RNA–Protein interactions for RNA: ENST00000433762.1

COL6A3-207, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best)

Gene COL6A3, Length 2,379 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-207ENST00000433762 TRERF1Q96PN7 1200 aa14.87□□□□□ -0.03
COL6A3-207ENST00000433762 FIZ1Q96SL8 496 aa14.87□□□□□ -0.03
COL6A3-207ENST00000433762 STRA6Q9BX79 667 aa14.87□□□□□ -0.03
COL6A3-207ENST00000433762 CARD9Q9H257 536 aa14.87□□□□□ -0.03
COL6A3-207ENST00000433762 PACSIN2Q9UNF0 486 aaPredicted RBP14.87□□□□□ -0.03
COL6A3-207ENST00000433762 FRMD4BQ9Y2L6 1034 aa14.87□□□□□ -0.03
COL6A3-207ENST00000433762 MAPK13O15264 365 aa14.86□□□□□ -0.03
COL6A3-207ENST00000433762 EVI5O60447 810 aa14.86□□□□□ -0.03
COL6A3-207ENST00000433762 SNRPFP62306 86 aaKnown RBP14.86□□□□□ -0.03
COL6A3-207ENST00000433762 PPATQ06203 517 aa14.86□□□□□ -0.03
COL6A3-207ENST00000433762 KIF22Q14807 665 aa14.86□□□□□ -0.03
COL6A3-207ENST00000433762 USH1GQ495M9 461 aa14.86□□□□□ -0.03
COL6A3-207ENST00000433762 PPP1R3FQ6ZSY5 799 aaPredicted RBP14.86□□□□□ -0.03
COL6A3-207ENST00000433762 TADA2BQ86TJ2 420 aa14.86□□□□□ -0.03
COL6A3-207ENST00000433762 C12orf56Q8IXR9 622 aa14.86□□□□□ -0.03
COL6A3-207ENST00000433762 EPN3Q9H201 632 aa14.86□□□□□ -0.03
COL6A3-207ENST00000433762 USP20Q9Y2K6 914 aa14.86□□□□□ -0.03
COL6A3-207ENST00000433762 PFASO15067 1338 aa14.86□□□□□ -0.03
COL6A3-207ENST00000433762 PMM2O15305 246 aa14.85□□□□□ -0.03
COL6A3-207ENST00000433762 PPP1R37O75864 691 aa14.85□□□□□ -0.03
COL6A3-207ENST00000433762 HSPA6P17066 643 aa14.85□□□□□ -0.03
COL6A3-207ENST00000433762 BAG6P46379 1132 aa14.85□□□□□ -0.03
COL6A3-207ENST00000433762 IKQ13123 557 aaPredicted RBP14.85□□□□□ -0.03
COL6A3-207ENST00000433762 MICALCLQ6ZW33 695 aa14.85□□□□□ -0.03
COL6A3-207ENST00000433762 GPIHBP1Q8IV16 184 aa14.85□□□□□ -0.03
COL6A3-207ENST00000433762 MYCT1Q8N699 235 aa14.85□□□□□ -0.03
COL6A3-207ENST00000433762 GOPCQ9HD26 462 aa14.85□□□□□ -0.03
COL6A3-207ENST00000433762 SLTMQ9NWH9 1034 aaKnown RBP eCLIP14.85□□□□□ -0.03
COL6A3-207ENST00000433762 APEX2Q9UBZ4 518 aa14.85□□□□□ -0.03
COL6A3-207ENST00000433762 MRPL11Q9Y3B7 192 aaKnown RBP14.85□□□□□ -0.03
COL6A3-207ENST00000433762 ZSCAN5CA6NGD5 496 aaPredicted RBP14.85□□□□□ -0.03
COL6A3-207ENST00000433762 H0YGN5 161 aa14.85□□□□□ -0.03
COL6A3-207ENST00000433762 GCOM1H8Y6P7 765 aaPredicted RBP14.85□□□□□ -0.03
COL6A3-207ENST00000433762 KRIT1O00522 736 aa14.85□□□□□ -0.03
COL6A3-207ENST00000433762 RAD21O60216 631 aa14.85□□□□□ -0.03
COL6A3-207ENST00000433762 KRT14P02533 472 aa14.85□□□□□ -0.03
COL6A3-207ENST00000433762 POLR2MP0CAP2 368 aa14.85□□□□□ -0.03
COL6A3-207ENST00000433762 CCT5P48643 541 aa14.85□□□□□ -0.03
COL6A3-207ENST00000433762 GALCP54803 685 aa14.85□□□□□ -0.03
COL6A3-207ENST00000433762 CYP4A11Q02928 519 aa14.85□□□□□ -0.03
COL6A3-207ENST00000433762 TCP10Q12799 353 aa14.85□□□□□ -0.03
COL6A3-207ENST00000433762 ITGB3BPQ13352 177 aaPredicted RBP14.85□□□□□ -0.03
COL6A3-207ENST00000433762 CC2D2BQ6DHV5 1058 aa14.85□□□□□ -0.03
COL6A3-207ENST00000433762 KIAA0825Q8IV33 1275 aa14.85□□□□□ -0.03
COL6A3-207ENST00000433762 RHOT2Q8IXI1 618 aa14.85□□□□□ -0.03
COL6A3-207ENST00000433762 LNX1Q8TBB1 728 aaPredicted RBP14.85□□□□□ -0.03
COL6A3-207ENST00000433762 CHURC1Q8WUH1 139 aa14.85□□□□□ -0.03
COL6A3-207ENST00000433762 RIT2Q99578 217 aa14.85□□□□□ -0.03
COL6A3-207ENST00000433762 WDR18Q9BV38 432 aa14.85□□□□□ -0.03
COL6A3-207ENST00000433762 RAB17Q9H0T7 212 aa14.85□□□□□ -0.03
COL6A3-207ENST00000433762 RANBP17Q9H2T7 1088 aaKnown RBP14.85□□□□□ -0.03
COL6A3-207ENST00000433762 PLAAQ9Y263 795 aa14.85□□□□□ -0.03
COL6A3-207ENST00000433762 TMX2Q9Y320 296 aa14.85□□□□□ -0.03
COL6A3-207ENST00000433762 NFS1Q9Y697 457 aa14.85□□□□□ -0.03
COL6A3-207ENST00000433762 ZNF536O15090 1300 aa14.85□□□□□ -0.03
COL6A3-207ENST00000433762 ESYT3A0FGR9 886 aa14.84□□□□□ -0.03
COL6A3-207ENST00000433762 ECE2O60344 883 aa14.84□□□□□ -0.03
COL6A3-207ENST00000433762 VIL1P09327 827 aaKnown RBP14.84□□□□□ -0.03
COL6A3-207ENST00000433762 BCRP11274 1271 aa14.84□□□□□ -0.03
COL6A3-207ENST00000433762 GBP1P32455 592 aa14.84□□□□□ -0.03
COL6A3-207ENST00000433762 MRPS25P82663 173 aaKnown RBP14.84□□□□□ -0.03
COL6A3-207ENST00000433762 TTC31Q49AM3 519 aaPredicted RBP14.84□□□□□ -0.03
COL6A3-207ENST00000433762 DAAM2Q86T65 1068 aa14.84□□□□□ -0.03
COL6A3-207ENST00000433762 FAM160B2Q86V87 743 aa14.84□□□□□ -0.03
COL6A3-207ENST00000433762 KLHL7Q8IXQ5 586 aa14.84□□□□□ -0.03
COL6A3-207ENST00000433762 FAM178BQ8IXR5 827 aa14.84□□□□□ -0.03
COL6A3-207ENST00000433762 U2AF1L4Q8WU68 220 aaKnown RBP14.84□□□□□ -0.03
COL6A3-207ENST00000433762 CTNNBL1Q8WYA6 563 aaPredicted RBP14.84□□□□□ -0.03
COL6A3-207ENST00000433762 AGPAT3Q9NRZ7 376 aa14.84□□□□□ -0.03
COL6A3-207ENST00000433762 RGL1Q9NZL6 768 aa14.84□□□□□ -0.03
COL6A3-207ENST00000433762 AJAP1Q9UKB5 411 aaPredicted RBP14.84□□□□□ -0.03
COL6A3-207ENST00000433762 ANKRD62A6NC57 917 aa14.84□□□□□ -0.03
COL6A3-207ENST00000433762 FAM187AA6NFU0 413 aa14.84□□□□□ -0.03
COL6A3-207ENST00000433762 GH2P01242 217 aa14.84□□□□□ -0.03
COL6A3-207ENST00000433762 MYZAPP0CAP1 466 aa14.84□□□□□ -0.03
COL6A3-207ENST00000433762 LSP1P33241 339 aa14.84□□□□□ -0.03
COL6A3-207ENST00000433762 HSD17B3P37058 310 aa14.84□□□□□ -0.03
COL6A3-207ENST00000433762 EIF3BP55884 814 aaKnown RBP14.84□□□□□ -0.03
COL6A3-207ENST00000433762 POU5F1Q01860 360 aaKnown RBP14.84□□□□□ -0.03
COL6A3-207ENST00000433762 ENOX2Q16206 610 aaKnown RBP14.84□□□□□ -0.03
COL6A3-207ENST00000433762 CEP55Q53EZ4 464 aa14.84□□□□□ -0.03
COL6A3-207ENST00000433762 NIPA1Q7RTP0 329 aa14.84□□□□□ -0.03
COL6A3-207ENST00000433762 DEFB132Q7Z7B7 95 aa14.84□□□□□ -0.03
COL6A3-207ENST00000433762 MORC4Q8TE76 937 aa14.84□□□□□ -0.03
COL6A3-207ENST00000433762 DYDC2Q96IM9 177 aa14.84□□□□□ -0.03
COL6A3-207ENST00000433762 DBNDD1Q9H9R9 158 aa14.84□□□□□ -0.03
COL6A3-207ENST00000433762 DNAJC12Q9UKB3 198 aa14.84□□□□□ -0.03
COL6A3-207ENST00000433762 FAM169AQ9Y6X4 670 aa14.84□□□□□ -0.03
COL6A3-207ENST00000433762 FAM196BA6NMK8 535 aa14.83□□□□□ -0.03
COL6A3-207ENST00000433762 TMCO5BA8MYB1 307 aa14.83□□□□□ -0.03
COL6A3-207ENST00000433762 MIF4GDA9UHW6 222 aaKnown RBP14.83□□□□□ -0.03
COL6A3-207ENST00000433762 CLIC2O15247 247 aa14.83□□□□□ -0.03
COL6A3-207ENST00000433762 GAS7O60861 476 aa14.83□□□□□ -0.03
COL6A3-207ENST00000433762 MDH1P40925 334 aaKnown RBP14.83□□□□□ -0.03
COL6A3-207ENST00000433762 GUCY2FP51841 1108 aa14.83□□□□□ -0.03
COL6A3-207ENST00000433762 DRG2P55039 364 aaKnown RBP14.83□□□□□ -0.03
COL6A3-207ENST00000433762 PTENP60484 403 aa14.83□□□□□ -0.03
COL6A3-207ENST00000433762 HLTFQ14527 1009 aaKnown RBP eCLIP14.83□□□□□ -0.03
COL6A3-207ENST00000433762 DRAP1Q14919 205 aaPredicted RBP14.83□□□□□ -0.03
COL6A3-207ENST00000433762 C11orf63Q6NUN7 778 aa14.83□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms