RNA–Protein interactions for RNA: ENST00000415148.6

CD44-206, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 2,369 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-206ENST00000415148 APOBEC3HQ6NTF7 200 aaKnown RBP10.63□□□□□ -0.71
CD44-206ENST00000415148 FBXO11Q86XK2 927 aa10.63□□□□□ -0.71
CD44-206ENST00000415148 GMCL1P1Q8NEA9 526 aa10.63□□□□□ -0.71
CD44-206ENST00000415148 ZC3H12CQ9C0D7 883 aaKnown RBP10.63□□□□□ -0.71
CD44-206ENST00000415148 RAB17Q9H0T7 212 aa10.63□□□□□ -0.71
CD44-206ENST00000415148 IKZF4Q9H2S9 585 aa10.63□□□□□ -0.71
CD44-206ENST00000415148 HAUS2Q9NVX0 235 aa10.63□□□□□ -0.71
CD44-206ENST00000415148 SEL1LQ9UBV2 794 aa10.63□□□□□ -0.71
CD44-206ENST00000415148 VAV3Q9UKW4 847 aa10.63□□□□□ -0.71
CD44-206ENST00000415148 RABGAP1Q9Y3P9 1069 aa10.63□□□□□ -0.71
CD44-206ENST00000415148 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP10.63□□□□□ -0.71
CD44-206ENST00000415148 MEIS1O00470 390 aa10.63□□□□□ -0.71
CD44-206ENST00000415148 PPEF1O14829 653 aaPredicted RBP10.63□□□□□ -0.71
CD44-206ENST00000415148 TGFB1I1O43294 461 aa10.63□□□□□ -0.71
CD44-206ENST00000415148 POU5F1Q01860 360 aaKnown RBP10.63□□□□□ -0.71
CD44-206ENST00000415148 PPATQ06203 517 aa10.63□□□□□ -0.71
CD44-206ENST00000415148 TRAF1Q13077 416 aa10.63□□□□□ -0.71
CD44-206ENST00000415148 CERKLQ49MI3 558 aaPredicted RBP10.63□□□□□ -0.71
CD44-206ENST00000415148 STXBP4Q6ZWJ1 553 aa10.63□□□□□ -0.71
CD44-206ENST00000415148 CCDC91Q7Z6B0 441 aa10.63□□□□□ -0.71
CD44-206ENST00000415148 U2AF1L4Q8WU68 220 aaKnown RBP10.63□□□□□ -0.71
CD44-206ENST00000415148 RFFLQ8WZ73 363 aa10.63□□□□□ -0.71
CD44-206ENST00000415148 RAPGEF5Q92565 580 aa10.63□□□□□ -0.71
CD44-206ENST00000415148 VTI1AQ96AJ9 217 aa10.63□□□□□ -0.71
CD44-206ENST00000415148 GMCL1Q96IK5 515 aa10.63□□□□□ -0.71
CD44-206ENST00000415148 NGLY1Q96IV0 654 aa10.63□□□□□ -0.71
CD44-206ENST00000415148 EIF2AK1Q9BQI3 630 aaKnown RBP10.63□□□□□ -0.71
CD44-206ENST00000415148 KLC4Q9NSK0 619 aa10.63□□□□□ -0.71
CD44-206ENST00000415148 NOVA2Q9UNW9 492 aaKnown RBP10.63□□□□□ -0.71
CD44-206ENST00000415148 GOLGB1Q14789 3259 aaKnown RBP10.63□□□□□ -0.71
CD44-206ENST00000415148 FAM86B1E9PN63 330 aa10.62□□□□□ -0.71
CD44-206ENST00000415148 PIK3CDO00329 1044 aa10.62□□□□□ -0.71
CD44-206ENST00000415148 MSH4O15457 936 aa10.62□□□□□ -0.71
CD44-206ENST00000415148 TTI1O43156 1089 aa10.62□□□□□ -0.71
CD44-206ENST00000415148 TRAPPC3O43617 180 aa10.62□□□□□ -0.71
CD44-206ENST00000415148 EVI5O60447 810 aa10.62□□□□□ -0.71
CD44-206ENST00000415148 NPM3O75607 178 aaKnown RBP10.62□□□□□ -0.71
CD44-206ENST00000415148 FAM86B2P0C5J1 330 aa10.62□□□□□ -0.71
CD44-206ENST00000415148 RFX1P22670 979 aa10.62□□□□□ -0.71
CD44-206ENST00000415148 MAP2K2P36507 400 aa10.62□□□□□ -0.71
CD44-206ENST00000415148 CASP4P49662 377 aa10.62□□□□□ -0.71
CD44-206ENST00000415148 CDR1P51861 262 aa10.62□□□□□ -0.71
CD44-206ENST00000415148 DRG2P55039 364 aaKnown RBP10.62□□□□□ -0.71
CD44-206ENST00000415148 HADHBP55084 474 aaKnown RBP10.62□□□□□ -0.71
CD44-206ENST00000415148 PPP2R2AP63151 447 aa10.62□□□□□ -0.71
CD44-206ENST00000415148 PPP2R5AQ15172 486 aa10.62□□□□□ -0.71
CD44-206ENST00000415148 RINT1Q6NUQ1 792 aa10.62□□□□□ -0.71
CD44-206ENST00000415148 TATDN1Q6P1N9 297 aa10.62□□□□□ -0.71
CD44-206ENST00000415148 TMC3Q7Z5M5 1100 aa10.62□□□□□ -0.71
CD44-206ENST00000415148 FAM186BQ8IYM0 893 aa10.62□□□□□ -0.71
CD44-206ENST00000415148 UBLCP1Q8WVY7 318 aaPredicted RBP10.62□□□□□ -0.71
CD44-206ENST00000415148 CENPTQ96BT3 561 aa10.62□□□□□ -0.71
CD44-206ENST00000415148 TRIM51Q9BSJ1 452 aa10.62□□□□□ -0.71
CD44-206ENST00000415148 SYT11Q9BT88 431 aa10.62□□□□□ -0.71
CD44-206ENST00000415148 TRIM31Q9BZY9 425 aa10.62□□□□□ -0.71
CD44-206ENST00000415148 CARD9Q9H257 536 aa10.62□□□□□ -0.71
CD44-206ENST00000415148 BHMT2Q9H2M3 363 aa10.62□□□□□ -0.71
CD44-206ENST00000415148 DPH5Q9H2P9 285 aa10.62□□□□□ -0.71
CD44-206ENST00000415148 KCND2Q9NZV8 630 aa10.62□□□□□ -0.71
CD44-206ENST00000415148 PI4KBQ9UBF8 816 aa10.62□□□□□ -0.71
CD44-206ENST00000415148 FAM187AA6NFU0 413 aa10.62□□□□□ -0.71
CD44-206ENST00000415148 F8VZ95 297 aa10.62□□□□□ -0.71
CD44-206ENST00000415148 F8W031 263 aaPredicted RBP10.62□□□□□ -0.71
CD44-206ENST00000415148 TULP1O00294 542 aaPredicted RBP10.62□□□□□ -0.71
CD44-206ENST00000415148 PPFIA2O75334 1257 aa10.62□□□□□ -0.71
CD44-206ENST00000415148 PTENP60484 403 aa10.62□□□□□ -0.71
CD44-206ENST00000415148 DDR1Q08345 913 aa10.62□□□□□ -0.71
CD44-206ENST00000415148 PLS1Q14651 629 aa10.62□□□□□ -0.71
CD44-206ENST00000415148 TCEAL1Q15170 157 aa10.62□□□□□ -0.71
CD44-206ENST00000415148 BTNL9Q6UXG8 535 aa10.62□□□□□ -0.71
CD44-206ENST00000415148 LNX1Q8TBB1 728 aaPredicted RBP10.62□□□□□ -0.71
CD44-206ENST00000415148 SLC35G2Q8TBE7 412 aa10.62□□□□□ -0.71
CD44-206ENST00000415148 ZDHHC15Q96MV8 337 aa10.62□□□□□ -0.71
CD44-206ENST00000415148 P2RX7Q99572 595 aaKnown RBP10.62□□□□□ -0.71
CD44-206ENST00000415148 HSD17B14Q9BPX1 270 aa10.62□□□□□ -0.71
CD44-206ENST00000415148 RUSC1Q9BVN2 902 aa10.62□□□□□ -0.71
CD44-206ENST00000415148 TXLNGYQ9BZA5 131 aa10.62□□□□□ -0.71
CD44-206ENST00000415148 CNOT10Q9H9A5 744 aaKnown RBP10.62□□□□□ -0.71
CD44-206ENST00000415148 ACTR5Q9H9F9 607 aaPredicted RBP10.62□□□□□ -0.71
CD44-206ENST00000415148 DMAC2Q9NW81 257 aa10.62□□□□□ -0.71
CD44-206ENST00000415148 SYNPO2Q9UMS6 1093 aa10.62□□□□□ -0.71
CD44-206ENST00000415148 PCDHB13Q9Y5F0 798 aa10.62□□□□□ -0.71
CD44-206ENST00000415148 C5orf60A6NFR6 353 aa10.61□□□□□ -0.71
CD44-206ENST00000415148 RSPH10B2B2RC85 870 aa10.61□□□□□ -0.71
CD44-206ENST00000415148 RIMBP2O15034 1052 aa10.61□□□□□ -0.71
CD44-206ENST00000415148 DDX3YO15523 660 aaKnown RBP10.61□□□□□ -0.71
CD44-206ENST00000415148 FAM13AO94988 1023 aa10.61□□□□□ -0.71
CD44-206ENST00000415148 SHBGP04278 402 aa10.61□□□□□ -0.71
CD44-206ENST00000415148 RSPH10BP0C881 870 aa10.61□□□□□ -0.71
CD44-206ENST00000415148 FMO5P49326 533 aa10.61□□□□□ -0.71
CD44-206ENST00000415148 SMTNP53814 917 aa10.61□□□□□ -0.71
CD44-206ENST00000415148 MAGOHP61326 146 aaKnown RBP10.61□□□□□ -0.71
CD44-206ENST00000415148 MYBPC2Q14324 1141 aa10.61□□□□□ -0.71
CD44-206ENST00000415148 TMEM179Q6ZVK1 233 aa10.61□□□□□ -0.71
CD44-206ENST00000415148 C1orf186Q6ZWK4 172 aa10.61□□□□□ -0.71
CD44-206ENST00000415148 ADAT2Q7Z6V5 191 aaKnown RBP10.61□□□□□ -0.71
CD44-206ENST00000415148 SIAH1Q8IUQ4 282 aa10.61□□□□□ -0.71
CD44-206ENST00000415148 OLIG1Q8TAK6 271 aa10.61□□□□□ -0.71
CD44-206ENST00000415148 CTNNBL1Q8WYA6 563 aaPredicted RBP10.61□□□□□ -0.71
CD44-206ENST00000415148 P3H4Q92791 437 aa10.61□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms