RNA–Protein interactions for RNA: ENST00000384622.1

RNU6-540P-201, Transcript of RNA, U6 small nuclear 540, pseudogene, humanhuman

BASIC

Gene RNU6-540P, Length 101 nt, Biotype snRNA, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU6-540P-201ENST00000384622 ZDHHC15Q96MV8 337 aa0.49□□□□□ -2.33
RNU6-540P-201ENST00000384622 FAM129BQ96TA1 746 aa0.49□□□□□ -2.33
RNU6-540P-201ENST00000384622 TIMP4Q99727 224 aa0.49□□□□□ -2.33
RNU6-540P-201ENST00000384622 NOL6Q9H6R4 1146 aaKnown RBP0.49□□□□□ -2.33
RNU6-540P-201ENST00000384622 MYOTQ9UBF9 498 aa0.49□□□□□ -2.33
RNU6-540P-201ENST00000384622 COA3Q9Y2R0 106 aaPredicted RBP0.49□□□□□ -2.33
RNU6-540P-201ENST00000384622 UBE2QL1A1L167 161 aa0.48□□□□□ -2.33
RNU6-540P-201ENST00000384622 SLC28A2O43868 658 aa0.48□□□□□ -2.33
RNU6-540P-201ENST00000384622 LDLRP01130 860 aa0.48□□□□□ -2.33
RNU6-540P-201ENST00000384622 FDXRP22570 491 aa0.48□□□□□ -2.33
RNU6-540P-201ENST00000384622 DDX6P26196 483 aaKnown RBP eCLIP0.48□□□□□ -2.33
RNU6-540P-201ENST00000384622 CERS1P27544 350 aa0.48□□□□□ -2.33
RNU6-540P-201ENST00000384622 ADCY8P40145 1251 aa0.48□□□□□ -2.33
RNU6-540P-201ENST00000384622 CCNFP41002 786 aa0.48□□□□□ -2.33
RNU6-540P-201ENST00000384622 VEGFCP49767 419 aa0.48□□□□□ -2.33
RNU6-540P-201ENST00000384622 LIG3P49916 1009 aa0.48□□□□□ -2.33
RNU6-540P-201ENST00000384622 IRF9Q00978 393 aa0.48□□□□□ -2.33
RNU6-540P-201ENST00000384622 GRIN1Q05586 938 aa0.48□□□□□ -2.33
RNU6-540P-201ENST00000384622 EIF4HQ15056 248 aaKnown RBP0.48□□□□□ -2.33
RNU6-540P-201ENST00000384622 UBE3CQ15386 1083 aa0.48□□□□□ -2.33
RNU6-540P-201ENST00000384622 SUPT20HL1Q3ZLR7 823 aa0.48□□□□□ -2.33
RNU6-540P-201ENST00000384622 SEZ6Q53EL9 994 aa0.48□□□□□ -2.33
RNU6-540P-201ENST00000384622 DCAF17Q5H9S7 520 aaPredicted RBP0.48□□□□□ -2.33
RNU6-540P-201ENST00000384622 TMEM164Q5U3C3 297 aa0.48□□□□□ -2.33
RNU6-540P-201ENST00000384622 GDF7Q7Z4P5 450 aa0.48□□□□□ -2.33
RNU6-540P-201ENST00000384622 SYT12Q8IV01 421 aa0.48□□□□□ -2.33
RNU6-540P-201ENST00000384622 TRIM48Q8IWZ4 208 aa0.48□□□□□ -2.33
RNU6-540P-201ENST00000384622 CCDC144CPQ8IYA2 1237 aa0.48□□□□□ -2.33
RNU6-540P-201ENST00000384622 NRACQ8N912 160 aa0.48□□□□□ -2.33
RNU6-540P-201ENST00000384622 CTCFLQ8NI51 663 aaPredicted RBP0.48□□□□□ -2.33
RNU6-540P-201ENST00000384622 ACTRT2Q8TDY3 377 aa0.48□□□□□ -2.33
RNU6-540P-201ENST00000384622 ST8SIA2Q92186 375 aa0.48□□□□□ -2.33
RNU6-540P-201ENST00000384622 Q96MF0 132 aa0.48□□□□□ -2.33
RNU6-540P-201ENST00000384622 SLC6A18Q96N87 628 aa0.48□□□□□ -2.33
RNU6-540P-201ENST00000384622 SETDB2Q96T68 719 aa0.48□□□□□ -2.33
RNU6-540P-201ENST00000384622 TCF25Q9BQ70 676 aa0.48□□□□□ -2.33
RNU6-540P-201ENST00000384622 MCMBPQ9BTE3 642 aa0.48□□□□□ -2.33
RNU6-540P-201ENST00000384622 C1QTNF5Q9BXJ0 243 aa0.48□□□□□ -2.33
RNU6-540P-201ENST00000384622 QTRT1Q9BXR0 403 aaKnown RBP0.48□□□□□ -2.33
RNU6-540P-201ENST00000384622 MRPS18AQ9NVS2 196 aaKnown RBP0.48□□□□□ -2.33
RNU6-540P-201ENST00000384622 FBXO10Q9UK96 956 aa0.48□□□□□ -2.33
RNU6-540P-201ENST00000384622 FHOD1Q9Y613 1164 aa0.48□□□□□ -2.33
RNU6-540P-201ENST00000384622 X6R8D5 127 aa0.48□□□□□ -2.33
RNU6-540P-201ENST00000384622 ZNF839A8K0R7 811 aa0.47□□□□□ -2.33
RNU6-540P-201ENST00000384622 NDUFB5O43674 189 aa0.47□□□□□ -2.33
RNU6-540P-201ENST00000384622 UBTFP17480 764 aaKnown RBP0.47□□□□□ -2.33
RNU6-540P-201ENST00000384622 GNAT2P19087 354 aa0.47□□□□□ -2.33
RNU6-540P-201ENST00000384622 TFE3P19532 575 aaPredicted RBP0.47□□□□□ -2.33
RNU6-540P-201ENST00000384622 RGS3P49796 1198 aa0.47□□□□□ -2.33
RNU6-540P-201ENST00000384622 ATP2C1P98194 919 aaPredicted RBP0.47□□□□□ -2.33
RNU6-540P-201ENST00000384622 ACAP1Q15027 740 aa0.47□□□□□ -2.33
RNU6-540P-201ENST00000384622 SLC1A5Q15758 541 aa0.47□□□□□ -2.33
RNU6-540P-201ENST00000384622 CD276Q5ZPR3 534 aa0.47□□□□□ -2.33
RNU6-540P-201ENST00000384622 MBLAC2Q68D91 279 aa0.47□□□□□ -2.33
RNU6-540P-201ENST00000384622 CAPRIN2Q6IMN6 1127 aaKnown RBP0.47□□□□□ -2.33
RNU6-540P-201ENST00000384622 SUSD1Q6UWL2 747 aa0.47□□□□□ -2.33
RNU6-540P-201ENST00000384622 OTOP2Q7RTS6 562 aa0.47□□□□□ -2.33
RNU6-540P-201ENST00000384622 NANOGP1Q8N7R0 232 aa0.47□□□□□ -2.33
RNU6-540P-201ENST00000384622 PHOSPHO1Q8TCT1 267 aa0.47□□□□□ -2.33
RNU6-540P-201ENST00000384622 VCPIP1Q96JH7 1222 aa0.47□□□□□ -2.33
RNU6-540P-201ENST00000384622 ZPBPQ9BS86 351 aa0.47□□□□□ -2.33
RNU6-540P-201ENST00000384622 NCOA5Q9HCD5 579 aaKnown RBP0.47□□□□□ -2.33
RNU6-540P-201ENST00000384622 GMIPQ9P107 970 aa0.47□□□□□ -2.33
RNU6-540P-201ENST00000384622 ICAM5Q9UMF0 924 aa0.47□□□□□ -2.33
RNU6-540P-201ENST00000384622 TTF2Q9UNY4 1162 aaKnown RBP0.47□□□□□ -2.33
RNU6-540P-201ENST00000384622 BACE2Q9Y5Z0 518 aa0.47□□□□□ -2.33
RNU6-540P-201ENST00000384622 WNT6Q9Y6F9 365 aa0.47□□□□□ -2.33
RNU6-540P-201ENST00000384622 MUC5BQ9HC84 5762 aaPredicted RBP0.47□□□□□ -2.33
RNU6-540P-201ENST00000384622 GOLGA8BA8MQT2 603 aa0.46□□□□□ -2.34
RNU6-540P-201ENST00000384622 LACTBL1A8MY62 500 aa0.46□□□□□ -2.34
RNU6-540P-201ENST00000384622 GPR182O15218 404 aa0.46□□□□□ -2.34
RNU6-540P-201ENST00000384622 MAFKO60675 156 aa0.46□□□□□ -2.34
RNU6-540P-201ENST00000384622 ZNF432O94892 652 aa0.46□□□□□ -2.34
RNU6-540P-201ENST00000384622 SPDEFO95238 335 aa0.46□□□□□ -2.34
RNU6-540P-201ENST00000384622 HLA-DOAP06340 250 aa0.46□□□□□ -2.34
RNU6-540P-201ENST00000384622 CFHR1Q03591 330 aa0.46□□□□□ -2.34
RNU6-540P-201ENST00000384622 MAP3K12Q12852 859 aa0.46□□□□□ -2.34
RNU6-540P-201ENST00000384622 PPP2R5DQ14738 602 aa0.46□□□□□ -2.34
RNU6-540P-201ENST00000384622 TWIST1Q15672 202 aa0.46□□□□□ -2.34
RNU6-540P-201ENST00000384622 MAP3K11Q16584 847 aa0.46□□□□□ -2.34
RNU6-540P-201ENST00000384622 DPY19L1Q2PZI1 675 aa0.46□□□□□ -2.34
RNU6-540P-201ENST00000384622 TMEM119Q4V9L6 283 aa0.46□□□□□ -2.34
RNU6-540P-201ENST00000384622 EMC4Q5J8M3 183 aa0.46□□□□□ -2.34
RNU6-540P-201ENST00000384622 E4F1Q66K89 784 aaPredicted RBP0.46□□□□□ -2.34
RNU6-540P-201ENST00000384622 MRPL10Q7Z7H8 261 aaKnown RBP0.46□□□□□ -2.34
RNU6-540P-201ENST00000384622 PPFIBP1Q86W92 1011 aa0.46□□□□□ -2.34
RNU6-540P-201ENST00000384622 ZNF485Q8NCK3 441 aa0.46□□□□□ -2.34
RNU6-540P-201ENST00000384622 TTLL11Q8NHH1 800 aa0.46□□□□□ -2.34
RNU6-540P-201ENST00000384622 TMEM169Q96HH4 297 aa0.46□□□□□ -2.34
RNU6-540P-201ENST00000384622 CALR3Q96L12 384 aaKnown RBP0.46□□□□□ -2.34
RNU6-540P-201ENST00000384622 RPL10LQ96L21 214 aaKnown RBP0.46□□□□□ -2.34
RNU6-540P-201ENST00000384622 ZNF512Q96ME7 567 aaPredicted RBP0.46□□□□□ -2.34
RNU6-540P-201ENST00000384622 DCLRE1CQ96SD1 692 aaKnown RBP0.46□□□□□ -2.34
RNU6-540P-201ENST00000384622 SH2D3AQ9BRG2 576 aa0.46□□□□□ -2.34
RNU6-540P-201ENST00000384622 SMOC1Q9H4F8 434 aa0.46□□□□□ -2.34
RNU6-540P-201ENST00000384622 ANO2Q9NQ90 1003 aa0.46□□□□□ -2.34
RNU6-540P-201ENST00000384622 POLR3KQ9Y2Y1 108 aaPredicted RBP0.46□□□□□ -2.34
RNU6-540P-201ENST00000384622 KCNU1A8MYU2 1149 aa0.45□□□□□ -2.34
RNU6-540P-201ENST00000384622 PPP6CO00743 305 aa0.45□□□□□ -2.34
RNU6-540P-201ENST00000384622 VAMP4O75379 141 aa0.45□□□□□ -2.34
Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms