RNA–Protein interactions for RNA: ENST00000372733.3

SDC4-201, Transcript of syndecan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC4, Length 2,613 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC4-201ENST00000372733 FAM129AQ9BZQ8 928 aa17.78■□□□□ 0.44
SDC4-201ENST00000372733 FOCADQ5VW36 1801 aa17.77■□□□□ 0.44
SDC4-201ENST00000372733 TBCAO75347 108 aaKnown RBP17.77■□□□□ 0.44
SDC4-201ENST00000372733 RPL13P26373 211 aaKnown RBP17.77■□□□□ 0.44
SDC4-201ENST00000372733 RPA1P27694 616 aa17.77■□□□□ 0.44
SDC4-201ENST00000372733 BMT2Q1RMZ1 405 aa17.77■□□□□ 0.44
SDC4-201ENST00000372733 SHROOM1Q2M3G4 852 aaPredicted RBP17.77■□□□□ 0.44
SDC4-201ENST00000372733 PREPLQ4J6C6 727 aaPredicted RBP17.77■□□□□ 0.44
SDC4-201ENST00000372733 ERMARDQ5T6L9 678 aa17.77■□□□□ 0.44
SDC4-201ENST00000372733 DUPD1Q68J44 220 aa17.77■□□□□ 0.44
SDC4-201ENST00000372733 AADACL2Q6P093 401 aa17.77■□□□□ 0.44
SDC4-201ENST00000372733 ERMNQ8TAM6 284 aa17.77■□□□□ 0.44
SDC4-201ENST00000372733 CCT6BQ92526 530 aa17.77■□□□□ 0.44
SDC4-201ENST00000372733 SGSM3Q96HU1 749 aa17.77■□□□□ 0.44
SDC4-201ENST00000372733 MXD3Q9BW11 206 aa17.77■□□□□ 0.44
SDC4-201ENST00000372733 TAS2R14Q9NYV8 317 aa17.77■□□□□ 0.44
SDC4-201ENST00000372733 TTC7AQ9ULT0 858 aaPredicted RBP17.77■□□□□ 0.44
SDC4-201ENST00000372733 TPX2Q9ULW0 747 aaKnown RBP17.77■□□□□ 0.44
SDC4-201ENST00000372733 ZMYM2Q9UBW7 1377 aa17.77■□□□□ 0.43
SDC4-201ENST00000372733 MEIS2O14770 477 aa17.77■□□□□ 0.43
SDC4-201ENST00000372733 TGFB1I1O43294 461 aa17.77■□□□□ 0.43
SDC4-201ENST00000372733 SLC26A4O43511 780 aa17.77■□□□□ 0.43
SDC4-201ENST00000372733 ATP2B4P23634 1241 aa17.77■□□□□ 0.43
SDC4-201ENST00000372733 GTF2IP78347 998 aa17.77■□□□□ 0.43
SDC4-201ENST00000372733 PPATQ06203 517 aa17.77■□□□□ 0.43
SDC4-201ENST00000372733 DRAP1Q14919 205 aaPredicted RBP17.77■□□□□ 0.43
SDC4-201ENST00000372733 ARMC9Q7Z3E5 817 aa17.77■□□□□ 0.43
SDC4-201ENST00000372733 PALB2Q86YC2 1186 aa17.77■□□□□ 0.43
SDC4-201ENST00000372733 CTNNBL1Q8WYA6 563 aaPredicted RBP17.77■□□□□ 0.43
SDC4-201ENST00000372733 ALG3Q92685 438 aa17.77■□□□□ 0.43
SDC4-201ENST00000372733 LENG9Q96B70 501 aa17.77■□□□□ 0.43
SDC4-201ENST00000372733 SCLT1Q96NL6 688 aa17.77■□□□□ 0.43
SDC4-201ENST00000372733 ERP44Q9BS26 406 aa17.77■□□□□ 0.43
SDC4-201ENST00000372733 CNOT10Q9H9A5 744 aaKnown RBP17.77■□□□□ 0.43
SDC4-201ENST00000372733 SEPT11Q9NVA2 429 aaKnown RBP17.77■□□□□ 0.43
SDC4-201ENST00000372733 TMOD4Q9NZQ9 345 aa17.77■□□□□ 0.43
SDC4-201ENST00000372733 SNX24Q9Y343 169 aa17.77■□□□□ 0.43
SDC4-201ENST00000372733 DAAM1Q9Y4D1 1078 aa17.77■□□□□ 0.43
SDC4-201ENST00000372733 TLDC2A0PJX2 215 aa17.76■□□□□ 0.43
SDC4-201ENST00000372733 TMEM253P0C7T8 217 aa17.76■□□□□ 0.43
SDC4-201ENST00000372733 CHN1P15882 459 aa17.76■□□□□ 0.43
SDC4-201ENST00000372733 PLTPP55058 493 aa17.76■□□□□ 0.43
SDC4-201ENST00000372733 EIF3BP55884 814 aaKnown RBP17.76■□□□□ 0.43
SDC4-201ENST00000372733 PLS1Q14651 629 aa17.76■□□□□ 0.43
SDC4-201ENST00000372733 LACTB2Q53H82 288 aaPredicted RBP17.76■□□□□ 0.43
SDC4-201ENST00000372733 HOOK3Q86VS8 718 aa17.76■□□□□ 0.43
SDC4-201ENST00000372733 CEP57Q86XR8 500 aa17.76■□□□□ 0.43
SDC4-201ENST00000372733 FAM186BQ8IYM0 893 aa17.76■□□□□ 0.43
SDC4-201ENST00000372733 POLLQ9UGP5 575 aa17.76■□□□□ 0.43
SDC4-201ENST00000372733 DNAJC12Q9UKB3 198 aa17.76■□□□□ 0.43
SDC4-201ENST00000372733 FAM86B1E9PN63 330 aa17.76■□□□□ 0.43
SDC4-201ENST00000372733 MMEP08473 750 aa17.76■□□□□ 0.43
SDC4-201ENST00000372733 FAM86B2P0C5J1 330 aa17.76■□□□□ 0.43
SDC4-201ENST00000372733 CCDC172P0C7W6 258 aa17.76■□□□□ 0.43
SDC4-201ENST00000372733 LMNB1P20700 586 aa17.76■□□□□ 0.43
SDC4-201ENST00000372733 KLRC3Q07444 240 aa17.76■□□□□ 0.43
SDC4-201ENST00000372733 COG2Q14746 738 aa17.76■□□□□ 0.43
SDC4-201ENST00000372733 JAMLQ86YT9 394 aa17.76■□□□□ 0.43
SDC4-201ENST00000372733 KSR1Q8IVT5 923 aa17.76■□□□□ 0.43
SDC4-201ENST00000372733 NEK9Q8TD19 979 aa17.76■□□□□ 0.43
SDC4-201ENST00000372733 RNF25Q96BH1 459 aaPredicted RBP17.76■□□□□ 0.43
SDC4-201ENST00000372733 BORCS6Q96GS4 357 aa17.76■□□□□ 0.43
SDC4-201ENST00000372733 CCNL1Q9UK58 526 aaPredicted RBP17.76■□□□□ 0.43
SDC4-201ENST00000372733 GTPBP10A4D1E9 387 aaKnown RBP17.75■□□□□ 0.43
SDC4-201ENST00000372733 NMT1P30419 496 aaKnown RBP17.75■□□□□ 0.43
SDC4-201ENST00000372733 PMS2P54278 862 aa17.75■□□□□ 0.43
SDC4-201ENST00000372733 ZDHHC24Q6UX98 284 aa17.75■□□□□ 0.43
SDC4-201ENST00000372733 UHMK1Q8TAS1 419 aaKnown RBP17.75■□□□□ 0.43
SDC4-201ENST00000372733 FBXO25Q8TCJ0 367 aa17.75■□□□□ 0.43
SDC4-201ENST00000372733 TBC1D22AQ8WUA7 517 aa17.75■□□□□ 0.43
SDC4-201ENST00000372733 CRYGNQ8WXF5 182 aa17.75■□□□□ 0.43
SDC4-201ENST00000372733 THAP2Q9H0W7 228 aa17.75■□□□□ 0.43
SDC4-201ENST00000372733 AZI2Q9H6S1 392 aa17.75■□□□□ 0.43
SDC4-201ENST00000372733 RGL1Q9NZL6 768 aa17.75■□□□□ 0.43
SDC4-201ENST00000372733 MCM8Q9UJA3 840 aa17.75■□□□□ 0.43
SDC4-201ENST00000372733 COG5Q9UP83 839 aa17.75■□□□□ 0.43
SDC4-201ENST00000372733 GOLGA6L10A0A0M3HER8 536 aa17.75■□□□□ 0.43
SDC4-201ENST00000372733 TRIM49P0CI25 452 aa17.75■□□□□ 0.43
SDC4-201ENST00000372733 TRIM49CP0CI26 452 aa17.75■□□□□ 0.43
SDC4-201ENST00000372733 KRT13P13646 458 aa17.75■□□□□ 0.43
SDC4-201ENST00000372733 ZC2HC1CQ53FD0 456 aaPredicted RBP17.75■□□□□ 0.43
SDC4-201ENST00000372733 DENND2CQ68D51 928 aa17.75■□□□□ 0.43
SDC4-201ENST00000372733 SLC30A10Q6XR72 485 aa17.75■□□□□ 0.43
SDC4-201ENST00000372733 SYT11Q9BT88 431 aa17.75■□□□□ 0.43
SDC4-201ENST00000372733 GPR88Q9GZN0 384 aa17.75■□□□□ 0.43
SDC4-201ENST00000372733 CARD9Q9H257 536 aa17.75■□□□□ 0.43
SDC4-201ENST00000372733 CBWD6Q4V339 395 aa17.74■□□□□ 0.43
SDC4-201ENST00000372733 CBWD3Q5JTY5 395 aa17.74■□□□□ 0.43
SDC4-201ENST00000372733 CBWD5Q5RIA9 395 aa17.74■□□□□ 0.43
SDC4-201ENST00000372733 PRR5LQ6MZQ0 368 aa17.74■□□□□ 0.43
SDC4-201ENST00000372733 CCDC197Q8NCU1 140 aa17.74■□□□□ 0.43
SDC4-201ENST00000372733 ATXN2LQ8WWM7 1075 aaKnown RBP17.74■□□□□ 0.43
SDC4-201ENST00000372733 C18orf8Q96DM3 657 aa17.74■□□□□ 0.43
SDC4-201ENST00000372733 ZNF317Q96PQ6 595 aaPredicted RBP17.74■□□□□ 0.43
SDC4-201ENST00000372733 ADAM7Q9H2U9 754 aa17.74■□□□□ 0.43
SDC4-201ENST00000372733 PABPC3Q9H361 631 aaKnown RBP17.74■□□□□ 0.43
SDC4-201ENST00000372733 FAM196BA6NMK8 535 aa17.74■□□□□ 0.43
SDC4-201ENST00000372733 C6orf229H3BNL8 230 aa17.74■□□□□ 0.43
SDC4-201ENST00000372733 NUDT17P0C025 328 aa17.74■□□□□ 0.43
SDC4-201ENST00000372733 MARCKSL1P49006 195 aa17.74■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms