RNA–Protein interactions for RNA: ENST00000448038.2

SYNE1-213, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 6,001 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-213ENST00000448038 USP50Q70EL3 339 aaPredicted RBP8□□□□□ -1.13
SYNE1-213ENST00000448038 CATSPER3Q86XQ3 398 aa8□□□□□ -1.13
SYNE1-213ENST00000448038 LRRC4Q9HBW1 653 aa8□□□□□ -1.13
SYNE1-213ENST00000448038 FZD1Q9UP38 647 aa8□□□□□ -1.13
SYNE1-213ENST00000448038 TOB1P50616 345 aaPredicted RBP8□□□□□ -1.13
SYNE1-213ENST00000448038 STK4Q13043 487 aa8□□□□□ -1.13
SYNE1-213ENST00000448038 ARID5BQ14865 1188 aa8□□□□□ -1.13
SYNE1-213ENST00000448038 ZNF699Q32M78 642 aa8□□□□□ -1.13
SYNE1-213ENST00000448038 DNAJC21Q5F1R6 531 aaKnown RBP8□□□□□ -1.13
SYNE1-213ENST00000448038 C10orf76Q5T2E6 689 aa8□□□□□ -1.13
SYNE1-213ENST00000448038 KAZNQ674X7 775 aa8□□□□□ -1.13
SYNE1-213ENST00000448038 DNAJC24Q6P3W2 148 aa8□□□□□ -1.13
SYNE1-213ENST00000448038 ALKBH5Q6P6C2 394 aaKnown RBP8□□□□□ -1.13
SYNE1-213ENST00000448038 RSRC2Q7L4I2 434 aaKnown RBP8□□□□□ -1.13
SYNE1-213ENST00000448038 RBAKQ9NYW8 714 aaPredicted RBP8□□□□□ -1.13
SYNE1-213ENST00000448038 PCDHA13Q9Y5I0 950 aa8□□□□□ -1.13
SYNE1-213ENST00000448038 FAM208AQ9UK61 1670 aaKnown RBP8□□□□□ -1.13
SYNE1-213ENST00000448038 TEX33O43247 280 aa8□□□□□ -1.13
SYNE1-213ENST00000448038 PRKCBP05771 671 aa8□□□□□ -1.13
SYNE1-213ENST00000448038 TRIM49P0CI25 452 aa8□□□□□ -1.13
SYNE1-213ENST00000448038 TRIM49CP0CI26 452 aa8□□□□□ -1.13
SYNE1-213ENST00000448038 MXD4Q14582 209 aaPredicted RBP8□□□□□ -1.13
SYNE1-213ENST00000448038 PPP2R5EQ16537 467 aa8□□□□□ -1.13
SYNE1-213ENST00000448038 MOXD1Q6UVY6 613 aa8□□□□□ -1.13
SYNE1-213ENST00000448038 PHLDB2Q86SQ0 1253 aa8□□□□□ -1.13
SYNE1-213ENST00000448038 ADSSL1Q8N142 457 aa8□□□□□ -1.13
SYNE1-213ENST00000448038 UNC45AQ9H3U1 944 aa8□□□□□ -1.13
SYNE1-213ENST00000448038 MROH8Q9H579 483 aa8□□□□□ -1.13
SYNE1-213ENST00000448038 MRPL47Q9HD33 250 aaKnown RBP8□□□□□ -1.13
SYNE1-213ENST00000448038 KCNK9Q9NPC2 374 aa8□□□□□ -1.13
SYNE1-213ENST00000448038 CXCL11O14625 94 aa8□□□□□ -1.13
SYNE1-213ENST00000448038 PGK2P07205 417 aa8□□□□□ -1.13
SYNE1-213ENST00000448038 PLS3P13797 630 aa8□□□□□ -1.13
SYNE1-213ENST00000448038 EMC2Q15006 297 aa8□□□□□ -1.13
SYNE1-213ENST00000448038 RNF187Q5TA31 235 aaPredicted RBP8□□□□□ -1.13
SYNE1-213ENST00000448038 NAA35Q5VZE5 725 aa8□□□□□ -1.13
SYNE1-213ENST00000448038 MICALCLQ6ZW33 695 aa8□□□□□ -1.13
SYNE1-213ENST00000448038 BEST2Q8NFU1 509 aa8□□□□□ -1.13
SYNE1-213ENST00000448038 MRRFQ96E11 262 aaKnown RBP8□□□□□ -1.13
SYNE1-213ENST00000448038 A6NJR5 290 aa7.99□□□□□ -1.13
SYNE1-213ENST00000448038 TAL1P17542 331 aaPredicted RBP7.99□□□□□ -1.13
SYNE1-213ENST00000448038 DSG3P32926 999 aa7.99□□□□□ -1.13
SYNE1-213ENST00000448038 KRT39Q6A163 491 aa7.99□□□□□ -1.13
SYNE1-213ENST00000448038 OR6B2Q6IFH4 312 aa7.99□□□□□ -1.13
SYNE1-213ENST00000448038 EP400NLQ6ZTU2 488 aa7.99□□□□□ -1.13
SYNE1-213ENST00000448038 ARMCX2Q7L311 632 aa7.99□□□□□ -1.13
SYNE1-213ENST00000448038 SAMD3Q8N6K7 520 aa7.99□□□□□ -1.13
SYNE1-213ENST00000448038 POLR3CQ9BUI4 534 aaPredicted RBP7.99□□□□□ -1.13
SYNE1-213ENST00000448038 KATNAL1Q9BW62 490 aa7.99□□□□□ -1.13
SYNE1-213ENST00000448038 ARL1P40616 181 aaPredicted RBP7.99□□□□□ -1.13
SYNE1-213ENST00000448038 NPEPPSP55786 919 aa7.99□□□□□ -1.13
SYNE1-213ENST00000448038 MRPS9P82933 396 aaKnown RBP7.99□□□□□ -1.13
SYNE1-213ENST00000448038 MAP7D3Q8IWC1 876 aa7.99□□□□□ -1.13
SYNE1-213ENST00000448038 TUBE1Q9UJT0 475 aa7.99□□□□□ -1.13
SYNE1-213ENST00000448038 LRRC53A6NM62 1247 aa7.99□□□□□ -1.13
SYNE1-213ENST00000448038 MAGEB2O15479 319 aa7.99□□□□□ -1.13
SYNE1-213ENST00000448038 CSPG5O95196 566 aa7.99□□□□□ -1.13
SYNE1-213ENST00000448038 MOCS3O95396 460 aa7.99□□□□□ -1.13
SYNE1-213ENST00000448038 ARP10275 920 aa7.99□□□□□ -1.13
SYNE1-213ENST00000448038 GTF2F1P35269 517 aaKnown RBP eCLIP7.99□□□□□ -1.13
SYNE1-213ENST00000448038 VPS41P49754 854 aa7.99□□□□□ -1.13
SYNE1-213ENST00000448038 ACTR2P61160 394 aa7.99□□□□□ -1.13
SYNE1-213ENST00000448038 HERVK_113P62684 666 aa7.99□□□□□ -1.13
SYNE1-213ENST00000448038 FMR1Q06787 632 aaKnown RBP eCLIP7.99□□□□□ -1.13
SYNE1-213ENST00000448038 LAMC2Q13753 1193 aa7.99□□□□□ -1.13
SYNE1-213ENST00000448038 ZNF746Q6NUN9 644 aaPredicted RBP7.99□□□□□ -1.13
SYNE1-213ENST00000448038 FRMD5Q7Z6J6 570 aa7.99□□□□□ -1.13
SYNE1-213ENST00000448038 ARFGAP2Q8N6H7 521 aa7.99□□□□□ -1.13
SYNE1-213ENST00000448038 RDM1Q8NG50 284 aa7.99□□□□□ -1.13
SYNE1-213ENST00000448038 CDCA5Q96FF9 252 aa7.99□□□□□ -1.13
SYNE1-213ENST00000448038 ABHD10Q9NUJ1 306 aa7.99□□□□□ -1.13
SYNE1-213ENST00000448038 ERAP1Q9NZ08 941 aa7.99□□□□□ -1.13
SYNE1-213ENST00000448038 ONECUT3O60422 494 aaPredicted RBP7.99□□□□□ -1.13
SYNE1-213ENST00000448038 CASC4Q6P4E1 433 aa7.99□□□□□ -1.13
SYNE1-213ENST00000448038 PDZD4Q76G19 769 aaPredicted RBP7.99□□□□□ -1.13
SYNE1-213ENST00000448038 PLEKHH3Q7Z736 793 aa7.99□□□□□ -1.13
SYNE1-213ENST00000448038 KCTD17Q8N5Z5 321 aa7.99□□□□□ -1.13
SYNE1-213ENST00000448038 SYTL5Q8TDW5 730 aaPredicted RBP7.99□□□□□ -1.13
SYNE1-213ENST00000448038 SPATC1LQ9H0A9 340 aa7.99□□□□□ -1.13
SYNE1-213ENST00000448038 FAM217BQ9NTX9 383 aaPredicted RBP7.99□□□□□ -1.13
SYNE1-213ENST00000448038 HAUS2Q9NVX0 235 aa7.99□□□□□ -1.13
SYNE1-213ENST00000448038 VPS18Q9P253 973 aa7.99□□□□□ -1.13
SYNE1-213ENST00000448038 FRMD4AQ9P2Q2 1039 aaPredicted RBP7.99□□□□□ -1.13
SYNE1-213ENST00000448038 DDX41Q9UJV9 622 aaKnown RBP7.99□□□□□ -1.13
SYNE1-213ENST00000448038 EMSYQ7Z589 1322 aa7.99□□□□□ -1.13
SYNE1-213ENST00000448038 MYBP10242 640 aa7.99□□□□□ -1.13
SYNE1-213ENST00000448038 CIITAP33076 1130 aa7.99□□□□□ -1.13
SYNE1-213ENST00000448038 RFC5P40937 340 aa7.99□□□□□ -1.13
SYNE1-213ENST00000448038 AFDNP55196 1824 aaKnown RBP7.99□□□□□ -1.13
SYNE1-213ENST00000448038 FCGRTP55899 365 aa7.99□□□□□ -1.13
SYNE1-213ENST00000448038 PPP2R5DQ14738 602 aa7.99□□□□□ -1.13
SYNE1-213ENST00000448038 TMEM270Q6UE05 265 aa7.99□□□□□ -1.13
SYNE1-213ENST00000448038 GRK7Q8WTQ7 553 aa7.99□□□□□ -1.13
SYNE1-213ENST00000448038 ATRIPQ8WXE1 791 aa7.99□□□□□ -1.13
SYNE1-213ENST00000448038 ANKEF1Q9NU02 776 aa7.99□□□□□ -1.13
SYNE1-213ENST00000448038 ATRNO75882 1429 aa7.98□□□□□ -1.13
SYNE1-213ENST00000448038 VWA5AO00534 786 aa7.98□□□□□ -1.13
SYNE1-213ENST00000448038 NDC80O14777 642 aa7.98□□□□□ -1.13
SYNE1-213ENST00000448038 HBP1O60381 514 aa7.98□□□□□ -1.13
SYNE1-213ENST00000448038 IVLP07476 585 aa7.98□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms