RNA–Protein interactions for RNA: ENST00000389805.8

SQSTM1-202, Transcript of sequestosome 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SQSTM1, Length 2,986 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-202ENST00000389805 ISCUQ9H1K1 167 aa19.23■□□□□ 0.67
SQSTM1-202ENST00000389805 EMILIN3Q9NT22 766 aa19.23■□□□□ 0.67
SQSTM1-202ENST00000389805 TSKSQ9UJT2 592 aa19.23■□□□□ 0.67
SQSTM1-202ENST00000389805 SLX4Q8IY92 1834 aa19.23■□□□□ 0.67
SQSTM1-202ENST00000389805 CLRN2A0PK11 232 aa19.23■□□□□ 0.67
SQSTM1-202ENST00000389805 YDJCA8MPS7 323 aa19.23■□□□□ 0.67
SQSTM1-202ENST00000389805 GCKP35557 465 aa19.23■□□□□ 0.67
SQSTM1-202ENST00000389805 SLC12A3P55017 1021 aa19.23■□□□□ 0.67
SQSTM1-202ENST00000389805 FAM133BQ5BKY9 247 aaKnown RBP19.23■□□□□ 0.67
SQSTM1-202ENST00000389805 SYDE2Q5VT97 1194 aa19.23■□□□□ 0.67
SQSTM1-202ENST00000389805 CCDC65Q8IXS2 484 aa19.23■□□□□ 0.67
SQSTM1-202ENST00000389805 TRIM31Q9BZY9 425 aa19.23■□□□□ 0.67
SQSTM1-202ENST00000389805 RNF14Q9UBS8 474 aa19.23■□□□□ 0.67
SQSTM1-202ENST00000389805 KDM3AQ9Y4C1 1321 aa19.22■□□□□ 0.67
SQSTM1-202ENST00000389805 CYP3A7-CYP3A51PA0A087WV96 503 aa19.22■□□□□ 0.67
SQSTM1-202ENST00000389805 FAM170AA1A519 330 aa19.22■□□□□ 0.67
SQSTM1-202ENST00000389805 SPATA31C1P0DKV0 1188 aa19.22■□□□□ 0.67
SQSTM1-202ENST00000389805 CYP3A7P24462 503 aa19.22■□□□□ 0.67
SQSTM1-202ENST00000389805 RNF10Q8N5U6 811 aaKnown RBP19.22■□□□□ 0.67
SQSTM1-202ENST00000389805 ADAMTS1Q9UHI8 967 aa19.22■□□□□ 0.67
SQSTM1-202ENST00000389805 GGT7Q9UJ14 662 aa19.22■□□□□ 0.67
SQSTM1-202ENST00000389805 SPDYE3A6NKU9 549 aa19.22■□□□□ 0.67
SQSTM1-202ENST00000389805 DAPK3O43293 454 aa19.22■□□□□ 0.67
SQSTM1-202ENST00000389805 NOL4O94818 638 aa19.22■□□□□ 0.67
SQSTM1-202ENST00000389805 BMP3P12645 472 aa19.22■□□□□ 0.67
SQSTM1-202ENST00000389805 MEI1Q5TIA1 1274 aa19.22■□□□□ 0.67
SQSTM1-202ENST00000389805 ACER1Q8TDN7 264 aa19.22■□□□□ 0.67
SQSTM1-202ENST00000389805 TAF4BQ92750 862 aa19.22■□□□□ 0.67
SQSTM1-202ENST00000389805 SPDL1Q96EA4 605 aa19.22■□□□□ 0.67
SQSTM1-202ENST00000389805 MRIQ9BWK5 157 aa19.22■□□□□ 0.67
SQSTM1-202ENST00000389805 SERPINA10Q9UK55 444 aa19.22■□□□□ 0.67
SQSTM1-202ENST00000389805 EIF4E1BA6NMX2 242 aaKnown RBP19.21■□□□□ 0.67
SQSTM1-202ENST00000389805 TLR2O60603 784 aa19.21■□□□□ 0.67
SQSTM1-202ENST00000389805 CTNND1O60716 968 aaKnown RBP19.21■□□□□ 0.67
SQSTM1-202ENST00000389805 DRD4P21917 467 aa19.21■□□□□ 0.67
SQSTM1-202ENST00000389805 RBM26Q5T8P6 1007 aaKnown RBP19.21■□□□□ 0.67
SQSTM1-202ENST00000389805 RUFY4Q6ZNE9 571 aa19.21■□□□□ 0.67
SQSTM1-202ENST00000389805 DPH5Q9H2P9 285 aa19.21■□□□□ 0.67
SQSTM1-202ENST00000389805 KCTD10Q9H3F6 313 aa19.21■□□□□ 0.67
SQSTM1-202ENST00000389805 RGL1Q9NZL6 768 aa19.21■□□□□ 0.67
SQSTM1-202ENST00000389805 SMIM23A6NLE4 172 aa19.21■□□□□ 0.67
SQSTM1-202ENST00000389805 RSPH10B2B2RC85 870 aa19.21■□□□□ 0.67
SQSTM1-202ENST00000389805 RSPH10BP0C881 870 aa19.21■□□□□ 0.67
SQSTM1-202ENST00000389805 UBXN2AP68543 259 aa19.21■□□□□ 0.67
SQSTM1-202ENST00000389805 LRIG3Q6UXM1 1119 aa19.21■□□□□ 0.67
SQSTM1-202ENST00000389805 LRRC45Q96CN5 670 aa19.21■□□□□ 0.67
SQSTM1-202ENST00000389805 WDR3Q9UNX4 943 aaKnown RBP eCLIP19.21■□□□□ 0.67
SQSTM1-202ENST00000389805 POLR2FP61218 127 aaKnown RBP19.2■□□□□ 0.66
SQSTM1-202ENST00000389805 IFFO1Q0D2I5 559 aa19.2■□□□□ 0.66
SQSTM1-202ENST00000389805 ADAM9Q13443 819 aa19.2■□□□□ 0.66
SQSTM1-202ENST00000389805 BIRC2Q13490 618 aa19.2■□□□□ 0.66
SQSTM1-202ENST00000389805 SLC9C1Q4G0N8 1177 aa19.2■□□□□ 0.66
SQSTM1-202ENST00000389805 C1orf131Q8NDD1 294 aaKnown RBP19.2■□□□□ 0.66
SQSTM1-202ENST00000389805 MAGEC3Q8TD91 643 aa19.2■□□□□ 0.66
SQSTM1-202ENST00000389805 MBOAT7Q96N66 472 aa19.2■□□□□ 0.66
SQSTM1-202ENST00000389805 AMACRQ9UHK6 382 aa19.2■□□□□ 0.66
SQSTM1-202ENST00000389805 GRID2IPA4D2P6 1211 aa19.2■□□□□ 0.66
SQSTM1-202ENST00000389805 SFI1A8K8P3 1242 aa19.2■□□□□ 0.66
SQSTM1-202ENST00000389805 MSH4O15457 936 aa19.2■□□□□ 0.66
SQSTM1-202ENST00000389805 POLD1P28340 1107 aa19.2■□□□□ 0.66
SQSTM1-202ENST00000389805 LACTB2Q53H82 288 aaPredicted RBP19.2■□□□□ 0.66
SQSTM1-202ENST00000389805 CDAN1Q8IWY9 1227 aa19.2■□□□□ 0.66
SQSTM1-202ENST00000389805 SLFN12Q8IYM2 578 aa19.2■□□□□ 0.66
SQSTM1-202ENST00000389805 CCDC63Q8NA47 563 aa19.2■□□□□ 0.66
SQSTM1-202ENST00000389805 LSM14BQ9BX40 385 aaKnown RBP19.2■□□□□ 0.66
SQSTM1-202ENST00000389805 KIF9Q9HAQ2 790 aa19.2■□□□□ 0.66
SQSTM1-202ENST00000389805 PNMA2Q9UL42 364 aa19.2■□□□□ 0.66
SQSTM1-202ENST00000389805 PRR12Q9ULL5 1215 aa19.2■□□□□ 0.66
SQSTM1-202ENST00000389805 A0A087X0T9 212 aa19.2■□□□□ 0.66
SQSTM1-202ENST00000389805 EME2A4GXA9 379 aaPredicted RBP19.2■□□□□ 0.66
SQSTM1-202ENST00000389805 EML1O00423 815 aa19.2■□□□□ 0.66
SQSTM1-202ENST00000389805 SART1O43290 800 aaKnown RBP19.2■□□□□ 0.66
SQSTM1-202ENST00000389805 FAM228BP0C875 321 aa19.2■□□□□ 0.66
SQSTM1-202ENST00000389805 BIRC3Q13489 604 aa19.2■□□□□ 0.66
SQSTM1-202ENST00000389805 GIT2Q14161 759 aa19.2■□□□□ 0.66
SQSTM1-202ENST00000389805 NAB2Q15742 525 aa19.2■□□□□ 0.66
SQSTM1-202ENST00000389805 ZYXQ15942 572 aaKnown RBP19.2■□□□□ 0.66
SQSTM1-202ENST00000389805 REEP2Q9BRK0 252 aa19.2■□□□□ 0.66
SQSTM1-202ENST00000389805 GLT8D2Q9H1C3 349 aa19.2■□□□□ 0.66
SQSTM1-202ENST00000389805 IKZF4Q9H2S9 585 aa19.2■□□□□ 0.66
SQSTM1-202ENST00000389805 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP19.2■□□□□ 0.66
SQSTM1-202ENST00000389805 C10orf71Q711Q0 1435 aa19.19■□□□□ 0.66
SQSTM1-202ENST00000389805 C5orf60A6NFR6 353 aa19.19■□□□□ 0.66
SQSTM1-202ENST00000389805 SRRM3A6NNA2 597 aaPredicted RBP19.19■□□□□ 0.66
SQSTM1-202ENST00000389805 ZBTB39O15060 712 aa19.19■□□□□ 0.66
SQSTM1-202ENST00000389805 PPIP5K2O43314 1243 aa19.19■□□□□ 0.66
SQSTM1-202ENST00000389805 ANP32DO95626 131 aa19.19■□□□□ 0.66
SQSTM1-202ENST00000389805 ITGA4P13612 1032 aa19.19■□□□□ 0.66
SQSTM1-202ENST00000389805 DHX9Q08211 1270 aaKnown RBP19.19■□□□□ 0.66
SQSTM1-202ENST00000389805 AP3B2Q13367 1082 aa19.19■□□□□ 0.66
SQSTM1-202ENST00000389805 RAPGEF1Q13905 1077 aa19.19■□□□□ 0.66
SQSTM1-202ENST00000389805 FAM83BQ5T0W9 1011 aa19.19■□□□□ 0.66
SQSTM1-202ENST00000389805 GMCL1P1Q8NEA9 526 aa19.19■□□□□ 0.66
SQSTM1-202ENST00000389805 GMCL1Q96IK5 515 aa19.19■□□□□ 0.66
SQSTM1-202ENST00000389805 SELENOSQ9BQE4 189 aa19.19■□□□□ 0.66
SQSTM1-202ENST00000389805 CELF4Q9BZC1 486 aaKnown RBP19.19■□□□□ 0.66
SQSTM1-202ENST00000389805 UTP18Q9Y5J1 556 aaKnown RBP eCLIP19.19■□□□□ 0.66
SQSTM1-202ENST00000389805 CCT8L1PA6NM43 557 aa19.19■□□□□ 0.66
SQSTM1-202ENST00000389805 DNAJC8O75937 253 aaPredicted RBP19.19■□□□□ 0.66
SQSTM1-202ENST00000389805 RPS6KA1Q15418 735 aa19.19■□□□□ 0.66
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms