RNA–Protein interactions for RNA: ENST00000343916.7

COL9A3-201, Transcript of collagen type IX alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL9A3, Length 2,485 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-201ENST00000343916 SND1Q7KZF4 910 aaKnown RBP eCLIP21.12■□□□□ 0.974e-9■■■□□ 15.9
COL9A3-201ENST00000343916 KCND2Q9NZV8 630 aa21.12■□□□□ 0.97
COL9A3-201ENST00000343916 ZHX2Q9Y6X8 837 aa21.12■□□□□ 0.97
COL9A3-201ENST00000343916 ZSCAN5CA6NGD5 496 aaPredicted RBP21.11■□□□□ 0.97
COL9A3-201ENST00000343916 K7ENM7 598 aa21.11■□□□□ 0.97
COL9A3-201ENST00000343916 DDX3XO00571 662 aaKnown RBP eCLIP21.11■□□□□ 0.972e-17■■□□□ 11.5
COL9A3-201ENST00000343916 EVI5O60447 810 aa21.11■□□□□ 0.97
COL9A3-201ENST00000343916 RNF40O75150 1001 aa21.11■□□□□ 0.97
COL9A3-201ENST00000343916 FLOT1O75955 427 aa21.11■□□□□ 0.97
COL9A3-201ENST00000343916 GUCY2CP25092 1073 aa21.11■□□□□ 0.97
COL9A3-201ENST00000343916 GGCXP38435 758 aa21.11■□□□□ 0.97
COL9A3-201ENST00000343916 MAP3K10Q02779 954 aa21.11■□□□□ 0.97
COL9A3-201ENST00000343916 MED4Q9NPJ6 270 aa21.11■□□□□ 0.97
COL9A3-201ENST00000343916 RPTORQ8N122 1335 aa21.11■□□□□ 0.97
COL9A3-201ENST00000343916 EIF2AK2P19525 551 aaKnown RBP21.11■□□□□ 0.97
COL9A3-201ENST00000343916 AARSP49588 968 aaKnown RBP eCLIP21.11■□□□□ 0.97
COL9A3-201ENST00000343916 NFIL3Q16649 462 aa21.11■□□□□ 0.97
COL9A3-201ENST00000343916 TKFCQ3LXA3 575 aa21.11■□□□□ 0.97
COL9A3-201ENST00000343916 DEFB129Q9H1M3 183 aa21.11■□□□□ 0.97
COL9A3-201ENST00000343916 DMAC2Q9NW81 257 aa21.11■□□□□ 0.97
COL9A3-201ENST00000343916 EXOC3O60645 756 aa21.1■□□□□ 0.97
COL9A3-201ENST00000343916 SPP2Q13103 211 aa21.1■□□□□ 0.97
COL9A3-201ENST00000343916 TBC1D10BQ4KMP7 808 aaPredicted RBP21.1■□□□□ 0.97
COL9A3-201ENST00000343916 STXBP4Q6ZWJ1 553 aa21.1■□□□□ 0.97
COL9A3-201ENST00000343916 INPP4AQ96PE3 977 aaPredicted RBP21.1■□□□□ 0.97
COL9A3-201ENST00000343916 MKNK1Q9BUB5 465 aa21.1■□□□□ 0.97
COL9A3-201ENST00000343916 PCIF1Q9H4Z3 704 aa21.1■□□□□ 0.97
COL9A3-201ENST00000343916 DNAJC12Q9UKB3 198 aa21.1■□□□□ 0.97
COL9A3-201ENST00000343916 ESYT3A0FGR9 886 aa21.1■□□□□ 0.97
COL9A3-201ENST00000343916 F8VZ95 297 aa21.1■□□□□ 0.97
COL9A3-201ENST00000343916 AGPSO00116 658 aa21.1■□□□□ 0.97
COL9A3-201ENST00000343916 KCNK3O14649 394 aa21.1■□□□□ 0.97
COL9A3-201ENST00000343916 PPP1R37O75864 691 aa21.1■□□□□ 0.97
COL9A3-201ENST00000343916 GLI1P08151 1106 aa21.1■□□□□ 0.97
COL9A3-201ENST00000343916 DRAP1Q14919 205 aaPredicted RBP21.1■□□□□ 0.97
COL9A3-201ENST00000343916 C10orf76Q5T2E6 689 aa21.1■□□□□ 0.97
COL9A3-201ENST00000343916 U2AF1L4Q8WU68 220 aaKnown RBP21.1■□□□□ 0.97
COL9A3-201ENST00000343916 TAAR1Q96RJ0 339 aa21.1■□□□□ 0.97
COL9A3-201ENST00000343916 FAM204AQ9H8W3 233 aa21.1■□□□□ 0.97
COL9A3-201ENST00000343916 P4HBP07237 508 aaKnown RBP21.09■□□□□ 0.97
COL9A3-201ENST00000343916 BCRP11274 1271 aa21.09■□□□□ 0.97
COL9A3-201ENST00000343916 MTMR1Q13613 665 aa21.09■□□□□ 0.97
COL9A3-201ENST00000343916 TEPSINQ96N21 525 aa21.09■□□□□ 0.97
COL9A3-201ENST00000343916 STRA6Q9BX79 667 aa21.09■□□□□ 0.97
COL9A3-201ENST00000343916 AGO4Q9HCK5 861 aaKnown RBP21.09■□□□□ 0.97
COL9A3-201ENST00000343916 ASTN2O75129 1339 aaPredicted RBP21.09■□□□□ 0.97
COL9A3-201ENST00000343916 UBE4BO95155 1302 aa21.09■□□□□ 0.97
COL9A3-201ENST00000343916 BTNL10A8MVZ5 291 aa21.09■□□□□ 0.97
COL9A3-201ENST00000343916 TMCO5BA8MYB1 307 aa21.09■□□□□ 0.97
COL9A3-201ENST00000343916 WDR46O15213 610 aaKnown RBP21.09■□□□□ 0.97
COL9A3-201ENST00000343916 STAT1P42224 750 aa21.09■□□□□ 0.97
COL9A3-201ENST00000343916 DLG4P78352 724 aa21.09■□□□□ 0.97
COL9A3-201ENST00000343916 CIAPIN1Q6FI81 312 aa21.09■□□□□ 0.97
COL9A3-201ENST00000343916 GLYCTKQ8IVS8 523 aa21.09■□□□□ 0.97
COL9A3-201ENST00000343916 LNX1Q8TBB1 728 aaPredicted RBP21.09■□□□□ 0.97
COL9A3-201ENST00000343916 SYTL5Q8TDW5 730 aaPredicted RBP21.09■□□□□ 0.97
COL9A3-201ENST00000343916 KRT12Q99456 494 aa21.09■□□□□ 0.97
COL9A3-201ENST00000343916 RNF14Q9UBS8 474 aa21.09■□□□□ 0.97
COL9A3-201ENST00000343916 NENFQ9UMX5 172 aa21.09■□□□□ 0.97
COL9A3-201ENST00000343916 LRRN2O75325 713 aa21.08■□□□□ 0.97
COL9A3-201ENST00000343916 SOX5P35711 763 aa21.08■□□□□ 0.97
COL9A3-201ENST00000343916 RARRES1P49788 294 aa21.08■□□□□ 0.97
COL9A3-201ENST00000343916 RPS6P62753 249 aaKnown RBP21.08■□□□□ 0.97
COL9A3-201ENST00000343916 BFSP1Q12934 665 aa21.08■□□□□ 0.97
COL9A3-201ENST00000343916 RPS6KA1Q15418 735 aa21.08■□□□□ 0.97
COL9A3-201ENST00000343916 VPS36Q86VN1 386 aa21.08■□□□□ 0.97
COL9A3-201ENST00000343916 LRRC57Q8N9N7 239 aa21.08■□□□□ 0.97
COL9A3-201ENST00000343916 OLIG1Q8TAK6 271 aa21.08■□□□□ 0.97
COL9A3-201ENST00000343916 GPR88Q9GZN0 384 aa21.08■□□□□ 0.97
COL9A3-201ENST00000343916 MYCLP12524 364 aaPredicted RBP21.07■□□□□ 0.96
COL9A3-201ENST00000343916 MTMR2Q13614 643 aa21.07■□□□□ 0.96
COL9A3-201ENST00000343916 ZSWIM2Q8NEG5 633 aa21.07■□□□□ 0.96
COL9A3-201ENST00000343916 SLC38A10Q9HBR0 1119 aa21.07■□□□□ 0.96
COL9A3-201ENST00000343916 UBIAD1Q9Y5Z9 338 aa21.07■□□□□ 0.96
COL9A3-201ENST00000343916 TULP1O00294 542 aaPredicted RBP21.07■□□□□ 0.96
COL9A3-201ENST00000343916 FERP16591 822 aa21.07■□□□□ 0.96
COL9A3-201ENST00000343916 MYL7Q01449 175 aa21.07■□□□□ 0.96
COL9A3-201ENST00000343916 UGCGQ16739 394 aa21.07■□□□□ 0.96
COL9A3-201ENST00000343916 ARHGAP44Q17R89 818 aa21.07■□□□□ 0.96
COL9A3-201ENST00000343916 KCTD19Q17RG1 926 aaPredicted RBP21.07■□□□□ 0.96
COL9A3-201ENST00000343916 PCNX4Q63HM2 1172 aa21.07■□□□□ 0.96
COL9A3-201ENST00000343916 TPCN2Q8NHX9 752 aa21.07■□□□□ 0.96
COL9A3-201ENST00000343916 STK33Q9BYT3 514 aa21.07■□□□□ 0.96
COL9A3-201ENST00000343916 INTS2Q9H0H0 1204 aaKnown RBP21.07■□□□□ 0.96
COL9A3-201ENST00000343916 GPRC5CQ9NQ84 441 aa21.07■□□□□ 0.96
COL9A3-201ENST00000343916 PSD3Q9NYI0 1048 aa21.07■□□□□ 0.96
COL9A3-201ENST00000343916 ATP9AO75110 1047 aa21.06■□□□□ 0.96
COL9A3-201ENST00000343916 KIF4AO95239 1232 aa21.06■□□□□ 0.96
COL9A3-201ENST00000343916 H2AFZP0C0S5 128 aa21.06■□□□□ 0.96
COL9A3-201ENST00000343916 TNIP1Q15025 636 aa21.06■□□□□ 0.96
COL9A3-201ENST00000343916 H2AFVQ71UI9 128 aa21.06■□□□□ 0.96
COL9A3-201ENST00000343916 MCF2L2Q86YR7 1114 aa21.06■□□□□ 0.96
COL9A3-201ENST00000343916 NEK9Q8TD19 979 aa21.06■□□□□ 0.96
COL9A3-201ENST00000343916 LPAR1Q92633 364 aa21.06■□□□□ 0.96
COL9A3-201ENST00000343916 TAF4BQ92750 862 aa21.06■□□□□ 0.96
COL9A3-201ENST00000343916 CBWD1Q9BRT8 395 aa21.06■□□□□ 0.96
COL9A3-201ENST00000343916 LARSQ9P2J5 1176 aaKnown RBP21.06■□□□□ 0.96
COL9A3-201ENST00000343916 GOLGA6BA6NDN3 693 aa21.06■□□□□ 0.96
COL9A3-201ENST00000343916 VGLL3A8MV65 326 aa21.06■□□□□ 0.96
COL9A3-201ENST00000343916 HEXIM1O94992 359 aaKnown RBP21.06■□□□□ 0.96
Retrieved 100 of 20,778 RNA–protein pairs in 38.6 ms