RNA–Protein interactions for RNA: ENST00000409558.8

VPS54-203, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene VPS54, Length 4,337 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-203ENST00000409558 DDX3XO00571 662 aaKnown RBP eCLIP14.57□□□□□ -0.08
VPS54-203ENST00000409558 ATP9AO75110 1047 aa14.57□□□□□ -0.08
VPS54-203ENST00000409558 MYL7Q01449 175 aa14.57□□□□□ -0.08
VPS54-203ENST00000409558 METTL13Q8N6R0 699 aa14.57□□□□□ -0.08
VPS54-203ENST00000409558 BICD1Q96G01 975 aa14.57□□□□□ -0.08
VPS54-203ENST00000409558 NAP1L4Q99733 375 aaKnown RBP14.57□□□□□ -0.08
VPS54-203ENST00000409558 MRPL11Q9Y3B7 192 aaKnown RBP14.57□□□□□ -0.08
VPS54-203ENST00000409558 IGLV3-22A0A075B6J6 115 aa14.57□□□□□ -0.08
VPS54-203ENST00000409558 AGPSO00116 658 aa14.57□□□□□ -0.08
VPS54-203ENST00000409558 FGGP02679 453 aa14.57□□□□□ -0.08
VPS54-203ENST00000409558 ORC2Q13416 577 aaPredicted RBP14.57□□□□□ -0.08
VPS54-203ENST00000409558 CYFIP1Q7L576 1253 aa14.57□□□□□ -0.08
VPS54-203ENST00000409558 NIM1KQ8IY84 436 aa14.57□□□□□ -0.08
VPS54-203ENST00000409558 CASKIN2Q8WXE0 1202 aa14.57□□□□□ -0.08
VPS54-203ENST00000409558 ZIM3Q96PE6 472 aa14.57□□□□□ -0.08
VPS54-203ENST00000409558 SSU72P8A0A1W2PR75 194 aa14.56□□□□□ -0.08
VPS54-203ENST00000409558 MCM3P25205 808 aa14.56□□□□□ -0.08
VPS54-203ENST00000409558 SLC30A5Q8TAD4 765 aa14.56□□□□□ -0.08
VPS54-203ENST00000409558 GMCL1Q96IK5 515 aa14.56□□□□□ -0.08
VPS54-203ENST00000409558 CCDC113Q9H0I3 377 aa14.56□□□□□ -0.08
VPS54-203ENST00000409558 THAP2Q9H0W7 228 aa14.56□□□□□ -0.08
VPS54-203ENST00000409558 VCPKMTQ9H867 229 aa14.56□□□□□ -0.08
VPS54-203ENST00000409558 AGPAT3Q9NRZ7 376 aa14.56□□□□□ -0.08
VPS54-203ENST00000409558 DAPK3O43293 454 aa14.56□□□□□ -0.08
VPS54-203ENST00000409558 FMO5P49326 533 aa14.56□□□□□ -0.08
VPS54-203ENST00000409558 DAB2IPQ5VWQ8 1189 aa14.56□□□□□ -0.08
VPS54-203ENST00000409558 CCDC25Q86WR0 208 aa14.56□□□□□ -0.08
VPS54-203ENST00000409558 CTNNBL1Q8WYA6 563 aaPredicted RBP14.56□□□□□ -0.08
VPS54-203ENST00000409558 ARHGEF26Q96DR7 871 aa14.56□□□□□ -0.08
VPS54-203ENST00000409558 FAM118BQ9BPY3 351 aa14.56□□□□□ -0.08
VPS54-203ENST00000409558 IGSF9BQ9UPX0 1349 aa14.56□□□□□ -0.08
VPS54-203ENST00000409558 PDXKO00764 312 aa14.56□□□□□ -0.08
VPS54-203ENST00000409558 TTI1O43156 1089 aa14.56□□□□□ -0.08
VPS54-203ENST00000409558 KRT5P13647 590 aa14.56□□□□□ -0.08
VPS54-203ENST00000409558 NF2P35240 595 aa14.56□□□□□ -0.08
VPS54-203ENST00000409558 VPS41P49754 854 aa14.56□□□□□ -0.08
VPS54-203ENST00000409558 EPHA7Q15375 998 aa14.56□□□□□ -0.08
VPS54-203ENST00000409558 SEZ6Q53EL9 994 aa14.56□□□□□ -0.08
VPS54-203ENST00000409558 GLG1Q92896 1179 aa14.56□□□□□ -0.08
VPS54-203ENST00000409558 HSD17B14Q9BPX1 270 aa14.56□□□□□ -0.08
VPS54-203ENST00000409558 SBF2Q86WG5 1849 aa14.56□□□□□ -0.08
VPS54-203ENST00000409558 HNRNPH3P31942 346 aaKnown RBP14.55□□□□□ -0.08
VPS54-203ENST00000409558 GUCY1A3Q02108 690 aa14.55□□□□□ -0.08
VPS54-203ENST00000409558 DHX9Q08211 1270 aaKnown RBP14.55□□□□□ -0.08
VPS54-203ENST00000409558 IFT20Q8IY31 132 aa14.55□□□□□ -0.08
VPS54-203ENST00000409558 FAM212AQ96EL1 285 aa14.55□□□□□ -0.08
VPS54-203ENST00000409558 NACC1Q96RE7 527 aa14.55□□□□□ -0.08
VPS54-203ENST00000409558 BUB1BO60566 1050 aaPredicted RBP14.55□□□□□ -0.08
VPS54-203ENST00000409558 CYP3A4P08684 503 aa14.55□□□□□ -0.08
VPS54-203ENST00000409558 UGCGQ16739 394 aa14.55□□□□□ -0.08
VPS54-203ENST00000409558 Q4G0T1 1027 aa14.55□□□□□ -0.08
VPS54-203ENST00000409558 C1orf186Q6ZWK4 172 aa14.55□□□□□ -0.08
VPS54-203ENST00000409558 SLC35G2Q8TBE7 412 aa14.55□□□□□ -0.08
VPS54-203ENST00000409558 BCAS4Q8TDM0 211 aa14.55□□□□□ -0.08
VPS54-203ENST00000409558 INTS2Q9H0H0 1204 aaKnown RBP14.55□□□□□ -0.08
VPS54-203ENST00000409558 TMX2Q9Y320 296 aa14.55□□□□□ -0.08
VPS54-203ENST00000409558 NOC2LQ9Y3T9 749 aaKnown RBP14.55□□□□□ -0.08
VPS54-203ENST00000409558 WNT10BO00744 389 aa14.55□□□□□ -0.08
VPS54-203ENST00000409558 RPS6P62753 249 aaKnown RBP14.55□□□□□ -0.08
VPS54-203ENST00000409558 CXCL9Q07325 125 aa14.55□□□□□ -0.08
VPS54-203ENST00000409558 MTMR1Q13613 665 aa14.55□□□□□ -0.08
VPS54-203ENST00000409558 SLC15A2Q16348 729 aa14.55□□□□□ -0.08
VPS54-203ENST00000409558 DHX38Q92620 1227 aaKnown RBP14.55□□□□□ -0.08
VPS54-203ENST00000409558 UBXN6Q9BZV1 441 aa14.55□□□□□ -0.08
VPS54-203ENST00000409558 PPP1R9AQ9ULJ8 1098 aa14.55□□□□□ -0.08
VPS54-203ENST00000409558 ZHX2Q9Y6X8 837 aa14.55□□□□□ -0.08
VPS54-203ENST00000409558 PSMD10O75832 226 aa14.55□□□□□ -0.08
VPS54-203ENST00000409558 KIF4AO95239 1232 aa14.55□□□□□ -0.08
VPS54-203ENST00000409558 EDRF1Q3B7T1 1238 aa14.55□□□□□ -0.08
VPS54-203ENST00000409558 LRRC31Q6UY01 552 aa14.55□□□□□ -0.08
VPS54-203ENST00000409558 ZNF720Q7Z2F6 126 aa14.55□□□□□ -0.08
VPS54-203ENST00000409558 FRMD5Q7Z6J6 570 aa14.55□□□□□ -0.08
VPS54-203ENST00000409558 BBXQ8WY36 941 aaPredicted RBP14.55□□□□□ -0.08
VPS54-203ENST00000409558 RMDN3Q96TC7 470 aa14.55□□□□□ -0.08
VPS54-203ENST00000409558 CEP350Q5VT06 3117 aa14.55□□□□□ -0.08
VPS54-203ENST00000409558 MYO3BQ8WXR4 1341 aa14.54□□□□□ -0.08
VPS54-203ENST00000409558 SART1O43290 800 aaKnown RBP14.54□□□□□ -0.08
VPS54-203ENST00000409558 RXRBP28702 533 aa14.54□□□□□ -0.08
VPS54-203ENST00000409558 FLT3P36888 993 aa14.54□□□□□ -0.08
VPS54-203ENST00000409558 NT5C2P49902 561 aa14.54□□□□□ -0.08
VPS54-203ENST00000409558 CDK17Q00537 523 aa14.54□□□□□ -0.08
VPS54-203ENST00000409558 NNTQ13423 1086 aa14.54□□□□□ -0.08
VPS54-203ENST00000409558 FAM182AQ5T1J6 154 aa14.54□□□□□ -0.08
VPS54-203ENST00000409558 LLGL2Q6P1M3 1020 aa14.54□□□□□ -0.08
VPS54-203ENST00000409558 GMCL1P1Q8NEA9 526 aa14.54□□□□□ -0.08
VPS54-203ENST00000409558 JDP2Q8WYK2 163 aa14.54□□□□□ -0.08
VPS54-203ENST00000409558 RPGRIP1Q96KN7 1286 aa14.54□□□□□ -0.08
VPS54-203ENST00000409558 PPANQ9NQ55 473 aaKnown RBP14.54□□□□□ -0.08
VPS54-203ENST00000409558 CYP3A7-CYP3A51PA0A087WV96 503 aa14.54□□□□□ -0.08
VPS54-203ENST00000409558 CYP3A7P24462 503 aa14.54□□□□□ -0.08
VPS54-203ENST00000409558 CDR1P51861 262 aa14.54□□□□□ -0.08
VPS54-203ENST00000409558 ARHGEF16Q5VV41 709 aa14.54□□□□□ -0.08
VPS54-203ENST00000409558 PHLDB3Q6NSJ2 640 aa14.54□□□□□ -0.08
VPS54-203ENST00000409558 CBWD2Q8IUF1 395 aa14.54□□□□□ -0.08
VPS54-203ENST00000409558 ARHGEF19Q8IW93 802 aa14.54□□□□□ -0.08
VPS54-203ENST00000409558 LNX1Q8TBB1 728 aaPredicted RBP14.54□□□□□ -0.08
VPS54-203ENST00000409558 PITPNM2Q9BZ72 1349 aa14.54□□□□□ -0.08
VPS54-203ENST00000409558 WDR78Q5VTH9 848 aa14.54□□□□□ -0.08
VPS54-203ENST00000409558 RREB1Q92766 1687 aa14.53□□□□□ -0.08
VPS54-203ENST00000409558 CYP26A1O43174 497 aa14.53□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms