RNA–Protein interactions for RNA: ENST00000423058.6

SCN1A-204, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SCN1A, Length 8,191 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-204ENST00000423058 SYNGAP1Q96PV0 1343 aa7.31□□□□□ -1.24
SCN1A-204ENST00000423058 PSMD3O43242 534 aa7.31□□□□□ -1.24
SCN1A-204ENST00000423058 KRT38O76015 456 aa7.31□□□□□ -1.24
SCN1A-204ENST00000423058 CPB1P15086 417 aa7.31□□□□□ -1.24
SCN1A-204ENST00000423058 U2AF2P26368 475 aaKnown RBP eCLIP7.31□□□□□ -1.241e-6■■■□□ 14.9
SCN1A-204ENST00000423058 MAP2K2P36507 400 aa7.31□□□□□ -1.24
SCN1A-204ENST00000423058 GUCA1AP43080 201 aaPredicted RBP7.31□□□□□ -1.24
SCN1A-204ENST00000423058 TAP1Q03518 808 aa7.31□□□□□ -1.24
SCN1A-204ENST00000423058 ADCY2Q08462 1091 aa7.31□□□□□ -1.24
SCN1A-204ENST00000423058 NR1H3Q13133 447 aa7.31□□□□□ -1.24
SCN1A-204ENST00000423058 NBPF20Q3BBV1 942 aa7.31□□□□□ -1.24
SCN1A-204ENST00000423058 USPL1Q5W0Q7 1092 aa7.31□□□□□ -1.24
SCN1A-204ENST00000423058 NBPF10Q6P3W6 841 aaKnown RBP7.31□□□□□ -1.24
SCN1A-204ENST00000423058 B4GALNT2Q8NHY0 566 aa7.31□□□□□ -1.24
SCN1A-204ENST00000423058 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP7.31□□□□□ -1.24
SCN1A-204ENST00000423058 SMARCAD1Q9H4L7 1026 aa7.31□□□□□ -1.24
SCN1A-204ENST00000423058 ATG3Q9NT62 314 aa7.31□□□□□ -1.24
SCN1A-204ENST00000423058 C6orf203Q9P0P8 240 aaPredicted RBP7.31□□□□□ -1.24
SCN1A-204ENST00000423058 SYNMO15061 1565 aa7.31□□□□□ -1.24
SCN1A-204ENST00000423058 AATKQ6ZMQ8 1374 aa7.31□□□□□ -1.24
SCN1A-204ENST00000423058 TARSL2A2RTX5 802 aaKnown RBP7.31□□□□□ -1.24
SCN1A-204ENST00000423058 SPDYE5A6NIY4 337 aa7.31□□□□□ -1.24
SCN1A-204ENST00000423058 ZBTB7BO15156 539 aaPredicted RBP7.31□□□□□ -1.24
SCN1A-204ENST00000423058 ASAP2O43150 1006 aa7.31□□□□□ -1.24
SCN1A-204ENST00000423058 CPA1P15085 419 aa7.31□□□□□ -1.24
SCN1A-204ENST00000423058 CCT5P48643 541 aa7.31□□□□□ -1.24
SCN1A-204ENST00000423058 TRADDQ15628 312 aa7.31□□□□□ -1.24
SCN1A-204ENST00000423058 SPDYE7PQ495Y7 208 aa7.31□□□□□ -1.24
SCN1A-204ENST00000423058 HAUS6Q7Z4H7 955 aa7.31□□□□□ -1.24
SCN1A-204ENST00000423058 OOSP2Q86WS3 158 aa7.31□□□□□ -1.24
SCN1A-204ENST00000423058 WDR48Q8TAF3 677 aa7.31□□□□□ -1.24
SCN1A-204ENST00000423058 ASAP3Q8TDY4 903 aa7.31□□□□□ -1.24
SCN1A-204ENST00000423058 P2RX5Q93086 422 aa7.31□□□□□ -1.24
SCN1A-204ENST00000423058 OTULINQ96BN8 352 aa7.31□□□□□ -1.24
SCN1A-204ENST00000423058 ZFYVE19Q96K21 471 aa7.31□□□□□ -1.24
SCN1A-204ENST00000423058 MRPL4Q9BYD3 311 aaKnown RBP7.31□□□□□ -1.24
SCN1A-204ENST00000423058 CASS4Q9NQ75 786 aa7.31□□□□□ -1.24
SCN1A-204ENST00000423058 KIAA0232Q92628 1395 aa7.31□□□□□ -1.24
SCN1A-204ENST00000423058 SYNDIG1LA6NDD5 238 aa7.31□□□□□ -1.24
SCN1A-204ENST00000423058 C5orf58C9J3I9 102 aa7.31□□□□□ -1.24
SCN1A-204ENST00000423058 DYRK3O43781 588 aa7.31□□□□□ -1.24
SCN1A-204ENST00000423058 FDX1P10109 184 aa7.31□□□□□ -1.24
SCN1A-204ENST00000423058 EPHB4P54760 987 aa7.31□□□□□ -1.24
SCN1A-204ENST00000423058 SLC27A3Q5K4L6 730 aa7.31□□□□□ -1.24
SCN1A-204ENST00000423058 PLEKHM3Q6ZWE6 761 aa7.31□□□□□ -1.24
SCN1A-204ENST00000423058 TSPYL6Q8N831 410 aa7.31□□□□□ -1.24
SCN1A-204ENST00000423058 GTF3C2Q8WUA4 911 aaPredicted RBP7.31□□□□□ -1.24
SCN1A-204ENST00000423058 PGBD4Q96DM1 585 aa7.31□□□□□ -1.24
SCN1A-204ENST00000423058 KRCC1Q9NPI7 259 aaPredicted RBP7.31□□□□□ -1.24
SCN1A-204ENST00000423058 APOBEC2Q9Y235 224 aaKnown RBP7.31□□□□□ -1.24
SCN1A-204ENST00000423058 USP19O94966 1318 aa7.3□□□□□ -1.24
SCN1A-204ENST00000423058 ESRRAP11474 423 aaPredicted RBP7.3□□□□□ -1.24
SCN1A-204ENST00000423058 SFNP31947 248 aa7.3□□□□□ -1.24
SCN1A-204ENST00000423058 NCALDP61601 193 aa7.3□□□□□ -1.24
SCN1A-204ENST00000423058 ARHGAP15Q53QZ3 475 aa7.3□□□□□ -1.24
SCN1A-204ENST00000423058 CMTR1Q8N1G2 835 aaKnown RBP7.3□□□□□ -1.24
SCN1A-204ENST00000423058 ORAI2Q96SN7 254 aa7.3□□□□□ -1.24
SCN1A-204ENST00000423058 TSEN34Q9BSV6 310 aaKnown RBP7.3□□□□□ -1.24
SCN1A-204ENST00000423058 PLEKHA4Q9H4M7 779 aa7.3□□□□□ -1.24
SCN1A-204ENST00000423058 PCIF1Q9H4Z3 704 aa7.3□□□□□ -1.24
SCN1A-204ENST00000423058 NGRNQ9NPE2 291 aaKnown RBP7.3□□□□□ -1.24
SCN1A-204ENST00000423058 STXBP3O00186 592 aa7.3□□□□□ -1.24
SCN1A-204ENST00000423058 PFKFB2O60825 505 aa7.3□□□□□ -1.24
SCN1A-204ENST00000423058 ZNF235Q14590 738 aa7.3□□□□□ -1.24
SCN1A-204ENST00000423058 EFHC2Q5JST6 749 aa7.3□□□□□ -1.24
SCN1A-204ENST00000423058 KIRREL3Q8IZU9 778 aa7.3□□□□□ -1.24
SCN1A-204ENST00000423058 SH3GLB2Q9NR46 395 aa7.3□□□□□ -1.24
SCN1A-204ENST00000423058 TBC1D22BQ9NU19 505 aa7.3□□□□□ -1.24
SCN1A-204ENST00000423058 ATP10BO94823 1461 aa7.3□□□□□ -1.24
SCN1A-204ENST00000423058 CFAP69A5D8W1 941 aa7.3□□□□□ -1.24
SCN1A-204ENST00000423058 ATP8B1O43520 1251 aa7.3□□□□□ -1.24
SCN1A-204ENST00000423058 FGAP02671 866 aa7.3□□□□□ -1.24
SCN1A-204ENST00000423058 PHKG2P15735 406 aa7.3□□□□□ -1.24
SCN1A-204ENST00000423058 ARL4CP56559 192 aa7.3□□□□□ -1.24
SCN1A-204ENST00000423058 MDM2Q00987 491 aaPredicted RBP7.3□□□□□ -1.24
SCN1A-204ENST00000423058 TCP11X2Q5H9J9 407 aa7.3□□□□□ -1.24
SCN1A-204ENST00000423058 C16orf62Q7Z3J2 963 aa7.3□□□□□ -1.24
SCN1A-204ENST00000423058 SKAP1Q86WV1 359 aa7.3□□□□□ -1.24
SCN1A-204ENST00000423058 TBCKQ8TEA7 893 aa7.3□□□□□ -1.24
SCN1A-204ENST00000423058 ZNF560Q96MR9 790 aa7.3□□□□□ -1.24
SCN1A-204ENST00000423058 ZWILCHQ9H900 591 aa7.3□□□□□ -1.24
SCN1A-204ENST00000423058 GTSE1Q9NYZ3 720 aa7.3□□□□□ -1.24
SCN1A-204ENST00000423058 ATP5HO75947 161 aa7.3□□□□□ -1.24
SCN1A-204ENST00000423058 FOXD4Q12950 439 aaPredicted RBP7.3□□□□□ -1.24
SCN1A-204ENST00000423058 AP3B2Q13367 1082 aa7.3□□□□□ -1.24
SCN1A-204ENST00000423058 TFDP2Q14188 446 aa7.3□□□□□ -1.24
SCN1A-204ENST00000423058 IRAK1BP1Q5VVH5 260 aa7.3□□□□□ -1.24
SCN1A-204ENST00000423058 PPHLN1Q8NEY8 458 aaKnown RBP7.3□□□□□ -1.24
SCN1A-204ENST00000423058 KLHL29Q96CT2 875 aa7.3□□□□□ -1.24
SCN1A-204ENST00000423058 RMDN2Q96LZ7 410 aa7.3□□□□□ -1.24
SCN1A-204ENST00000423058 PPP1R16BQ96T49 567 aa7.3□□□□□ -1.24
SCN1A-204ENST00000423058 GDAQ9Y2T3 454 aa7.3□□□□□ -1.24
SCN1A-204ENST00000423058 RPAP1Q9BWH6 1393 aaPredicted RBP7.3□□□□□ -1.24
SCN1A-204ENST00000423058 PLEKHG2Q9H7P9 1386 aa7.3□□□□□ -1.24
SCN1A-204ENST00000423058 CFLARO15519 480 aa7.3□□□□□ -1.24
SCN1A-204ENST00000423058 TBC1D12O60347 775 aa7.3□□□□□ -1.24
SCN1A-204ENST00000423058 TADA2AO75478 443 aa7.3□□□□□ -1.24
SCN1A-204ENST00000423058 SUPT3HO75486 399 aa7.3□□□□□ -1.24
SCN1A-204ENST00000423058 GDF11O95390 407 aa7.3□□□□□ -1.24
SCN1A-204ENST00000423058 PLA2G4BP0C869 781 aa7.3□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms