RNA–Protein interactions for RNA: ENST00000308508.5

CSPG4-201, Transcript of chondroitin sulfate proteoglycan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CSPG4, Length 8,290 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4-201ENST00000308508 ABCA10Q8WWZ4 1543 aa14.78□□□□□ -0.04
CSPG4-201ENST00000308508 MAFGO15525 162 aa14.77□□□□□ -0.04
CSPG4-201ENST00000308508 ASAP2O43150 1006 aa14.77□□□□□ -0.04
CSPG4-201ENST00000308508 TCIRG1Q13488 830 aa14.77□□□□□ -0.04
CSPG4-201ENST00000308508 UBE3CQ15386 1083 aa14.77□□□□□ -0.04
CSPG4-201ENST00000308508 TBC1D9BQ66K14 1250 aa14.77□□□□□ -0.04
CSPG4-201ENST00000308508 C7orf31Q8N865 590 aa14.77□□□□□ -0.04
CSPG4-201ENST00000308508 ALKBH8Q96BT7 664 aaKnown RBP14.77□□□□□ -0.04
CSPG4-201ENST00000308508 HEXIM2Q96MH2 286 aaKnown RBP14.77□□□□□ -0.04
CSPG4-201ENST00000308508 WWP1Q9H0M0 922 aa14.77□□□□□ -0.04
CSPG4-201ENST00000308508 DDX5P17844 614 aaKnown RBP14.77□□□□□ -0.04
CSPG4-201ENST00000308508 CHRNA3P32297 505 aa14.77□□□□□ -0.04
CSPG4-201ENST00000308508 IL13P35225 146 aa14.77□□□□□ -0.04
CSPG4-201ENST00000308508 GCC2Q8IWJ2 1684 aa14.77□□□□□ -0.04
CSPG4-201ENST00000308508 ABI1Q8IZP0 508 aa14.77□□□□□ -0.04
CSPG4-201ENST00000308508 APOL6Q9BWW8 343 aa14.77□□□□□ -0.04
CSPG4-201ENST00000308508 TRIM8Q9BZR9 551 aa14.77□□□□□ -0.04
CSPG4-201ENST00000308508 VPS11Q9H270 941 aa14.77□□□□□ -0.04
CSPG4-201ENST00000308508 PCIF1Q9H4Z3 704 aa14.77□□□□□ -0.04
CSPG4-201ENST00000308508 SESN1Q9Y6P5 492 aa14.77□□□□□ -0.04
CSPG4-201ENST00000308508 INO80B-WBP1J3KQ70 363 aa14.77□□□□□ -0.04
CSPG4-201ENST00000308508 KCNA3P22001 575 aa14.77□□□□□ -0.04
CSPG4-201ENST00000308508 DCAF15Q66K64 600 aa14.77□□□□□ -0.04
CSPG4-201ENST00000308508 SNF8Q96H20 258 aa14.77□□□□□ -0.04
CSPG4-201ENST00000308508 CARD14Q9BXL6 1004 aa14.77□□□□□ -0.04
CSPG4-201ENST00000308508 INO80BQ9C086 356 aaPredicted RBP14.77□□□□□ -0.04
CSPG4-201ENST00000308508 KLHL8Q9P2G9 620 aaPredicted RBP14.77□□□□□ -0.04
CSPG4-201ENST00000308508 SEL1LQ9UBV2 794 aa14.77□□□□□ -0.04
CSPG4-201ENST00000308508 HSPA1AP0DMV8 641 aaKnown RBP14.77□□□□□ -0.05
CSPG4-201ENST00000308508 HSPA1BP0DMV9 641 aaKnown RBP14.77□□□□□ -0.05
CSPG4-201ENST00000308508 PLCG1P19174 1290 aa14.77□□□□□ -0.05
CSPG4-201ENST00000308508 FBXW4P57775 412 aa14.77□□□□□ -0.05
CSPG4-201ENST00000308508 NIM1KQ8IY84 436 aa14.77□□□□□ -0.05
CSPG4-201ENST00000308508 ULK4Q96C45 1275 aa14.77□□□□□ -0.05
CSPG4-201ENST00000308508 MPP6Q9NZW5 540 aa14.77□□□□□ -0.05
CSPG4-201ENST00000308508 ZNF263O14978 683 aa14.77□□□□□ -0.05
CSPG4-201ENST00000308508 MEFVO15553 781 aaPredicted RBP14.77□□□□□ -0.05
CSPG4-201ENST00000308508 RAB14P61106 215 aa14.77□□□□□ -0.05
CSPG4-201ENST00000308508 B4GALNT2Q8NHY0 566 aa14.77□□□□□ -0.05
CSPG4-201ENST00000308508 NXF1Q9UBU9 619 aaKnown RBP14.77□□□□□ -0.05
CSPG4-201ENST00000308508 GGPS1O95749 300 aa14.77□□□□□ -0.05
CSPG4-201ENST00000308508 ANXA13P27216 316 aa14.77□□□□□ -0.05
CSPG4-201ENST00000308508 HORMAD1Q86X24 394 aa14.77□□□□□ -0.05
CSPG4-201ENST00000308508 CAB39Q9Y376 341 aaPredicted RBP14.77□□□□□ -0.05
CSPG4-201ENST00000308508 GOLGA8MH3BSY2 632 aa14.77□□□□□ -0.05
CSPG4-201ENST00000308508 HADHAP40939 763 aa14.77□□□□□ -0.05
CSPG4-201ENST00000308508 SLFN13Q68D06 897 aa14.77□□□□□ -0.05
CSPG4-201ENST00000308508 APLFQ8IW19 511 aaPredicted RBP14.77□□□□□ -0.05
CSPG4-201ENST00000308508 PROM2Q8N271 834 aa14.77□□□□□ -0.05
CSPG4-201ENST00000308508 BUD13Q9BRD0 619 aaKnown RBP eCLIP14.77□□□□□ -0.05
CSPG4-201ENST00000308508 BRIP1Q9BX63 1249 aa14.77□□□□□ -0.05
CSPG4-201ENST00000308508 RUBCNLQ9H714 662 aa14.77□□□□□ -0.05
CSPG4-201ENST00000308508 KDM5DQ9BY66 1539 aa14.77□□□□□ -0.05
CSPG4-201ENST00000308508 LZTS3O60299 673 aaPredicted RBP14.76□□□□□ -0.05
CSPG4-201ENST00000308508 KIF23Q02241 960 aaPredicted RBP14.76□□□□□ -0.05
CSPG4-201ENST00000308508 ARL6IP4Q66PJ3 421 aaKnown RBP14.76□□□□□ -0.05
CSPG4-201ENST00000308508 OLFML2BQ68BL8 750 aa14.76□□□□□ -0.05
CSPG4-201ENST00000308508 SRLQ86TD4 932 aa14.76□□□□□ -0.05
CSPG4-201ENST00000308508 ARL2BPQ9Y2Y0 163 aa14.76□□□□□ -0.05
CSPG4-201ENST00000308508 FOXP2O15409 715 aa14.76□□□□□ -0.05
CSPG4-201ENST00000308508 TTLL1O95922 423 aa14.76□□□□□ -0.05
CSPG4-201ENST00000308508 CDHR1Q96JP9 859 aa14.76□□□□□ -0.05
CSPG4-201ENST00000308508 C8orf37Q96NL8 207 aa14.76□□□□□ -0.05
CSPG4-201ENST00000308508 PAGR1Q9BTK6 254 aa14.76□□□□□ -0.05
CSPG4-201ENST00000308508 ZFYVE19Q96K21 471 aa14.76□□□□□ -0.05
CSPG4-201ENST00000308508 SRGAP2O75044 1071 aa14.76□□□□□ -0.05
CSPG4-201ENST00000308508 CALB1P05937 261 aa14.76□□□□□ -0.05
CSPG4-201ENST00000308508 GPC5P78333 572 aa14.76□□□□□ -0.05
CSPG4-201ENST00000308508 ATP11CQ8NB49 1132 aa14.76□□□□□ -0.05
CSPG4-201ENST00000308508 CCNL1Q9UK58 526 aaPredicted RBP14.76□□□□□ -0.05
CSPG4-201ENST00000308508 AURKCQ9UQB9 309 aa14.76□□□□□ -0.05
CSPG4-201ENST00000308508 KRT87PA6NCN2 255 aa14.76□□□□□ -0.05
CSPG4-201ENST00000308508 ADCY3O60266 1144 aa14.76□□□□□ -0.05
CSPG4-201ENST00000308508 DNAL1Q4LDG9 190 aa14.76□□□□□ -0.05
CSPG4-201ENST00000308508 PPP4R4Q6NUP7 873 aa14.76□□□□□ -0.05
CSPG4-201ENST00000308508 TBCKQ8TEA7 893 aa14.76□□□□□ -0.05
CSPG4-201ENST00000308508 ORC4O43929 436 aa14.76□□□□□ -0.05
CSPG4-201ENST00000308508 ELF1P32519 619 aa14.76□□□□□ -0.05
CSPG4-201ENST00000308508 KRT72Q14CN4 511 aa14.76□□□□□ -0.05
CSPG4-201ENST00000308508 GOLPH3LQ9H4A5 285 aa14.76□□□□□ -0.05
CSPG4-201ENST00000308508 MLXIPLQ9NP71 852 aa14.76□□□□□ -0.05
CSPG4-201ENST00000308508 SETD1BQ9UPS6 1966 aaKnown RBP14.76□□□□□ -0.05
CSPG4-201ENST00000308508 EIF4E1BA6NMX2 242 aaKnown RBP14.75□□□□□ -0.05
CSPG4-201ENST00000308508 PLA2G4BP0C869 781 aa14.75□□□□□ -0.05
CSPG4-201ENST00000308508 RABGAP1LQ5R372 815 aa14.75□□□□□ -0.05
CSPG4-201ENST00000308508 RRM2BQ7LG56 351 aa14.75□□□□□ -0.05
CSPG4-201ENST00000308508 TEX2Q8IWB9 1127 aa14.75□□□□□ -0.05
CSPG4-201ENST00000308508 MRPS26Q9BYN8 205 aaKnown RBP14.75□□□□□ -0.05
CSPG4-201ENST00000308508 ZNF408Q9H9D4 720 aa14.75□□□□□ -0.05
CSPG4-201ENST00000308508 FAM187AA6NFU0 413 aa14.75□□□□□ -0.05
CSPG4-201ENST00000308508 MYO1DO94832 1006 aa14.75□□□□□ -0.05
CSPG4-201ENST00000308508 KRT16P08779 473 aa14.75□□□□□ -0.05
CSPG4-201ENST00000308508 RUNX1T1Q06455 604 aa14.75□□□□□ -0.05
CSPG4-201ENST00000308508 CUL4AQ13619 759 aa14.75□□□□□ -0.05
CSPG4-201ENST00000308508 TFDP2Q14188 446 aa14.75□□□□□ -0.05
CSPG4-201ENST00000308508 CDO1Q16878 200 aa14.75□□□□□ -0.05
CSPG4-201ENST00000308508 TUBGCP3Q96CW5 907 aa14.75□□□□□ -0.05
CSPG4-201ENST00000308508 EDEM3Q9BZQ6 932 aa14.75□□□□□ -0.05
CSPG4-201ENST00000308508 CCDC87Q9NVE4 849 aa14.75□□□□□ -0.05
CSPG4-201ENST00000308508 CD58P19256 250 aa14.75□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms