS41-208ENST00000448833 CDHR5Q9HBB8 845 aa7.95□□□□□ -1.14
VPS41-208ENST00000448833 NCOA5Q9HCD5 579 aaKnown RBP7.95□□□□□ -1.14
VPS41-208ENST00000448833 BRMS1Q9HCU9 246 aa7.95□□□□□ -1.14
VPS41-208ENST00000448833 TYW1Q9NV66 732 aaKnown RBP7.95□□□□□ -1.14
VPS41-208ENST00000448833 DDX25Q9UHL0 483 aaKnown RBP7.95□□□□□ -1.14
VPS41-208ENST00000448833 TRIOO75962 3097 aa7.95□□□□□ -1.14
VPS41-208ENST00000448833 DDX11L8A8MPP1 907 aa7.94□□□□□ -1.14
VPS41-208ENST00000448833 M0R2N6 131 aa7.94□□□□□ -1.14
VPS41-208ENST00000448833 ASAP2O43150 1006 aa7.94□□□□□ -1.14
VPS41-208ENST00000448833 CHMP2AO43633 222 aa7.94□□□□□ -1.14
VPS41-208ENST00000448833 ZNF862O60290 1169 aa7.94□□□□□ -1.14
VPS41-208ENST00000448833 MGEA5O60502 916 aa7.94□□□□□ -1.14
VPS41-208ENST00000448833 PPFIA3O75145 1194 aa7.94□□□□□ -1.14
VPS41-208ENST00000448833 MAFO75444 373 aaPredicted RBP7.94□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms