RNA–Protein interactions for RNA: ENST00000325307.11

HMGB3-201, Transcript of high mobility group box 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene HMGB3, Length 3,560 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-201ENST00000325307 NMT1P30419 496 aaKnown RBP11.07□□□□□ -0.64
HMGB3-201ENST00000325307 IRX5P78411 483 aaPredicted RBP11.07□□□□□ -0.64
HMGB3-201ENST00000325307 DAW1Q8N136 415 aa11.07□□□□□ -0.64
HMGB3-201ENST00000325307 ENOX1Q8TC92 643 aaKnown RBP11.07□□□□□ -0.64
HMGB3-201ENST00000325307 TMEM143Q96AN5 459 aa11.07□□□□□ -0.64
HMGB3-201ENST00000325307 DHTKD1Q96HY7 919 aaPredicted RBP11.07□□□□□ -0.64
HMGB3-201ENST00000325307 FANCLQ9NW38 375 aa11.07□□□□□ -0.64
HMGB3-201ENST00000325307 K7ENM7 598 aa11.06□□□□□ -0.64
HMGB3-201ENST00000325307 CLGNO14967 610 aa11.06□□□□□ -0.64
HMGB3-201ENST00000325307 SEPT4O43236 478 aa11.06□□□□□ -0.64
HMGB3-201ENST00000325307 DUSP11O75319 330 aaKnown RBP11.06□□□□□ -0.64
HMGB3-201ENST00000325307 IGHA2P01877 340 aa11.06□□□□□ -0.64
HMGB3-201ENST00000325307 MYBP10242 640 aa11.06□□□□□ -0.64
HMGB3-201ENST00000325307 PEX3P56589 373 aa11.06□□□□□ -0.64
HMGB3-201ENST00000325307 MAPK7Q13164 816 aa11.06□□□□□ -0.64
HMGB3-201ENST00000325307 FSCN1Q16658 493 aaKnown RBP11.06□□□□□ -0.64
HMGB3-201ENST00000325307 STXBP4Q6ZWJ1 553 aa11.06□□□□□ -0.64
HMGB3-201ENST00000325307 GUF1Q8N442 669 aaKnown RBP11.06□□□□□ -0.64
HMGB3-201ENST00000325307 TRAPPC12Q8WVT3 735 aa11.06□□□□□ -0.64
HMGB3-201ENST00000325307 KIFAP3Q92845 792 aa11.06□□□□□ -0.64
HMGB3-201ENST00000325307 P2RX5Q93086 422 aa11.06□□□□□ -0.64
HMGB3-201ENST00000325307 POLR3FQ9H1D9 316 aaPredicted RBP11.06□□□□□ -0.64
HMGB3-201ENST00000325307 BICDL2A1A5D9 508 aa11.06□□□□□ -0.64
HMGB3-201ENST00000325307 A6NJR5 290 aa11.06□□□□□ -0.64
HMGB3-201ENST00000325307 PLS3P13797 630 aa11.06□□□□□ -0.64
HMGB3-201ENST00000325307 CCND3P30281 292 aaPredicted RBP11.06□□□□□ -0.64
HMGB3-201ENST00000325307 RFC5P40937 340 aa11.06□□□□□ -0.64
HMGB3-201ENST00000325307 ZNF75DP51815 510 aa11.06□□□□□ -0.64
HMGB3-201ENST00000325307 CASP5P51878 434 aa11.06□□□□□ -0.64
HMGB3-201ENST00000325307 FAM193AP78312 1265 aa11.06□□□□□ -0.64
HMGB3-201ENST00000325307 DMP1Q13316 513 aaPredicted RBP11.06□□□□□ -0.64
HMGB3-201ENST00000325307 SPC24Q8NBT2 197 aa11.06□□□□□ -0.64
HMGB3-201ENST00000325307 IFT74Q96LB3 600 aa11.06□□□□□ -0.64
HMGB3-201ENST00000325307 C16orf70Q9BSU1 422 aa11.06□□□□□ -0.64
HMGB3-201ENST00000325307 OLFML3Q9NRN5 406 aa11.06□□□□□ -0.64
HMGB3-201ENST00000325307 PCDHA2Q9Y5H9 948 aa11.06□□□□□ -0.64
HMGB3-201ENST00000325307 THSD7BQ9C0I4 1608 aa11.06□□□□□ -0.64
HMGB3-201ENST00000325307 PRPF6O94906 941 aaKnown RBP11.06□□□□□ -0.64
HMGB3-201ENST00000325307 PGK1P00558 417 aa11.06□□□□□ -0.64
HMGB3-201ENST00000325307 ZNF131P52739 623 aa11.06□□□□□ -0.64
HMGB3-201ENST00000325307 SMTNP53814 917 aa11.06□□□□□ -0.64
HMGB3-201ENST00000325307 NCAPHQ15003 741 aa11.06□□□□□ -0.64
HMGB3-201ENST00000325307 GNASQ5JWF2 1037 aa11.06□□□□□ -0.64
HMGB3-201ENST00000325307 SPATA1Q5VX52 437 aa11.06□□□□□ -0.64
HMGB3-201ENST00000325307 METTL13Q8N6R0 699 aa11.06□□□□□ -0.64
HMGB3-201ENST00000325307 TSG101Q99816 390 aa11.06□□□□□ -0.64
HMGB3-201ENST00000325307 Q9Y3F1 56 aa11.06□□□□□ -0.64
HMGB3-201ENST00000325307 CEP350Q5VT06 3117 aa11.05□□□□□ -0.64
HMGB3-201ENST00000325307 LOXHD1Q8IVV2 1947 aa11.05□□□□□ -0.64
HMGB3-201ENST00000325307 PTMAP06454 111 aaKnown RBP11.05□□□□□ -0.64
HMGB3-201ENST00000325307 INSRRP14616 1297 aa11.05□□□□□ -0.64
HMGB3-201ENST00000325307 CCNE1P24864 410 aa11.05□□□□□ -0.64
HMGB3-201ENST00000325307 SARM1Q6SZW1 724 aa11.05□□□□□ -0.64
HMGB3-201ENST00000325307 C17orf53Q8N3J3 647 aaPredicted RBP11.05□□□□□ -0.64
HMGB3-201ENST00000325307 XPNPEP1Q9NQW7 623 aa11.05□□□□□ -0.64
HMGB3-201ENST00000325307 SLC16A4O15374 487 aa11.05□□□□□ -0.64
HMGB3-201ENST00000325307 PMS1P54277 932 aaKnown RBP11.05□□□□□ -0.64
HMGB3-201ENST00000325307 ZC2HC1CQ53FD0 456 aaPredicted RBP11.05□□□□□ -0.64
HMGB3-201ENST00000325307 SCFD1Q8WVM8 642 aa11.05□□□□□ -0.64
HMGB3-201ENST00000325307 EEF2KMTQ96G04 330 aa11.05□□□□□ -0.64
HMGB3-201ENST00000325307 MED15Q96RN5 788 aa11.05□□□□□ -0.64
HMGB3-201ENST00000325307 CCDC94Q9BW85 323 aaPredicted RBP11.05□□□□□ -0.64
HMGB3-201ENST00000325307 TRIM5Q9C035 493 aa11.05□□□□□ -0.64
HMGB3-201ENST00000325307 HSD3B7Q9H2F3 369 aa11.05□□□□□ -0.64
HMGB3-201ENST00000325307 DHX33Q9H6R0 707 aaKnown RBP11.05□□□□□ -0.64
HMGB3-201ENST00000325307 WBP1LQ9NX94 342 aa11.05□□□□□ -0.64
HMGB3-201ENST00000325307 GRK4P32298 578 aa11.05□□□□□ -0.64
HMGB3-201ENST00000325307 PRMT2P55345 433 aa11.05□□□□□ -0.64
HMGB3-201ENST00000325307 PPFIA1Q13136 1202 aa11.05□□□□□ -0.64
HMGB3-201ENST00000325307 TARBP2Q15633 366 aaKnown RBP11.05□□□□□ -0.64
HMGB3-201ENST00000325307 KIAA0753Q2KHM9 967 aa11.05□□□□□ -0.64
HMGB3-201ENST00000325307 KSR1Q8IVT5 923 aa11.05□□□□□ -0.64
HMGB3-201ENST00000325307 LRRC71Q8N4P6 559 aa11.05□□□□□ -0.64
HMGB3-201ENST00000325307 CSGALNACT2Q8N6G5 542 aa11.05□□□□□ -0.64
HMGB3-201ENST00000325307 SLAIN1Q8ND83 568 aa11.05□□□□□ -0.64
HMGB3-201ENST00000325307 PXYLP1Q8TE99 480 aa11.05□□□□□ -0.64
HMGB3-201ENST00000325307 XPNPEP3Q9NQH7 507 aa11.05□□□□□ -0.64
HMGB3-201ENST00000325307 KMT5AQ9NQR1 393 aa11.05□□□□□ -0.64
HMGB3-201ENST00000325307 SAMSN1Q9NSI8 373 aaKnown RBP11.05□□□□□ -0.64
HMGB3-201ENST00000325307 PCDHB13Q9Y5F0 798 aa11.05□□□□□ -0.64
HMGB3-201ENST00000325307 PTCH2Q9Y6C5 1203 aa11.05□□□□□ -0.64
HMGB3-201ENST00000325307 WDR81Q562E7 1941 aa11.04□□□□□ -0.64
HMGB3-201ENST00000325307 INHAP05111 366 aa11.04□□□□□ -0.64
HMGB3-201ENST00000325307 COBLL1Q53SF7 1204 aa11.04□□□□□ -0.64
HMGB3-201ENST00000325307 ANKRD40Q6AI12 368 aa11.04□□□□□ -0.64
HMGB3-201ENST00000325307 ZNF720Q7Z2F6 126 aa11.04□□□□□ -0.64
HMGB3-201ENST00000325307 EXOC8Q8IYI6 725 aa11.04□□□□□ -0.64
HMGB3-201ENST00000325307 SYCP3Q8IZU3 236 aa11.04□□□□□ -0.64
HMGB3-201ENST00000325307 PPP1R13LQ8WUF5 828 aa11.04□□□□□ -0.64
HMGB3-201ENST00000325307 JPH2Q9BR39 696 aaPredicted RBP11.04□□□□□ -0.64
HMGB3-201ENST00000325307 KIFC3Q9BVG8 833 aa11.04□□□□□ -0.64
HMGB3-201ENST00000325307 SEMA6BQ9H3T3 888 aa11.04□□□□□ -0.64
HMGB3-201ENST00000325307 PYCARDQ9ULZ3 195 aa11.04□□□□□ -0.64
HMGB3-201ENST00000325307 MAFO75444 373 aaPredicted RBP11.04□□□□□ -0.64
HMGB3-201ENST00000325307 SERPINC1P01008 464 aa11.04□□□□□ -0.64
HMGB3-201ENST00000325307 HOXD8P13378 290 aaPredicted RBP11.04□□□□□ -0.64
HMGB3-201ENST00000325307 ATP1A3P13637 1013 aa11.04□□□□□ -0.64
HMGB3-201ENST00000325307 ZNF484Q5JVG2 852 aa11.04□□□□□ -0.64
HMGB3-201ENST00000325307 ZBTB10Q96DT7 871 aa11.04□□□□□ -0.64
HMGB3-201ENST00000325307 SRRTQ9BXP5 876 aaKnown RBP11.04□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms