RNA–Protein interactions for RNA: ENST00000431357.1

USP4-205, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 5

Gene USP4, Length 2,141 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-205ENST00000431357 TRADDQ15628 312 aa12.28□□□□□ -0.44
USP4-205ENST00000431357 C1orf186Q6ZWK4 172 aa12.28□□□□□ -0.44
USP4-205ENST00000431357 HS2ST1Q7LGA3 356 aa12.28□□□□□ -0.44
USP4-205ENST00000431357 YTHDF3Q7Z739 585 aaKnown RBP12.28□□□□□ -0.44
USP4-205ENST00000431357 MYCT1Q8N699 235 aa12.28□□□□□ -0.44
USP4-205ENST00000431357 C3orf20Q8ND61 904 aa12.28□□□□□ -0.44
USP4-205ENST00000431357 RFFLQ8WZ73 363 aa12.28□□□□□ -0.44
USP4-205ENST00000431357 VTI1AQ96AJ9 217 aa12.28□□□□□ -0.44
USP4-205ENST00000431357 AP1M1Q9BXS5 423 aa12.28□□□□□ -0.44
USP4-205ENST00000431357 PARVGQ9HBI0 331 aa12.28□□□□□ -0.44
USP4-205ENST00000431357 FAM198AQ9UFP1 575 aa12.28□□□□□ -0.44
USP4-205ENST00000431357 AJAP1Q9UKB5 411 aaPredicted RBP12.28□□□□□ -0.44
USP4-205ENST00000431357 SIPA1L1O43166 1804 aa12.28□□□□□ -0.44
USP4-205ENST00000431357 F8VZ95 297 aa12.28□□□□□ -0.44
USP4-205ENST00000431357 H0YGN5 161 aa12.28□□□□□ -0.44
USP4-205ENST00000431357 EML1O00423 815 aa12.28□□□□□ -0.44
USP4-205ENST00000431357 CALRP27797 417 aaKnown RBP12.28□□□□□ -0.44
USP4-205ENST00000431357 CTNNA1P35221 906 aaKnown RBP12.28□□□□□ -0.44
USP4-205ENST00000431357 FMO5P49326 533 aa12.28□□□□□ -0.44
USP4-205ENST00000431357 TCP10Q12799 353 aa12.28□□□□□ -0.44
USP4-205ENST00000431357 PPP2R5CQ13362 524 aa12.28□□□□□ -0.44
USP4-205ENST00000431357 MYBPC2Q14324 1141 aa12.28□□□□□ -0.44
USP4-205ENST00000431357 STRIP1Q5VSL9 837 aa12.28□□□□□ -0.44
USP4-205ENST00000431357 OTOP1Q7RTM1 612 aa12.28□□□□□ -0.44
USP4-205ENST00000431357 LNX1Q8TBB1 728 aaPredicted RBP12.28□□□□□ -0.44
USP4-205ENST00000431357 CTNNBL1Q8WYA6 563 aaPredicted RBP12.28□□□□□ -0.44
USP4-205ENST00000431357 EHMT1Q9H9B1 1298 aa12.28□□□□□ -0.44
USP4-205ENST00000431357 DNAJC12Q9UKB3 198 aa12.28□□□□□ -0.44
USP4-205ENST00000431357 ODF2LQ9ULJ1 636 aa12.28□□□□□ -0.44
USP4-205ENST00000431357 FRMD4BQ9Y2L6 1034 aa12.28□□□□□ -0.44
USP4-205ENST00000431357 UTP11Q9Y3A2 253 aaKnown RBP12.28□□□□□ -0.44
USP4-205ENST00000431357 NFS1Q9Y697 457 aa12.28□□□□□ -0.44
USP4-205ENST00000431357 SPATA31A6Q5VVP1 1343 aa12.27□□□□□ -0.44
USP4-205ENST00000431357 ZMYM2Q9UBW7 1377 aa12.27□□□□□ -0.44
USP4-205ENST00000431357 IGLV3-22A0A075B6J6 115 aa12.27□□□□□ -0.45
USP4-205ENST00000431357 SLITRK3O94933 977 aa12.27□□□□□ -0.45
USP4-205ENST00000431357 GUCY1A3Q02108 690 aa12.27□□□□□ -0.45
USP4-205ENST00000431357 RBM26Q5T8P6 1007 aaKnown RBP12.27□□□□□ -0.45
USP4-205ENST00000431357 SH3BP5LQ7L8J4 393 aa12.27□□□□□ -0.45
USP4-205ENST00000431357 NLRP14Q86W24 1093 aa12.27□□□□□ -0.45
USP4-205ENST00000431357 ZNF473Q8WTR7 871 aaKnown RBP12.27□□□□□ -0.45
USP4-205ENST00000431357 NACC1Q96RE7 527 aa12.27□□□□□ -0.45
USP4-205ENST00000431357 DDX47Q9H0S4 455 aaKnown RBP12.27□□□□□ -0.45
USP4-205ENST00000431357 RAB17Q9H0T7 212 aa12.27□□□□□ -0.45
USP4-205ENST00000431357 GOLPH3Q9H4A6 298 aa12.27□□□□□ -0.45
USP4-205ENST00000431357 DMAC2Q9NW81 257 aa12.27□□□□□ -0.45
USP4-205ENST00000431357 RGL1Q9NZL6 768 aa12.27□□□□□ -0.45
USP4-205ENST00000431357 SAMM50Q9Y512 469 aa12.27□□□□□ -0.45
USP4-205ENST00000431357 ADAMTSL1Q8N6G6 1762 aa12.27□□□□□ -0.45
USP4-205ENST00000431357 FAM196BA6NMK8 535 aa12.26□□□□□ -0.45
USP4-205ENST00000431357 OPLAHO14841 1288 aa12.26□□□□□ -0.45
USP4-205ENST00000431357 MEFVO15553 781 aaPredicted RBP12.26□□□□□ -0.45
USP4-205ENST00000431357 PSMD10O75832 226 aa12.26□□□□□ -0.45
USP4-205ENST00000431357 SLURP2P0DP57 97 aa12.26□□□□□ -0.45
USP4-205ENST00000431357 PDE6BP35913 854 aa12.26□□□□□ -0.45
USP4-205ENST00000431357 ZNF131P52739 623 aa12.26□□□□□ -0.45
USP4-205ENST00000431357 SNAP25P60880 206 aa12.26□□□□□ -0.45
USP4-205ENST00000431357 PPATQ06203 517 aa12.26□□□□□ -0.45
USP4-205ENST00000431357 KCNA1Q09470 495 aa12.26□□□□□ -0.45
USP4-205ENST00000431357 DRAP1Q14919 205 aaPredicted RBP12.26□□□□□ -0.45
USP4-205ENST00000431357 UAP1Q16222 522 aaPredicted RBP12.26□□□□□ -0.45
USP4-205ENST00000431357 LRCH2Q5VUJ6 765 aa12.26□□□□□ -0.45
USP4-205ENST00000431357 NAA35Q5VZE5 725 aa12.26□□□□□ -0.45
USP4-205ENST00000431357 GJB7Q6PEY0 223 aa12.26□□□□□ -0.45
USP4-205ENST00000431357 ZNF720Q7Z2F6 126 aa12.26□□□□□ -0.45
USP4-205ENST00000431357 CCDC91Q7Z6B0 441 aa12.26□□□□□ -0.45
USP4-205ENST00000431357 OTUD6BQ8N6M0 293 aa12.26□□□□□ -0.45
USP4-205ENST00000431357 SLC35G2Q8TBE7 412 aa12.26□□□□□ -0.45
USP4-205ENST00000431357 SLC5A5Q92911 643 aa12.26□□□□□ -0.45
USP4-205ENST00000431357 DYDC2Q96IM9 177 aa12.26□□□□□ -0.45
USP4-205ENST00000431357 SYT11Q9BT88 431 aa12.26□□□□□ -0.45
USP4-205ENST00000431357 CARD9Q9H257 536 aa12.26□□□□□ -0.45
USP4-205ENST00000431357 FRMPD4Q14CM0 1322 aa12.26□□□□□ -0.45
USP4-205ENST00000431357 GOLGA6L10A0A0M3HER8 536 aa12.26□□□□□ -0.45
USP4-205ENST00000431357 ENTPD3O75355 529 aa12.26□□□□□ -0.45
USP4-205ENST00000431357 FAM107AO95990 144 aa12.26□□□□□ -0.45
USP4-205ENST00000431357 TNFAIP3P21580 790 aa12.26□□□□□ -0.45
USP4-205ENST00000431357 NMT1P30419 496 aaKnown RBP12.26□□□□□ -0.45
USP4-205ENST00000431357 HOXA13P31271 388 aaPredicted RBP12.26□□□□□ -0.45
USP4-205ENST00000431357 LIG3P49916 1009 aa12.26□□□□□ -0.45
USP4-205ENST00000431357 PRELPP51888 382 aa12.26□□□□□ -0.45
USP4-205ENST00000431357 RBM5P52756 815 aaKnown RBP eCLIP12.26□□□□□ -0.45
USP4-205ENST00000431357 EIF3BP55884 814 aaKnown RBP12.26□□□□□ -0.45
USP4-205ENST00000431357 ZNF844Q08AG5 666 aa12.26□□□□□ -0.45
USP4-205ENST00000431357 CTTNQ14247 550 aaKnown RBP12.26□□□□□ -0.45
USP4-205ENST00000431357 SLC9A9Q8IVB4 645 aa12.26□□□□□ -0.45
USP4-205ENST00000431357 TPH2Q8IWU9 490 aa12.26□□□□□ -0.45
USP4-205ENST00000431357 SUGP1Q8IWZ8 645 aaKnown RBP12.26□□□□□ -0.45
USP4-205ENST00000431357 CCT8L2Q96SF2 557 aa12.26□□□□□ -0.45
USP4-205ENST00000431357 WDR11Q9BZH6 1224 aa12.26□□□□□ -0.45
USP4-205ENST00000431357 RABEP2Q9H5N1 569 aa12.26□□□□□ -0.45
USP4-205ENST00000431357 KCNQ5Q9NR82 932 aa12.26□□□□□ -0.45
USP4-205ENST00000431357 APEX2Q9UBZ4 518 aa12.26□□□□□ -0.45
USP4-205ENST00000431357 AMACRQ9UHK6 382 aa12.26□□□□□ -0.45
USP4-205ENST00000431357 SERPINA10Q9UK55 444 aa12.26□□□□□ -0.45
USP4-205ENST00000431357 PRR12Q9ULL5 1215 aa12.26□□□□□ -0.45
USP4-205ENST00000431357 ANKRD62A6NC57 917 aa12.25□□□□□ -0.45
USP4-205ENST00000431357 FAM187AA6NFU0 413 aa12.25□□□□□ -0.45
USP4-205ENST00000431357 SFI1A8K8P3 1242 aa12.25□□□□□ -0.45
USP4-205ENST00000431357 DDX3YO15523 660 aaKnown RBP12.25□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms