RNA–Protein interactions for RNA: ENST00000427112.6

USP40-203, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene USP40, Length 3,744 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-203ENST00000427112 TOPORSQ9NS56 1045 aaPredicted RBP9.39□□□□□ -0.91
USP40-203ENST00000427112 DDX20Q9UHI6 824 aaKnown RBP9.39□□□□□ -0.91
USP40-203ENST00000427112 AMFRQ9UKV5 643 aa9.39□□□□□ -0.91
USP40-203ENST00000427112 FZD1Q9UP38 647 aa9.39□□□□□ -0.91
USP40-203ENST00000427112 RABGAP1Q9Y3P9 1069 aa9.39□□□□□ -0.91
USP40-203ENST00000427112 KAT6AQ92794 2004 aa9.38□□□□□ -0.91
USP40-203ENST00000427112 SPOPO43791 374 aa9.38□□□□□ -0.91
USP40-203ENST00000427112 TRIM37O94972 964 aa9.38□□□□□ -0.91
USP40-203ENST00000427112 MAP2K1Q02750 393 aaPredicted RBP9.38□□□□□ -0.91
USP40-203ENST00000427112 GBP6Q6ZN66 633 aa9.38□□□□□ -0.91
USP40-203ENST00000427112 CCDC91Q7Z6B0 441 aa9.38□□□□□ -0.91
USP40-203ENST00000427112 ACER1Q8TDN7 264 aa9.38□□□□□ -0.91
USP40-203ENST00000427112 SH3GL2Q99962 352 aa9.38□□□□□ -0.91
USP40-203ENST00000427112 DDX23Q9BUQ8 820 aaKnown RBP9.38□□□□□ -0.91
USP40-203ENST00000427112 EPN3Q9H201 632 aa9.38□□□□□ -0.91
USP40-203ENST00000427112 WDR3Q9UNX4 943 aaKnown RBP eCLIP9.38□□□□□ -0.91
USP40-203ENST00000427112 UTP11Q9Y3A2 253 aaKnown RBP9.38□□□□□ -0.91
USP40-203ENST00000427112 ITGB4P16144 1822 aa9.38□□□□□ -0.91
USP40-203ENST00000427112 XIRP1Q702N8 1843 aaKnown RBP9.38□□□□□ -0.91
USP40-203ENST00000427112 GPR75-ASB3A0A0A6YYF3 556 aa9.38□□□□□ -0.91
USP40-203ENST00000427112 F5H6K3 240 aa9.38□□□□□ -0.91
USP40-203ENST00000427112 PCP11498 1178 aaKnown RBP9.38□□□□□ -0.91
USP40-203ENST00000427112 KLRC3Q07444 240 aa9.38□□□□□ -0.91
USP40-203ENST00000427112 RPAINQ86UA6 219 aa9.38□□□□□ -0.91
USP40-203ENST00000427112 PRCCQ92733 491 aaPredicted RBP9.38□□□□□ -0.91
USP40-203ENST00000427112 GANQ9H2C0 597 aa9.38□□□□□ -0.91
USP40-203ENST00000427112 CUEDC2Q9H467 287 aa9.38□□□□□ -0.91
USP40-203ENST00000427112 A0A1W2PQJ5 194 aa9.38□□□□□ -0.91
USP40-203ENST00000427112 MSH4O15457 936 aa9.38□□□□□ -0.91
USP40-203ENST00000427112 FLOT1O75955 427 aa9.38□□□□□ -0.91
USP40-203ENST00000427112 KRT5P13647 590 aa9.38□□□□□ -0.91
USP40-203ENST00000427112 CHN1P15882 459 aa9.38□□□□□ -0.91
USP40-203ENST00000427112 BIRC2Q13490 618 aa9.38□□□□□ -0.91
USP40-203ENST00000427112 LRCH2Q5VUJ6 765 aa9.38□□□□□ -0.91
USP40-203ENST00000427112 EIF2AK1Q9BQI3 630 aaKnown RBP9.38□□□□□ -0.91
USP40-203ENST00000427112 KCTD10Q9H3F6 313 aa9.38□□□□□ -0.91
USP40-203ENST00000427112 RIOX1Q9H6W3 641 aa9.38□□□□□ -0.91
USP40-203ENST00000427112 RIC8AQ9NPQ8 531 aa9.38□□□□□ -0.91
USP40-203ENST00000427112 SNED1Q8TER0 1413 aa9.37□□□□□ -0.91
USP40-203ENST00000427112 ABCB11O95342 1321 aa9.37□□□□□ -0.91
USP40-203ENST00000427112 A8MUI8 341 aa9.37□□□□□ -0.91
USP40-203ENST00000427112 HLA-DOAP06340 250 aa9.37□□□□□ -0.91
USP40-203ENST00000427112 SCP2P22307 547 aa9.37□□□□□ -0.91
USP40-203ENST00000427112 FXR2P51116 673 aaKnown RBP eCLIP9.37□□□□□ -0.91
USP40-203ENST00000427112 ITGB3BPQ13352 177 aaPredicted RBP9.37□□□□□ -0.91
USP40-203ENST00000427112 NAA25Q14CX7 972 aa9.37□□□□□ -0.91
USP40-203ENST00000427112 ALS2CLQ60I27 953 aa9.37□□□□□ -0.91
USP40-203ENST00000427112 KAZNQ674X7 775 aa9.37□□□□□ -0.91
USP40-203ENST00000427112 CYP4F22Q6NT55 531 aa9.37□□□□□ -0.91
USP40-203ENST00000427112 FAM178BQ8IXR5 827 aa9.37□□□□□ -0.91
USP40-203ENST00000427112 DAGLBQ8NCG7 672 aa9.37□□□□□ -0.91
USP40-203ENST00000427112 FMO2Q99518 471 aa9.37□□□□□ -0.91
USP40-203ENST00000427112 C10orf88Q9H8K7 445 aa9.37□□□□□ -0.91
USP40-203ENST00000427112 SLC40A1Q9NP59 571 aa9.37□□□□□ -0.91
USP40-203ENST00000427112 GDF3Q9NR23 364 aa9.37□□□□□ -0.91
USP40-203ENST00000427112 WRAP73Q9P2S5 460 aaPredicted RBP9.37□□□□□ -0.91
USP40-203ENST00000427112 COG5Q9UP83 839 aa9.37□□□□□ -0.91
USP40-203ENST00000427112 LEMD3Q9Y2U8 911 aa9.37□□□□□ -0.91
USP40-203ENST00000427112 CCDC169A6NNP5 214 aa9.37□□□□□ -0.91
USP40-203ENST00000427112 FTLP02792 175 aaPredicted RBP9.37□□□□□ -0.91
USP40-203ENST00000427112 MMEP08473 750 aa9.37□□□□□ -0.91
USP40-203ENST00000427112 MYCLP12524 364 aaPredicted RBP9.37□□□□□ -0.91
USP40-203ENST00000427112 DR1Q01658 176 aa9.37□□□□□ -0.91
USP40-203ENST00000427112 MCTP2Q6DN12 878 aa9.37□□□□□ -0.91
USP40-203ENST00000427112 VPS36Q86VN1 386 aa9.37□□□□□ -0.91
USP40-203ENST00000427112 SLC17A8Q8NDX2 589 aa9.37□□□□□ -0.91
USP40-203ENST00000427112 SUPT20HQ8NEM7 779 aa9.37□□□□□ -0.91
USP40-203ENST00000427112 SEC16BQ96JE7 1060 aa9.37□□□□□ -0.91
USP40-203ENST00000427112 GLIS2Q9BZE0 524 aaPredicted RBP9.37□□□□□ -0.91
USP40-203ENST00000427112 OSBPL7Q9BZF2 842 aa9.37□□□□□ -0.91
USP40-203ENST00000427112 DNAJC18Q9H819 358 aa9.37□□□□□ -0.91
USP40-203ENST00000427112 TTC7AQ9ULT0 858 aaPredicted RBP9.37□□□□□ -0.91
USP40-203ENST00000427112 MYO3BQ8WXR4 1341 aa9.37□□□□□ -0.91
USP40-203ENST00000427112 GMNCA6NCL1 334 aa9.36□□□□□ -0.91
USP40-203ENST00000427112 K7ENM7 598 aa9.36□□□□□ -0.91
USP40-203ENST00000427112 CYP26A1O43174 497 aa9.36□□□□□ -0.91
USP40-203ENST00000427112 SPATA31C1P0DKV0 1188 aa9.36□□□□□ -0.91
USP40-203ENST00000427112 SEZ6Q53EL9 994 aa9.36□□□□□ -0.91
USP40-203ENST00000427112 DCAF12L1Q5VU92 463 aa9.36□□□□□ -0.91
USP40-203ENST00000427112 GALNT17Q6IS24 598 aa9.36□□□□□ -0.91
USP40-203ENST00000427112 FBXO11Q86XK2 927 aa9.36□□□□□ -0.91
USP40-203ENST00000427112 SLC35C1Q96A29 364 aa9.36□□□□□ -0.91
USP40-203ENST00000427112 CBWD1Q9BRT8 395 aa9.36□□□□□ -0.91
USP40-203ENST00000427112 CPSF2Q9P2I0 782 aaKnown RBP9.36□□□□□ -0.91
USP40-203ENST00000427112 USP54Q70EL1 1684 aa9.36□□□□□ -0.91
USP40-203ENST00000427112 ROBO1Q9Y6N7 1651 aa9.36□□□□□ -0.91
USP40-203ENST00000427112 GSTTP1A0A1W2PQM5 241 aa9.36□□□□□ -0.91
USP40-203ENST00000427112 WDR91A4D1P6 747 aa9.36□□□□□ -0.91
USP40-203ENST00000427112 ARP10275 920 aa9.36□□□□□ -0.91
USP40-203ENST00000427112 RNASELQ05823 741 aaKnown RBP9.36□□□□□ -0.91
USP40-203ENST00000427112 TMEM119Q4V9L6 283 aa9.36□□□□□ -0.91
USP40-203ENST00000427112 ZCWPW2Q504Y3 356 aa9.36□□□□□ -0.91
USP40-203ENST00000427112 ARHGEF19Q8IW93 802 aa9.36□□□□□ -0.91
USP40-203ENST00000427112 LRRC34Q8IZ02 419 aa9.36□□□□□ -0.91
USP40-203ENST00000427112 BUD13Q9BRD0 619 aaKnown RBP eCLIP9.36□□□□□ -0.91
USP40-203ENST00000427112 LZTS2Q9BRK4 669 aa9.36□□□□□ -0.91
USP40-203ENST00000427112 ALG13Q9NP73 1137 aaKnown RBP9.36□□□□□ -0.91
USP40-203ENST00000427112 ASIC3Q9UHC3 531 aa9.36□□□□□ -0.91
USP40-203ENST00000427112 DAAM1Q9Y4D1 1078 aa9.36□□□□□ -0.91
USP40-203ENST00000427112 BCL9LQ86UU0 1499 aa9.36□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms