RNA–Protein interactions for RNA: ENST00000401394.5

CTCF-202, Transcript of CCCTC-binding factor, humanhuman

TSL 1 (best) BASIC

Gene CTCF, Length 2,978 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-202ENST00000401394 CCT6BQ92526 530 aa22.77■■□□□ 1.24
CTCF-202ENST00000401394 BAIAP2L1Q9UHR4 511 aa22.77■■□□□ 1.24
CTCF-202ENST00000401394 L3MBTL1Q9Y468 752 aa22.77■■□□□ 1.24
CTCF-202ENST00000401394 DR1Q01658 176 aa22.77■■□□□ 1.23
CTCF-202ENST00000401394 DDR1Q08345 913 aa22.77■■□□□ 1.23
CTCF-202ENST00000401394 PPP1R7Q15435 360 aa22.77■■□□□ 1.23
CTCF-202ENST00000401394 ASPRV1Q53RT3 343 aa22.77■■□□□ 1.23
CTCF-202ENST00000401394 SAMD1Q6SPF0 538 aaPredicted RBP22.77■■□□□ 1.23
CTCF-202ENST00000401394 SLFN11Q7Z7L1 901 aa22.77■■□□□ 1.23
CTCF-202ENST00000401394 LRRC27Q9C0I9 530 aa22.77■■□□□ 1.23
CTCF-202ENST00000401394 NT5C3AQ9H0P0 336 aa22.77■■□□□ 1.23
CTCF-202ENST00000401394 KCNMB3Q9NPA1 279 aa22.77■■□□□ 1.23
CTCF-202ENST00000401394 AMFRQ9UKV5 643 aa22.77■■□□□ 1.23
CTCF-202ENST00000401394 ATF5Q9Y2D1 282 aaPredicted RBP22.77■■□□□ 1.23
CTCF-202ENST00000401394 BHMG1C9JSJ3 638 aaPredicted RBP22.76■■□□□ 1.23
CTCF-202ENST00000401394 SNHG28P0DPA3 235 aa22.76■■□□□ 1.23
CTCF-202ENST00000401394 GKAP1Q5VSY0 366 aaPredicted RBP22.76■■□□□ 1.23
CTCF-202ENST00000401394 CCDC25Q86WR0 208 aa22.76■■□□□ 1.23
CTCF-202ENST00000401394 SH2D3AQ9BRG2 576 aa22.76■■□□□ 1.23
CTCF-202ENST00000401394 WNK3Q9BYP7 1800 aa22.76■■□□□ 1.23
CTCF-202ENST00000401394 PCNTO95613 3336 aa22.76■■□□□ 1.23
CTCF-202ENST00000401394 TTLL1O95922 423 aa22.76■■□□□ 1.23
CTCF-202ENST00000401394 TBC1D1Q86TI0 1168 aaPredicted RBP22.76■■□□□ 1.23
CTCF-202ENST00000401394 RASGEF1CQ8N431 466 aa22.76■■□□□ 1.23
CTCF-202ENST00000401394 BANK1Q8NDB2 785 aa22.76■■□□□ 1.23
CTCF-202ENST00000401394 DNAJC12Q9UKB3 198 aa22.76■■□□□ 1.23
CTCF-202ENST00000401394 NENFQ9UMX5 172 aa22.76■■□□□ 1.23
CTCF-202ENST00000401394 ATXN2Q99700 1313 aaKnown RBP22.76■■□□□ 1.23
CTCF-202ENST00000401394 NAV1Q8NEY1 1877 aa22.75■■□□□ 1.23
CTCF-202ENST00000401394 TTC27Q6P3X3 843 aa22.75■■□□□ 1.23
CTCF-202ENST00000401394 ZDHHC24Q6UX98 284 aa22.75■■□□□ 1.23
CTCF-202ENST00000401394 PNMA8AQ86V59 439 aaPredicted RBP22.75■■□□□ 1.23
CTCF-202ENST00000401394 CDCA7Q9BWT1 371 aaPredicted RBP22.75■■□□□ 1.23
CTCF-202ENST00000401394 ZDHHC18Q9NUE0 388 aa22.75■■□□□ 1.23
CTCF-202ENST00000401394 SUCLA2Q9P2R7 463 aaPredicted RBP22.75■■□□□ 1.23
CTCF-202ENST00000401394 AGAP1Q9UPQ3 857 aa22.75■■□□□ 1.23
CTCF-202ENST00000401394 MEIS2O14770 477 aa22.75■■□□□ 1.23
CTCF-202ENST00000401394 CALCAP01258 141 aa22.75■■□□□ 1.23
CTCF-202ENST00000401394 CLTAP09496 248 aa22.75■■□□□ 1.23
CTCF-202ENST00000401394 CCDC172P0C7W6 258 aa22.75■■□□□ 1.23
CTCF-202ENST00000401394 SHMT1P34896 483 aa22.75■■□□□ 1.23
CTCF-202ENST00000401394 SNCBQ16143 134 aa22.75■■□□□ 1.23
CTCF-202ENST00000401394 SPATS2Q86XZ4 545 aaKnown RBP22.75■■□□□ 1.23
CTCF-202ENST00000401394 ZSWIM2Q8NEG5 633 aa22.75■■□□□ 1.23
CTCF-202ENST00000401394 ABCF3Q9NUQ8 709 aa22.75■■□□□ 1.23
CTCF-202ENST00000401394 EIF4E1BA6NMX2 242 aaKnown RBP22.74■■□□□ 1.23
CTCF-202ENST00000401394 PDE6BP35913 854 aa22.74■■□□□ 1.23
CTCF-202ENST00000401394 GABPAQ06546 454 aa22.74■■□□□ 1.23
CTCF-202ENST00000401394 BIRC3Q13489 604 aa22.74■■□□□ 1.23
CTCF-202ENST00000401394 EDRF1Q3B7T1 1238 aa22.74■■□□□ 1.23
CTCF-202ENST00000401394 FRMD5Q7Z6J6 570 aa22.74■■□□□ 1.23
CTCF-202ENST00000401394 CCDC26Q8TAB7 109 aa22.74■■□□□ 1.23
CTCF-202ENST00000401394 CHMP6Q96FZ7 201 aa22.74■■□□□ 1.23
CTCF-202ENST00000401394 GPR88Q9GZN0 384 aa22.74■■□□□ 1.23
CTCF-202ENST00000401394 ODF2LQ9ULJ1 636 aa22.74■■□□□ 1.23
CTCF-202ENST00000401394 SKAP2O75563 359 aaPredicted RBP22.74■■□□□ 1.23
CTCF-202ENST00000401394 ARHGAP4P98171 946 aa22.74■■□□□ 1.23
CTCF-202ENST00000401394 HYIQ5T013 277 aa22.74■■□□□ 1.23
CTCF-202ENST00000401394 CERS5Q8N5B7 392 aa22.74■■□□□ 1.23
CTCF-202ENST00000401394 USP40Q9NVE5 1235 aa22.74■■□□□ 1.23
CTCF-202ENST00000401394 DNM3Q9UQ16 869 aa22.74■■□□□ 1.23
CTCF-202ENST00000401394 TRAF3IP3Q9Y228 551 aa22.74■■□□□ 1.23
CTCF-202ENST00000401394 LTBP4Q8N2S1 1624 aa22.74■■□□□ 1.23
CTCF-202ENST00000401394 KLRC3Q07444 240 aa22.74■■□□□ 1.23
CTCF-202ENST00000401394 ERMARDQ5T6L9 678 aa22.74■■□□□ 1.23
CTCF-202ENST00000401394 SEPT14Q6ZU15 432 aa22.74■■□□□ 1.23
CTCF-202ENST00000401394 KAT5Q92993 513 aa22.74■■□□□ 1.23
CTCF-202ENST00000401394 PWWP2AQ96N64 755 aa22.74■■□□□ 1.23
CTCF-202ENST00000401394 SMCHD1A6NHR9 2005 aa22.73■■□□□ 1.23
CTCF-202ENST00000401394 VIMP08670 466 aaKnown RBP22.73■■□□□ 1.23
CTCF-202ENST00000401394 RPL21P46778 160 aaKnown RBP22.73■■□□□ 1.23
CTCF-202ENST00000401394 EPM2AIP1Q7L775 607 aaPredicted RBP22.73■■□□□ 1.23
CTCF-202ENST00000401394 JAMLQ86YT9 394 aa22.73■■□□□ 1.23
CTCF-202ENST00000401394 ZC3H3Q8IXZ2 948 aaKnown RBP22.73■■□□□ 1.23
CTCF-202ENST00000401394 GIMAP7Q8NHV1 300 aa22.73■■□□□ 1.23
CTCF-202ENST00000401394 SGSM3Q96HU1 749 aa22.73■■□□□ 1.23
CTCF-202ENST00000401394 CALR3Q96L12 384 aaKnown RBP22.73■■□□□ 1.23
CTCF-202ENST00000401394 MCM8Q9UJA3 840 aa22.73■■□□□ 1.23
CTCF-202ENST00000401394 DAAM1Q9Y4D1 1078 aa22.73■■□□□ 1.23
CTCF-202ENST00000401394 RPTORQ8N122 1335 aa22.73■■□□□ 1.23
CTCF-202ENST00000401394 NOVP48745 357 aa22.73■■□□□ 1.23
CTCF-202ENST00000401394 PMS2P54278 862 aa22.73■■□□□ 1.23
CTCF-202ENST00000401394 DLG4P78352 724 aa22.73■■□□□ 1.23
CTCF-202ENST00000401394 KIF2BQ8N4N8 673 aa22.73■■□□□ 1.23
CTCF-202ENST00000401394 ETNPPLQ8TBG4 499 aa22.73■■□□□ 1.23
CTCF-202ENST00000401394 LENG9Q96B70 501 aa22.73■■□□□ 1.23
CTCF-202ENST00000401394 TLCD1Q96CP7 247 aa22.73■■□□□ 1.23
CTCF-202ENST00000401394 FAM84AQ96KN4 292 aa22.73■■□□□ 1.23
CTCF-202ENST00000401394 ZNF317Q96PQ6 595 aaPredicted RBP22.73■■□□□ 1.23
CTCF-202ENST00000401394 KCNQ5Q9NR82 932 aa22.73■■□□□ 1.23
CTCF-202ENST00000401394 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP22.73■■□□□ 1.23
CTCF-202ENST00000401394 KDM3AQ9Y4C1 1321 aa22.72■■□□□ 1.23
CTCF-202ENST00000401394 A8MUI8 341 aa22.72■■□□□ 1.23
CTCF-202ENST00000401394 FOXN3O00409 490 aaPredicted RBP22.72■■□□□ 1.23
CTCF-202ENST00000401394 PRKCIP41743 596 aa22.72■■□□□ 1.23
CTCF-202ENST00000401394 STAT1P42224 750 aa22.72■■□□□ 1.23
CTCF-202ENST00000401394 DOK7Q18PE1 504 aa22.72■■□□□ 1.23
CTCF-202ENST00000401394 PREPLQ4J6C6 727 aaPredicted RBP22.72■■□□□ 1.23
CTCF-202ENST00000401394 PHLDB2Q86SQ0 1253 aa22.72■■□□□ 1.23
CTCF-202ENST00000401394 SLC30A5Q8TAD4 765 aa22.72■■□□□ 1.23
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms