RNA–Protein interactions for RNA: ENST00000319172.9

TMEM39A-201, Transcript of transmembrane protein 39A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TMEM39A, Length 4,369 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM39A-201ENST00000319172 CAPN11Q9UMQ6 739 aa10.08□□□□□ -0.8
TMEM39A-201ENST00000319172 ITGB4P16144 1822 aa10.08□□□□□ -0.8
TMEM39A-201ENST00000319172 ASB14A6NK59 587 aa10.07□□□□□ -0.8
TMEM39A-201ENST00000319172 IRF6O14896 467 aa10.07□□□□□ -0.8
TMEM39A-201ENST00000319172 MYL3P08590 195 aa10.07□□□□□ -0.8
TMEM39A-201ENST00000319172 TCP1P17987 556 aaKnown RBP10.07□□□□□ -0.8
TMEM39A-201ENST00000319172 SLC9A1P19634 815 aa10.07□□□□□ -0.8
TMEM39A-201ENST00000319172 PGM5Q15124 567 aa10.07□□□□□ -0.8
TMEM39A-201ENST00000319172 DNAJC21Q5F1R6 531 aaKnown RBP10.07□□□□□ -0.8
TMEM39A-201ENST00000319172 RAD9BQ6WBX8 426 aa10.07□□□□□ -0.8
TMEM39A-201ENST00000319172 LRRC71Q8N4P6 559 aa10.07□□□□□ -0.8
TMEM39A-201ENST00000319172 GPRC5AQ8NFJ5 357 aa10.07□□□□□ -0.8
TMEM39A-201ENST00000319172 SLC38A10Q9HBR0 1119 aa10.07□□□□□ -0.8
TMEM39A-201ENST00000319172 AGTPBP1Q9UPW5 1226 aa10.07□□□□□ -0.8
TMEM39A-201ENST00000319172 PPP2R3BQ9Y5P8 575 aa10.07□□□□□ -0.8
TMEM39A-201ENST00000319172 TCHHQ07283 1943 aa10.07□□□□□ -0.8
TMEM39A-201ENST00000319172 TBC1D12O60347 775 aa10.07□□□□□ -0.8
TMEM39A-201ENST00000319172 ZMYND10O75800 440 aa10.07□□□□□ -0.8
TMEM39A-201ENST00000319172 PLS3P13797 630 aa10.07□□□□□ -0.8
TMEM39A-201ENST00000319172 ACOT2P49753 483 aa10.07□□□□□ -0.8
TMEM39A-201ENST00000319172 HERVK_113P62684 666 aa10.07□□□□□ -0.8
TMEM39A-201ENST00000319172 PPARDQ03181 441 aa10.07□□□□□ -0.8
TMEM39A-201ENST00000319172 DRAP1Q14919 205 aaPredicted RBP10.07□□□□□ -0.8
TMEM39A-201ENST00000319172 SLC35G1Q2M3R5 365 aa10.07□□□□□ -0.8
TMEM39A-201ENST00000319172 ZNF568Q3ZCX4 644 aa10.07□□□□□ -0.8
TMEM39A-201ENST00000319172 SLFN12LQ6IEE8 588 aa10.07□□□□□ -0.8
TMEM39A-201ENST00000319172 ZNF746Q6NUN9 644 aaPredicted RBP10.07□□□□□ -0.8
TMEM39A-201ENST00000319172 GLIS3Q8NEA6 775 aa10.07□□□□□ -0.8
TMEM39A-201ENST00000319172 ZNF653Q96CK0 615 aa10.07□□□□□ -0.8
TMEM39A-201ENST00000319172 CDCA5Q96FF9 252 aa10.07□□□□□ -0.8
TMEM39A-201ENST00000319172 SYT17Q9BSW7 474 aa10.07□□□□□ -0.8
TMEM39A-201ENST00000319172 SPATC1LQ9H0A9 340 aa10.07□□□□□ -0.8
TMEM39A-201ENST00000319172 TSKSQ9UJT2 592 aa10.07□□□□□ -0.8
TMEM39A-201ENST00000319172 PFASO15067 1338 aa10.07□□□□□ -0.8
TMEM39A-201ENST00000319172 FAM237AA0A1B0GTK4 181 aa10.07□□□□□ -0.8
TMEM39A-201ENST00000319172 TLDC2A0PJX2 215 aa10.07□□□□□ -0.8
TMEM39A-201ENST00000319172 THAP12O43422 761 aa10.07□□□□□ -0.8
TMEM39A-201ENST00000319172 SLC25A27O95847 323 aa10.07□□□□□ -0.8
TMEM39A-201ENST00000319172 P4HA1P13674 534 aa10.07□□□□□ -0.8
TMEM39A-201ENST00000319172 CYP2B6P20813 491 aa10.07□□□□□ -0.8
TMEM39A-201ENST00000319172 LONRF2Q1L5Z9 754 aa10.07□□□□□ -0.8
TMEM39A-201ENST00000319172 OTOP1Q7RTM1 612 aa10.07□□□□□ -0.8
TMEM39A-201ENST00000319172 CATSPER4Q7RTX7 472 aa10.07□□□□□ -0.8
TMEM39A-201ENST00000319172 SH3RF1Q7Z6J0 888 aa10.07□□□□□ -0.8
TMEM39A-201ENST00000319172 FRMD5Q7Z6J6 570 aa10.07□□□□□ -0.8
TMEM39A-201ENST00000319172 CCDC26Q8TAB7 109 aa10.07□□□□□ -0.8
TMEM39A-201ENST00000319172 TRAF3IP1Q8TDR0 691 aaPredicted RBP10.07□□□□□ -0.8
TMEM39A-201ENST00000319172 TCP11Q8WWU5 503 aa10.07□□□□□ -0.8
TMEM39A-201ENST00000319172 GPRASP2Q96D09 838 aa10.07□□□□□ -0.8
TMEM39A-201ENST00000319172 ANKRD36BP1Q96IX9 119 aa10.07□□□□□ -0.8
TMEM39A-201ENST00000319172 PHLPP2Q6ZVD8 1323 aa10.07□□□□□ -0.8
TMEM39A-201ENST00000319172 TNPO2O14787 897 aaKnown RBP10.07□□□□□ -0.8
TMEM39A-201ENST00000319172 MAFGO15525 162 aa10.07□□□□□ -0.8
TMEM39A-201ENST00000319172 DYNC1LI2O43237 492 aaPredicted RBP10.07□□□□□ -0.8
TMEM39A-201ENST00000319172 SRGAP2O75044 1071 aa10.07□□□□□ -0.8
TMEM39A-201ENST00000319172 LMAN1P49257 510 aa10.07□□□□□ -0.8
TMEM39A-201ENST00000319172 SOX10P56693 466 aa10.07□□□□□ -0.8
TMEM39A-201ENST00000319172 MRPS25P82663 173 aaKnown RBP10.07□□□□□ -0.8
TMEM39A-201ENST00000319172 IL31RAQ8NI17 732 aa10.07□□□□□ -0.8
TMEM39A-201ENST00000319172 WDR24Q96S15 920 aa10.07□□□□□ -0.8
TMEM39A-201ENST00000319172 A1CFQ9NQ94 594 aaKnown RBP10.07□□□□□ -0.8
TMEM39A-201ENST00000319172 HSPBP1Q9NZL4 362 aa10.07□□□□□ -0.8
TMEM39A-201ENST00000319172 EFCAB8A8MWE9 144 aa10.06□□□□□ -0.8
TMEM39A-201ENST00000319172 CYP2C8P10632 490 aa10.06□□□□□ -0.8
TMEM39A-201ENST00000319172 CETPP11597 493 aa10.06□□□□□ -0.8
TMEM39A-201ENST00000319172 COPB2P35606 906 aa10.06□□□□□ -0.8
TMEM39A-201ENST00000319172 CASP4P49662 377 aa10.06□□□□□ -0.8
TMEM39A-201ENST00000319172 EDRF1Q3B7T1 1238 aa10.06□□□□□ -0.8
TMEM39A-201ENST00000319172 NT5DC1Q5TFE4 455 aa10.06□□□□□ -0.8
TMEM39A-201ENST00000319172 PCNX4Q63HM2 1172 aa10.06□□□□□ -0.8
TMEM39A-201ENST00000319172 SMAP1Q8IYB5 467 aaPredicted RBP10.06□□□□□ -0.8
TMEM39A-201ENST00000319172 EXOC8Q8IYI6 725 aa10.06□□□□□ -0.8
TMEM39A-201ENST00000319172 SCFD1Q8WVM8 642 aa10.06□□□□□ -0.8
TMEM39A-201ENST00000319172 DYDC1Q8WWB3 177 aa10.06□□□□□ -0.8
TMEM39A-201ENST00000319172 NAP1L3Q99457 506 aaPredicted RBP10.06□□□□□ -0.8
TMEM39A-201ENST00000319172 INTS2Q9H0H0 1204 aaKnown RBP10.06□□□□□ -0.8
TMEM39A-201ENST00000319172 IGKV6D-41A0A0C4DH26 115 aa10.06□□□□□ -0.8
TMEM39A-201ENST00000319172 KRIT1O00522 736 aa10.06□□□□□ -0.8
TMEM39A-201ENST00000319172 SLITRK3O94933 977 aa10.06□□□□□ -0.8
TMEM39A-201ENST00000319172 SLC8A3P57103 927 aa10.06□□□□□ -0.8
TMEM39A-201ENST00000319172 RRP1BQ14684 758 aaKnown RBP10.06□□□□□ -0.8
TMEM39A-201ENST00000319172 EMC2Q15006 297 aa10.06□□□□□ -0.8
TMEM39A-201ENST00000319172 SRGAP1Q7Z6B7 1085 aa10.06□□□□□ -0.8
TMEM39A-201ENST00000319172 ZNF354CQ86Y25 554 aa10.06□□□□□ -0.8
TMEM39A-201ENST00000319172 FBXO16Q8IX29 292 aaPredicted RBP10.06□□□□□ -0.8
TMEM39A-201ENST00000319172 CLMNQ96JQ2 1002 aa10.06□□□□□ -0.8
TMEM39A-201ENST00000319172 RPF1Q9H9Y2 349 aaKnown RBP10.06□□□□□ -0.8
TMEM39A-201ENST00000319172 AGO4Q9HCK5 861 aaKnown RBP10.06□□□□□ -0.8
TMEM39A-201ENST00000319172 AGO2Q9UKV8 859 aaKnown RBP10.06□□□□□ -0.8
TMEM39A-201ENST00000319172 TFR2Q9UP52 801 aa10.06□□□□□ -0.8
TMEM39A-201ENST00000319172 JAG1P78504 1218 aa10.06□□□□□ -0.8
TMEM39A-201ENST00000319172 CALCOCO2Q13137 446 aa10.06□□□□□ -0.8
TMEM39A-201ENST00000319172 XRRA1Q6P2D8 792 aa10.06□□□□□ -0.8
TMEM39A-201ENST00000319172 CDR2LQ86X02 465 aaPredicted RBP10.06□□□□□ -0.8
TMEM39A-201ENST00000319172 C4orf32Q8N8J7 132 aa10.06□□□□□ -0.8
TMEM39A-201ENST00000319172 TSPYL1Q9H0U9 437 aa10.06□□□□□ -0.8
TMEM39A-201ENST00000319172 GBA2Q9HCG7 927 aaPredicted RBP10.06□□□□□ -0.8
TMEM39A-201ENST00000319172 PEX10O60683 326 aa10.05□□□□□ -0.8
TMEM39A-201ENST00000319172 TUBBP07437 444 aa10.05□□□□□ -0.8
TMEM39A-201ENST00000319172 ZNF18P17022 549 aa10.05□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms