RNA–Protein interactions for RNA: ENST00000339950.4

USP1-201, Transcript of ubiquitin specific peptidase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP1, Length 3,996 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP1-201ENST00000339950 SUPT20HQ8NEM7 779 aa12.92□□□□□ -0.34
USP1-201ENST00000339950 MTMR9Q96QG7 549 aa12.92□□□□□ -0.34
USP1-201ENST00000339950 TOPORSQ9NS56 1045 aaPredicted RBP12.92□□□□□ -0.34
USP1-201ENST00000339950 PSD3Q9NYI0 1048 aa12.92□□□□□ -0.34
USP1-201ENST00000339950 CHD2O14647 1828 aaKnown RBP12.91□□□□□ -0.34
USP1-201ENST00000339950 ERVK-9P63128 1117 aa12.91□□□□□ -0.34
USP1-201ENST00000339950 PADI6Q6TGC4 694 aa12.91□□□□□ -0.34
USP1-201ENST00000339950 CDR2LQ86X02 465 aaPredicted RBP12.91□□□□□ -0.34
USP1-201ENST00000339950 ARFGAP2Q8N6H7 521 aa12.91□□□□□ -0.34
USP1-201ENST00000339950 DHX38Q92620 1227 aaKnown RBP12.91□□□□□ -0.34
USP1-201ENST00000339950 CBWD1Q9BRT8 395 aa12.91□□□□□ -0.34
USP1-201ENST00000339950 LARSQ9P2J5 1176 aaKnown RBP12.91□□□□□ -0.34
USP1-201ENST00000339950 NR2E1Q9Y466 385 aa12.91□□□□□ -0.34
USP1-201ENST00000339950 CRYBG1Q9Y4K1 1723 aa12.91□□□□□ -0.34
USP1-201ENST00000339950 PI4K2BG5E9Z4 385 aa12.91□□□□□ -0.34
USP1-201ENST00000339950 IPO5O00410 1097 aaKnown RBP12.91□□□□□ -0.34
USP1-201ENST00000339950 CD19P15391 556 aa12.91□□□□□ -0.34
USP1-201ENST00000339950 GCFC2P16383 781 aaKnown RBP12.91□□□□□ -0.34
USP1-201ENST00000339950 ADCY8P40145 1251 aa12.91□□□□□ -0.34
USP1-201ENST00000339950 FXR2P51116 673 aaKnown RBP eCLIP12.91□□□□□ -0.348e-7■■■■□ 25.5
USP1-201ENST00000339950 PSMD2Q13200 908 aa12.91□□□□□ -0.34
USP1-201ENST00000339950 PDIA5Q14554 519 aa12.91□□□□□ -0.34
USP1-201ENST00000339950 MEA1Q16626 185 aa12.91□□□□□ -0.34
USP1-201ENST00000339950 LLGL2Q6P1M3 1020 aa12.91□□□□□ -0.34
USP1-201ENST00000339950 CPNE8Q86YQ8 564 aa12.91□□□□□ -0.34
USP1-201ENST00000339950 MICAL1Q8TDZ2 1067 aa12.91□□□□□ -0.34
USP1-201ENST00000339950 ATG4AQ8WYN0 398 aa12.91□□□□□ -0.34
USP1-201ENST00000339950 NUCKS1Q9H1E3 243 aaKnown RBP12.91□□□□□ -0.34
USP1-201ENST00000339950 LRRIQ4A6NIV6 560 aa12.91□□□□□ -0.34
USP1-201ENST00000339950 LSP1P33241 339 aa12.91□□□□□ -0.34
USP1-201ENST00000339950 PALB2Q86YC2 1186 aa12.91□□□□□ -0.34
USP1-201ENST00000339950 CCDC17Q96LX7 622 aa12.91□□□□□ -0.34
USP1-201ENST00000339950 AZI2Q9H6S1 392 aa12.91□□□□□ -0.34
USP1-201ENST00000339950 MTRF1LQ9UGC7 380 aaKnown RBP12.91□□□□□ -0.34
USP1-201ENST00000339950 TSKSQ9UJT2 592 aa12.91□□□□□ -0.34
USP1-201ENST00000339950 BCRP11274 1271 aa12.9□□□□□ -0.34
USP1-201ENST00000339950 NAB2Q15742 525 aa12.9□□□□□ -0.34
USP1-201ENST00000339950 SCARA5Q6ZMJ2 495 aa12.9□□□□□ -0.34
USP1-201ENST00000339950 B4GALNT4Q76KP1 1039 aa12.9□□□□□ -0.34
USP1-201ENST00000339950 CCT8L2Q96SF2 557 aa12.9□□□□□ -0.34
USP1-201ENST00000339950 TEKT3Q9BXF9 490 aa12.9□□□□□ -0.34
USP1-201ENST00000339950 TAOK3Q9H2K8 898 aa12.9□□□□□ -0.34
USP1-201ENST00000339950 RASAL2Q9UJF2 1139 aa12.9□□□□□ -0.34
USP1-201ENST00000339950 PPP1R9AQ9ULJ8 1098 aa12.9□□□□□ -0.34
USP1-201ENST00000339950 AGPSO00116 658 aa12.9□□□□□ -0.34
USP1-201ENST00000339950 ALDH1B1P30837 517 aa12.9□□□□□ -0.34
USP1-201ENST00000339950 HSD17B3P37058 310 aa12.9□□□□□ -0.34
USP1-201ENST00000339950 MARCKSL1P49006 195 aa12.9□□□□□ -0.34
USP1-201ENST00000339950 MXI1P50539 228 aa12.9□□□□□ -0.34
USP1-201ENST00000339950 MTERF2Q49AM1 385 aa12.9□□□□□ -0.34
USP1-201ENST00000339950 SEPT14Q6ZU15 432 aa12.9□□□□□ -0.34
USP1-201ENST00000339950 TBC1D1Q86TI0 1168 aaPredicted RBP12.9□□□□□ -0.34
USP1-201ENST00000339950 TAF1DQ9H5J8 278 aaPredicted RBP12.9□□□□□ -0.34
USP1-201ENST00000339950 SYNCQ9H7C4 482 aa12.9□□□□□ -0.34
USP1-201ENST00000339950 AJAP1Q9UKB5 411 aaPredicted RBP12.9□□□□□ -0.34
USP1-201ENST00000339950 MYCNP04198 464 aaPredicted RBP12.9□□□□□ -0.34
USP1-201ENST00000339950 KRT19P08727 400 aa12.9□□□□□ -0.34
USP1-201ENST00000339950 CCDC172P0C7W6 258 aa12.9□□□□□ -0.34
USP1-201ENST00000339950 DLG4P78352 724 aa12.9□□□□□ -0.34
USP1-201ENST00000339950 ARSHQ5FYA8 562 aa12.9□□□□□ -0.34
USP1-201ENST00000339950 RINT1Q6NUQ1 792 aa12.9□□□□□ -0.34
USP1-201ENST00000339950 PRUNE1Q86TP1 453 aa12.9□□□□□ -0.34
USP1-201ENST00000339950 TRIM59Q8IWR1 403 aa12.9□□□□□ -0.34
USP1-201ENST00000339950 UBL4BQ8N7F7 174 aa12.9□□□□□ -0.34
USP1-201ENST00000339950 USP38Q8NB14 1042 aa12.9□□□□□ -0.34
USP1-201ENST00000339950 RNF25Q96BH1 459 aaPredicted RBP12.9□□□□□ -0.34
USP1-201ENST00000339950 C18orf8Q96DM3 657 aa12.9□□□□□ -0.34
USP1-201ENST00000339950 ARHGEF26Q96DR7 871 aa12.9□□□□□ -0.34
USP1-201ENST00000339950 INTS2Q9H0H0 1204 aaKnown RBP12.9□□□□□ -0.34
USP1-201ENST00000339950 SWAP70Q9UH65 585 aa12.9□□□□□ -0.34
USP1-201ENST00000339950 A0A087WUV0 522 aaPredicted RBP12.89□□□□□ -0.35
USP1-201ENST00000339950 DCDC2CA8MYV0 355 aa12.89□□□□□ -0.35
USP1-201ENST00000339950 CBWD6Q4V339 395 aa12.89□□□□□ -0.35
USP1-201ENST00000339950 CBWD3Q5JTY5 395 aa12.89□□□□□ -0.35
USP1-201ENST00000339950 CBWD5Q5RIA9 395 aa12.89□□□□□ -0.35
USP1-201ENST00000339950 HIBCHQ6NVY1 386 aaPredicted RBP12.89□□□□□ -0.35
USP1-201ENST00000339950 RUFY4Q6ZNE9 571 aa12.89□□□□□ -0.35
USP1-201ENST00000339950 CACNA2D3Q8IZS8 1091 aa12.89□□□□□ -0.35
USP1-201ENST00000339950 ZSWIM2Q8NEG5 633 aa12.89□□□□□ -0.35
USP1-201ENST00000339950 GJD4Q96KN9 370 aaPredicted RBP12.89□□□□□ -0.35
USP1-201ENST00000339950 METTL14Q9HCE5 456 aaKnown RBP12.89□□□□□ -0.35
USP1-201ENST00000339950 CEP83Q9Y592 693 aa12.89□□□□□ -0.35
USP1-201ENST00000339950 LAMA4Q16363 1823 aa12.89□□□□□ -0.35
USP1-201ENST00000339950 TARSL2A2RTX5 802 aaKnown RBP12.89□□□□□ -0.35
USP1-201ENST00000339950 PIK3R2O00459 728 aa12.89□□□□□ -0.35
USP1-201ENST00000339950 EIF3HO15372 352 aaKnown RBP eCLIP12.89□□□□□ -0.35
USP1-201ENST00000339950 GJB6O95452 261 aa12.89□□□□□ -0.35
USP1-201ENST00000339950 FERP16591 822 aa12.89□□□□□ -0.35
USP1-201ENST00000339950 MARK3P27448 753 aa12.89□□□□□ -0.35
USP1-201ENST00000339950 APOBEC3HQ6NTF7 200 aaKnown RBP12.89□□□□□ -0.35
USP1-201ENST00000339950 RPAINQ86UA6 219 aa12.89□□□□□ -0.35
USP1-201ENST00000339950 CEP170P1Q96L14 293 aa12.89□□□□□ -0.35
USP1-201ENST00000339950 PWWP2AQ96N64 755 aa12.89□□□□□ -0.35
USP1-201ENST00000339950 MTUS1Q9ULD2 1270 aa12.89□□□□□ -0.35
USP1-201ENST00000339950 EAPPQ56P03 285 aaPredicted RBP12.89□□□□□ -0.35
USP1-201ENST00000339950 ZNF365Q70YC5 407 aa12.89□□□□□ -0.35
USP1-201ENST00000339950 ZBTB33Q86T24 672 aa12.89□□□□□ -0.35
USP1-201ENST00000339950 NLRP14Q86W24 1093 aa12.89□□□□□ -0.35
USP1-201ENST00000339950 EFCAB13Q8IY85 973 aa12.89□□□□□ -0.35
USP1-201ENST00000339950 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP12.89□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms