RNA–Protein interactions for RNA: ENST00000436346.5

CCDC88A-207, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CCDC88A, Length 9,811 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-207ENST00000436346 PYGLP06737 847 aa12.9□□□□□ -0.34
CCDC88A-207ENST00000436346 PRELPP51888 382 aa12.9□□□□□ -0.34
CCDC88A-207ENST00000436346 PYROXD1Q8WU10 500 aa12.9□□□□□ -0.34
CCDC88A-207ENST00000436346 PLEKHF1Q96S99 279 aa12.9□□□□□ -0.34
CCDC88A-207ENST00000436346 A2ML1A8K2U0 1454 aa12.9□□□□□ -0.34
CCDC88A-207ENST00000436346 CCDC195A0A1B0GUA6 201 aa12.9□□□□□ -0.34
CCDC88A-207ENST00000436346 LUC7L3O95232 432 aaKnown RBP12.9□□□□□ -0.34
CCDC88A-207ENST00000436346 RASEFQ8IZ41 740 aa12.9□□□□□ -0.34
CCDC88A-207ENST00000436346 MT-ND3P03897 115 aa12.9□□□□□ -0.34
CCDC88A-207ENST00000436346 TBCCQ15814 346 aa12.9□□□□□ -0.34
CCDC88A-207ENST00000436346 ARHGEF25Q86VW2 580 aa12.9□□□□□ -0.34
CCDC88A-207ENST00000436346 ACRBPQ8NEB7 543 aa12.9□□□□□ -0.34
CCDC88A-207ENST00000436346 BEST2Q8NFU1 509 aa12.9□□□□□ -0.34
CCDC88A-207ENST00000436346 BHMT2Q9H2M3 363 aa12.9□□□□□ -0.34
CCDC88A-207ENST00000436346 ZSWIM5Q9P217 1185 aa12.9□□□□□ -0.34
CCDC88A-207ENST00000436346 MROH2AA6NES4 1674 aa12.9□□□□□ -0.34
CCDC88A-207ENST00000436346 NMT2O60551 498 aa12.9□□□□□ -0.34
CCDC88A-207ENST00000436346 EFHD1Q9BUP0 239 aa12.9□□□□□ -0.34
CCDC88A-207ENST00000436346 ANTXR1Q9H6X2 564 aa12.9□□□□□ -0.34
CCDC88A-207ENST00000436346 GOLGA8MH3BSY2 632 aa12.9□□□□□ -0.34
CCDC88A-207ENST00000436346 DNAJC6O75061 913 aa12.9□□□□□ -0.34
CCDC88A-207ENST00000436346 CCDC197Q8NCU1 140 aa12.9□□□□□ -0.34
CCDC88A-207ENST00000436346 NUP85Q9BW27 656 aa12.9□□□□□ -0.34
CCDC88A-207ENST00000436346 FARP1Q9Y4F1 1045 aaPredicted RBP12.9□□□□□ -0.34
CCDC88A-207ENST00000436346 PLA2R1Q13018 1463 aa12.9□□□□□ -0.34
CCDC88A-207ENST00000436346 A0A087WWV3 80 aa12.9□□□□□ -0.34
CCDC88A-207ENST00000436346 POTEMA6NI47 508 aa12.9□□□□□ -0.34
CCDC88A-207ENST00000436346 SPATS2Q86XZ4 545 aaKnown RBP12.9□□□□□ -0.34
CCDC88A-207ENST00000436346 RAVER2Q9HCJ3 691 aaKnown RBP12.9□□□□□ -0.34
CCDC88A-207ENST00000436346 TXLNGQ9NUQ3 528 aa12.9□□□□□ -0.34
CCDC88A-207ENST00000436346 AP1M1Q9BXS5 423 aa12.9□□□□□ -0.35
CCDC88A-207ENST00000436346 SYNDIG1Q9H7V2 258 aa12.9□□□□□ -0.35
CCDC88A-207ENST00000436346 PCDHB6Q9Y5E3 794 aa12.9□□□□□ -0.35
CCDC88A-207ENST00000436346 SCINQ9Y6U3 715 aa12.9□□□□□ -0.35
CCDC88A-207ENST00000436346 ARHGEF28Q8N1W1 1705 aaKnown RBP12.89□□□□□ -0.35
CCDC88A-207ENST00000436346 KCNA1Q09470 495 aa12.89□□□□□ -0.35
CCDC88A-207ENST00000436346 SNCBQ16143 134 aa12.89□□□□□ -0.35
CCDC88A-207ENST00000436346 TCP11X2Q5H9J9 407 aa12.89□□□□□ -0.35
CCDC88A-207ENST00000436346 ATG3Q9NT62 314 aa12.89□□□□□ -0.35
CCDC88A-207ENST00000436346 NNMTP40261 264 aa12.89□□□□□ -0.35
CCDC88A-207ENST00000436346 KCNJ6P48051 423 aa12.89□□□□□ -0.35
CCDC88A-207ENST00000436346 YAF2Q8IY57 180 aa12.89□□□□□ -0.35
CCDC88A-207ENST00000436346 SPTLC3Q9NUV7 552 aa12.89□□□□□ -0.35
CCDC88A-207ENST00000436346 GLE1Q53GS7 698 aaKnown RBP12.89□□□□□ -0.35
CCDC88A-207ENST00000436346 CENPUQ71F23 418 aa12.89□□□□□ -0.35
CCDC88A-207ENST00000436346 SLC35F6Q8N357 371 aa12.89□□□□□ -0.35
CCDC88A-207ENST00000436346 NSUN7Q8NE18 718 aaKnown RBP12.89□□□□□ -0.35
CCDC88A-207ENST00000436346 MAP4K1Q92918 833 aa12.89□□□□□ -0.35
CCDC88A-207ENST00000436346 TRIM15Q9C019 465 aa12.89□□□□□ -0.35
CCDC88A-207ENST00000436346 JPH1Q9HDC5 661 aaPredicted RBP12.89□□□□□ -0.35
CCDC88A-207ENST00000436346 MTMR2Q13614 643 aa12.89□□□□□ -0.35
CCDC88A-207ENST00000436346 PBKQ96KB5 322 aa12.89□□□□□ -0.35
CCDC88A-207ENST00000436346 ERCC6L2Q5T890 1561 aa12.89□□□□□ -0.35
CCDC88A-207ENST00000436346 SMARCA1P28370 1054 aa12.89□□□□□ -0.35
CCDC88A-207ENST00000436346 THNSL1Q8IYQ7 743 aa12.89□□□□□ -0.35
CCDC88A-207ENST00000436346 SYNE4Q8N205 404 aa12.89□□□□□ -0.35
CCDC88A-207ENST00000436346 MRFAP1L1Q96HT8 127 aa12.89□□□□□ -0.35
CCDC88A-207ENST00000436346 GPR108Q9NPR9 543 aa12.89□□□□□ -0.35
CCDC88A-207ENST00000436346 FBXO40Q9UH90 709 aa12.89□□□□□ -0.35
CCDC88A-207ENST00000436346 HLFQ16534 295 aa12.89□□□□□ -0.35
CCDC88A-207ENST00000436346 ZSCAN26Q16670 478 aa12.89□□□□□ -0.35
CCDC88A-207ENST00000436346 DCAF4L1Q3SXM0 396 aa12.89□□□□□ -0.35
CCDC88A-207ENST00000436346 NR3C1P04150 777 aa12.89□□□□□ -0.35
CCDC88A-207ENST00000436346 PAGE5Q96GU1 130 aa12.89□□□□□ -0.35
CCDC88A-207ENST00000436346 SFMBT1Q9UHJ3 866 aa12.89□□□□□ -0.35
CCDC88A-207ENST00000436346 ANAPC7Q9UJX3 599 aa12.89□□□□□ -0.35
CCDC88A-207ENST00000436346 CLCA2Q9UQC9 943 aa12.89□□□□□ -0.35
CCDC88A-207ENST00000436346 SYNGAP1Q96PV0 1343 aa12.89□□□□□ -0.35
CCDC88A-207ENST00000436346 CLEC4GQ6UXB4 293 aa12.89□□□□□ -0.35
CCDC88A-207ENST00000436346 DDX53Q86TM3 631 aaKnown RBP12.89□□□□□ -0.35
CCDC88A-207ENST00000436346 PDIK1LQ8N165 341 aa12.89□□□□□ -0.35
CCDC88A-207ENST00000436346 MCPH1Q8NEM0 835 aa12.89□□□□□ -0.35
CCDC88A-207ENST00000436346 IFT88Q13099 833 aa12.88□□□□□ -0.35
CCDC88A-207ENST00000436346 SLC10A5Q5PT55 438 aa12.88□□□□□ -0.35
CCDC88A-207ENST00000436346 STRIP2Q9ULQ0 834 aa12.88□□□□□ -0.35
CCDC88A-207ENST00000436346 PHLPP2Q6ZVD8 1323 aa12.88□□□□□ -0.35
CCDC88A-207ENST00000436346 USP17L15C9J2P7 530 aa12.88□□□□□ -0.35
CCDC88A-207ENST00000436346 USP17L13C9JLJ4 530 aa12.88□□□□□ -0.35
CCDC88A-207ENST00000436346 USP17L11C9JVI0 530 aa12.88□□□□□ -0.35
CCDC88A-207ENST00000436346 USP17L18D6R9N7 530 aa12.88□□□□□ -0.35
CCDC88A-207ENST00000436346 USP17L22D6RA61 530 aa12.88□□□□□ -0.35
CCDC88A-207ENST00000436346 USP17L17D6RBQ6 530 aa12.88□□□□□ -0.35
CCDC88A-207ENST00000436346 USP17L19D6RCP7 530 aa12.88□□□□□ -0.35
CCDC88A-207ENST00000436346 USP17L20D6RJB6 530 aa12.88□□□□□ -0.35
CCDC88A-207ENST00000436346 CYP21A2P08686 494 aa12.88□□□□□ -0.35
CCDC88A-207ENST00000436346 CYP2D6P10635 497 aa12.88□□□□□ -0.35
CCDC88A-207ENST00000436346 HADHAP40939 763 aa12.88□□□□□ -0.35
CCDC88A-207ENST00000436346 EPHB4P54760 987 aa12.88□□□□□ -0.35
CCDC88A-207ENST00000436346 USP17L24Q0WX57 530 aa12.88□□□□□ -0.35
CCDC88A-207ENST00000436346 SUSD4Q5VX71 490 aa12.88□□□□□ -0.35
CCDC88A-207ENST00000436346 USP17L6PQ6QN14 398 aa12.88□□□□□ -0.35
CCDC88A-207ENST00000436346 UTYO14607 1347 aa12.88□□□□□ -0.35
CCDC88A-207ENST00000436346 UBE4BO95155 1302 aa12.88□□□□□ -0.35
CCDC88A-207ENST00000436346 IMPG1Q17R60 797 aa12.88□□□□□ -0.35
CCDC88A-207ENST00000436346 TOGARAM2Q6ZUX3 1019 aa12.88□□□□□ -0.35
CCDC88A-207ENST00000436346 CYFIP1Q7L576 1253 aa12.88□□□□□ -0.35
CCDC88A-207ENST00000436346 CEP95Q96GE4 821 aa12.88□□□□□ -0.35
CCDC88A-207ENST00000436346 ZBTB18Q99592 522 aa12.88□□□□□ -0.35
CCDC88A-207ENST00000436346 TEX12Q9BXU0 123 aa12.88□□□□□ -0.35
CCDC88A-207ENST00000436346 IQANK1A0A1B0GTG1 560 aa12.88□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms