RNA–Protein interactions for RNA: ENST00000443711.2

USP40-206, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2 BASIC

Gene USP40, Length 628 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-206ENST00000443711 CTAGE1Q96RT6 745 aa17.5■□□□□ 0.39
USP40-206ENST00000443711 MAP7D2Q96T17 732 aa17.5■□□□□ 0.39
USP40-206ENST00000443711 TRIM9Q9C026 710 aa17.5■□□□□ 0.39
USP40-206ENST00000443711 SUCLA2Q9P2R7 463 aaPredicted RBP17.5■□□□□ 0.39
USP40-206ENST00000443711 ODF2LQ9ULJ1 636 aa17.5■□□□□ 0.39
USP40-206ENST00000443711 ATP11BQ9Y2G3 1177 aa17.5■□□□□ 0.39
USP40-206ENST00000443711 ASAP2O43150 1006 aa17.49■□□□□ 0.39
USP40-206ENST00000443711 TBCAO75347 108 aaKnown RBP17.49■□□□□ 0.39
USP40-206ENST00000443711 ARL2P36404 184 aa17.49■□□□□ 0.39
USP40-206ENST00000443711 MDM2Q00987 491 aaPredicted RBP17.49■□□□□ 0.39
USP40-206ENST00000443711 MKRN4PQ13434 485 aaPredicted RBP17.49■□□□□ 0.39
USP40-206ENST00000443711 POSTNQ15063 836 aa17.49■□□□□ 0.39
USP40-206ENST00000443711 SKOR2Q2VWA4 1001 aaPredicted RBP17.49■□□□□ 0.39
USP40-206ENST00000443711 DNAJB3Q8WWF6 145 aa17.49■□□□□ 0.39
USP40-206ENST00000443711 PSPC1Q8WXF1 523 aaKnown RBP17.49■□□□□ 0.39
USP40-206ENST00000443711 DNAJC19Q96DA6 116 aa17.49■□□□□ 0.39
USP40-206ENST00000443711 REEP2Q9BRK0 252 aa17.49■□□□□ 0.39
USP40-206ENST00000443711 FAM49AQ9H0Q0 323 aaPredicted RBP17.49■□□□□ 0.39
USP40-206ENST00000443711 POLR3FQ9H1D9 316 aaPredicted RBP17.49■□□□□ 0.39
USP40-206ENST00000443711 BLZF1Q9H2G9 400 aa17.49■□□□□ 0.39
USP40-206ENST00000443711 FAM13AO94988 1023 aa17.48■□□□□ 0.39
USP40-206ENST00000443711 IDEP14735 1019 aa17.48■□□□□ 0.39
USP40-206ENST00000443711 ASIC1P78348 528 aa17.48■□□□□ 0.39
USP40-206ENST00000443711 CDC42EP1Q00587 391 aa17.48■□□□□ 0.39
USP40-206ENST00000443711 CACNB1Q02641 598 aaPredicted RBP17.48■□□□□ 0.39
USP40-206ENST00000443711 DRP2Q13474 957 aa17.48■□□□□ 0.39
USP40-206ENST00000443711 CUL4BQ13620 913 aa17.48■□□□□ 0.39
USP40-206ENST00000443711 MXD4Q14582 209 aaPredicted RBP17.48■□□□□ 0.39
USP40-206ENST00000443711 RPAINQ86UA6 219 aa17.48■□□□□ 0.39
USP40-206ENST00000443711 CCDC65Q8IXS2 484 aa17.48■□□□□ 0.39
USP40-206ENST00000443711 ZNF710Q8N1W2 664 aa17.48■□□□□ 0.39
USP40-206ENST00000443711 CCDC155Q8N6L0 562 aa17.48■□□□□ 0.39
USP40-206ENST00000443711 PRPF31Q8WWY3 499 aaKnown RBP17.48■□□□□ 0.39
USP40-206ENST00000443711 IFT74Q96LB3 600 aa17.48■□□□□ 0.39
USP40-206ENST00000443711 CLSTN2Q9H4D0 955 aa17.48■□□□□ 0.39
USP40-206ENST00000443711 C17orf75Q9HAS0 396 aa17.48■□□□□ 0.39
USP40-206ENST00000443711 POLD4Q9HCU8 107 aa17.48■□□□□ 0.39
USP40-206ENST00000443711 GPRC5CQ9NQ84 441 aa17.48■□□□□ 0.39
USP40-206ENST00000443711 KCNG1Q9UIX4 513 aa17.48■□□□□ 0.39
USP40-206ENST00000443711 AKT3Q9Y243 479 aa17.48■□□□□ 0.39
USP40-206ENST00000443711 COL4A3BPQ9Y5P4 624 aa17.48■□□□□ 0.39
USP40-206ENST00000443711 PVALEFA0A1B0GWK0 134 aa17.47■□□□□ 0.39
USP40-206ENST00000443711 GAP43P17677 238 aa17.47■□□□□ 0.39
USP40-206ENST00000443711 CASP1P29466 404 aa17.47■□□□□ 0.39
USP40-206ENST00000443711 MAPK7Q13164 816 aa17.47■□□□□ 0.39
USP40-206ENST00000443711 PPP2R5AQ15172 486 aa17.47■□□□□ 0.39
USP40-206ENST00000443711 DAW1Q8N136 415 aa17.47■□□□□ 0.39
USP40-206ENST00000443711 CCDC47Q96A33 483 aaKnown RBP17.47■□□□□ 0.39
USP40-206ENST00000443711 HTATIP2Q9BUP3 242 aa17.47■□□□□ 0.39
USP40-206ENST00000443711 NUP62CLQ9H1M0 184 aa17.47■□□□□ 0.39
USP40-206ENST00000443711 ZHX3Q9H4I2 956 aa17.47■□□□□ 0.39
USP40-206ENST00000443711 PANK4Q9NVE7 773 aa17.47■□□□□ 0.39
USP40-206ENST00000443711 LARSQ9P2J5 1176 aaKnown RBP17.47■□□□□ 0.39
USP40-206ENST00000443711 SFI1A8K8P3 1242 aa17.46■□□□□ 0.39
USP40-206ENST00000443711 RSPH10B2B2RC85 870 aa17.46■□□□□ 0.39
USP40-206ENST00000443711 CAND2O75155 1236 aa17.46■□□□□ 0.39
USP40-206ENST00000443711 SMC2O95347 1197 aa17.46■□□□□ 0.39
USP40-206ENST00000443711 VTNP04004 478 aa17.46■□□□□ 0.39
USP40-206ENST00000443711 PRR29P0C7W0 189 aa17.46■□□□□ 0.39
USP40-206ENST00000443711 RSPH10BP0C881 870 aa17.46■□□□□ 0.39
USP40-206ENST00000443711 ZNF131P52739 623 aa17.46■□□□□ 0.39
USP40-206ENST00000443711 FAAP100Q0VG06 881 aa17.46■□□□□ 0.39
USP40-206ENST00000443711 LAMTOR4Q0VGL1 99 aa17.46■□□□□ 0.39
USP40-206ENST00000443711 DPYDQ12882 1025 aa17.46■□□□□ 0.39
USP40-206ENST00000443711 BFSP2Q13515 415 aa17.46■□□□□ 0.39
USP40-206ENST00000443711 PNOCQ13519 176 aa17.46■□□□□ 0.39
USP40-206ENST00000443711 TFDP1Q14186 410 aa17.46■□□□□ 0.39
USP40-206ENST00000443711 CAMK4Q16566 473 aa17.46■□□□□ 0.39
USP40-206ENST00000443711 TRIM71Q2Q1W2 868 aaKnown RBP17.46■□□□□ 0.39
USP40-206ENST00000443711 KLHL40Q2TBA0 621 aa17.46■□□□□ 0.39
USP40-206ENST00000443711 UNC13DQ70J99 1090 aa17.46■□□□□ 0.39
USP40-206ENST00000443711 RHPN2Q8IUC4 686 aa17.46■□□□□ 0.39
USP40-206ENST00000443711 MYCT1Q8N699 235 aa17.46■□□□□ 0.39
USP40-206ENST00000443711 CAGE1Q8TC20 777 aa17.46■□□□□ 0.39
USP40-206ENST00000443711 ASAP3Q8TDY4 903 aa17.46■□□□□ 0.39
USP40-206ENST00000443711 DHX38Q92620 1227 aaKnown RBP17.46■□□□□ 0.39
USP40-206ENST00000443711 WNT8BQ93098 351 aa17.46■□□□□ 0.39
USP40-206ENST00000443711 PARVGQ9HBI0 331 aa17.46■□□□□ 0.39
USP40-206ENST00000443711 M0QZ92 97 aa17.45■□□□□ 0.38
USP40-206ENST00000443711 RPN1P04843 607 aaKnown RBP17.45■□□□□ 0.38
USP40-206ENST00000443711 CLTBP09497 229 aa17.45■□□□□ 0.38
USP40-206ENST00000443711 PLS3P13797 630 aa17.45■□□□□ 0.38
USP40-206ENST00000443711 GLRA2P23416 452 aa17.45■□□□□ 0.38
USP40-206ENST00000443711 THPOP40225 353 aa17.45■□□□□ 0.38
USP40-206ENST00000443711 MRPS6P82932 125 aaKnown RBP17.45■□□□□ 0.38
USP40-206ENST00000443711 RBL2Q08999 1139 aa17.45■□□□□ 0.38
USP40-206ENST00000443711 HERC4Q5GLZ8 1057 aaPredicted RBP17.45■□□□□ 0.38
USP40-206ENST00000443711 SYAP1Q96A49 352 aaPredicted RBP17.45■□□□□ 0.38
USP40-206ENST00000443711 TMEM39AQ9NV64 488 aa17.45■□□□□ 0.38
USP40-206ENST00000443711 SEL1LQ9UBV2 794 aa17.45■□□□□ 0.38
USP40-206ENST00000443711 FRMD3A2A2Y4 597 aa17.44■□□□□ 0.38
USP40-206ENST00000443711 KLRC4O43908 158 aa17.44■□□□□ 0.38
USP40-206ENST00000443711 TRAK2O60296 914 aa17.44■□□□□ 0.38
USP40-206ENST00000443711 SRGAP2CP0DJJ0 459 aa17.44■□□□□ 0.38
USP40-206ENST00000443711 NAMPTP43490 491 aa17.44■□□□□ 0.38
USP40-206ENST00000443711 GPC3P51654 580 aa17.44■□□□□ 0.38
USP40-206ENST00000443711 SMTNP53814 917 aa17.44■□□□□ 0.38
USP40-206ENST00000443711 PEX3P56589 373 aa17.44■□□□□ 0.38
USP40-206ENST00000443711 NLRP11P59045 1033 aaKnown RBP17.44■□□□□ 0.38
USP40-206ENST00000443711 POU5F1BQ06416 359 aa17.44■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 103.9 ms