RNA–Protein interactions for RNA: ENST00000297405.9

CSMD3-201, Transcript of CUB and Sushi multiple domains 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CSMD3, Length 13,212 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-201ENST00000297405 NCF4Q15080 339 aa5.15□□□□□ -1.58
CSMD3-201ENST00000297405 FOXD1Q16676 465 aa5.15□□□□□ -1.58
CSMD3-201ENST00000297405 TAF1BQ53T94 588 aaPredicted RBP5.15□□□□□ -1.58
CSMD3-201ENST00000297405 CC2D1AQ6P1N0 951 aaPredicted RBP5.15□□□□□ -1.58
CSMD3-201ENST00000297405 SNAP23O00161 211 aa5.15□□□□□ -1.58
CSMD3-201ENST00000297405 BAIAP3O94812 1187 aa5.15□□□□□ -1.58
CSMD3-201ENST00000297405 AGTP01019 485 aa5.15□□□□□ -1.58
CSMD3-201ENST00000297405 ARID5AQ03989 594 aa5.15□□□□□ -1.58
CSMD3-201ENST00000297405 RGS21Q2M5E4 152 aa5.15□□□□□ -1.58
CSMD3-201ENST00000297405 KRT40Q6A162 431 aa5.15□□□□□ -1.58
CSMD3-201ENST00000297405 EFL1Q7Z2Z2 1120 aaKnown RBP5.15□□□□□ -1.58
CSMD3-201ENST00000297405 CCDC33Q8N5R6 958 aa5.15□□□□□ -1.58
CSMD3-201ENST00000297405 MAGEC3Q8TD91 643 aa5.15□□□□□ -1.58
CSMD3-201ENST00000297405 SCFD1Q8WVM8 642 aa5.15□□□□□ -1.58
CSMD3-201ENST00000297405 EME1Q96AY2 570 aa5.15□□□□□ -1.58
CSMD3-201ENST00000297405 BTBD6Q96KE9 485 aa5.15□□□□□ -1.58
CSMD3-201ENST00000297405 PARD6BQ9BYG5 372 aa5.15□□□□□ -1.58
CSMD3-201ENST00000297405 AKAP7Q9P0M2 348 aaPredicted RBP5.15□□□□□ -1.58
CSMD3-201ENST00000297405 CORO1CQ9ULV4 474 aaPredicted RBP5.15□□□□□ -1.58
CSMD3-201ENST00000297405 PLCE1Q9P212 2302 aa5.15□□□□□ -1.58
CSMD3-201ENST00000297405 ARPC4-TTLL3A0A0A6YYG9 625 aa5.15□□□□□ -1.58
CSMD3-201ENST00000297405 ARHGEF37A1IGU5 675 aa5.15□□□□□ -1.58
CSMD3-201ENST00000297405 HEXIM1O94992 359 aaKnown RBP5.15□□□□□ -1.58
CSMD3-201ENST00000297405 ASS1P00966 412 aaKnown RBP5.15□□□□□ -1.58
CSMD3-201ENST00000297405 TJAP1Q5JTD0 557 aa5.15□□□□□ -1.58
CSMD3-201ENST00000297405 TBC1D9BQ66K14 1250 aa5.15□□□□□ -1.58
CSMD3-201ENST00000297405 HACE1Q8IYU2 909 aa5.15□□□□□ -1.58
CSMD3-201ENST00000297405 ANKRD7Q92527 254 aa5.15□□□□□ -1.58
CSMD3-201ENST00000297405 ACAD9Q9H845 621 aa5.15□□□□□ -1.58
CSMD3-201ENST00000297405 AP3M1Q9Y2T2 418 aa5.15□□□□□ -1.58
CSMD3-201ENST00000297405 STON1Q9Y6Q2 735 aa5.15□□□□□ -1.58
CSMD3-201ENST00000297405 FREM3P0C091 2139 aa5.15□□□□□ -1.58
CSMD3-201ENST00000297405 MATN2O00339 956 aa5.15□□□□□ -1.58
CSMD3-201ENST00000297405 SKAP2O75563 359 aaPredicted RBP5.15□□□□□ -1.58
CSMD3-201ENST00000297405 NPR1P16066 1061 aa5.15□□□□□ -1.58
CSMD3-201ENST00000297405 TNNI2P48788 182 aa5.15□□□□□ -1.58
CSMD3-201ENST00000297405 C1DQ13901 141 aaKnown RBP5.15□□□□□ -1.58
CSMD3-201ENST00000297405 AFAP1Q8N556 730 aa5.15□□□□□ -1.58
CSMD3-201ENST00000297405 DIS3LQ8TF46 1054 aaKnown RBP5.15□□□□□ -1.58
CSMD3-201ENST00000297405 EXOC6BQ9Y2D4 811 aa5.15□□□□□ -1.58
CSMD3-201ENST00000297405 PCDHB13Q9Y5F0 798 aa5.15□□□□□ -1.58
CSMD3-201ENST00000297405 ABCC12Q96J65 1359 aa5.15□□□□□ -1.58
CSMD3-201ENST00000297405 ADGRA2Q96PE1 1338 aa5.15□□□□□ -1.58
CSMD3-201ENST00000297405 FREM1Q5H8C1 2179 aa5.15□□□□□ -1.58
CSMD3-201ENST00000297405 GFPT2O94808 682 aa5.15□□□□□ -1.58
CSMD3-201ENST00000297405 PGM3O95394 542 aa5.15□□□□□ -1.58
CSMD3-201ENST00000297405 IL6P05231 212 aa5.15□□□□□ -1.58
CSMD3-201ENST00000297405 TBL3Q12788 808 aaKnown RBP5.15□□□□□ -1.58
CSMD3-201ENST00000297405 CENPPQ6IPU0 288 aa5.15□□□□□ -1.58
CSMD3-201ENST00000297405 ANKRD13AQ8IZ07 590 aa5.15□□□□□ -1.58
CSMD3-201ENST00000297405 CCT8L2Q96SF2 557 aa5.15□□□□□ -1.58
CSMD3-201ENST00000297405 MAGEB5Q9BZ81 275 aa5.15□□□□□ -1.58
CSMD3-201ENST00000297405 FANCMQ8IYD8 2048 aa5.15□□□□□ -1.58
CSMD3-201ENST00000297405 H2AFZP0C0S5 128 aa5.15□□□□□ -1.58
CSMD3-201ENST00000297405 ABCB4P21439 1286 aa5.15□□□□□ -1.58
CSMD3-201ENST00000297405 LSP1P33241 339 aa5.15□□□□□ -1.58
CSMD3-201ENST00000297405 CCT8P50990 548 aa5.15□□□□□ -1.58
CSMD3-201ENST00000297405 MTX1Q13505 466 aa5.15□□□□□ -1.58
CSMD3-201ENST00000297405 H2AFVQ71UI9 128 aa5.15□□□□□ -1.58
CSMD3-201ENST00000297405 MYLK4Q86YV6 388 aaPredicted RBP5.15□□□□□ -1.58
CSMD3-201ENST00000297405 PDCD6IPQ8WUM4 868 aaKnown RBP5.15□□□□□ -1.58
CSMD3-201ENST00000297405 MNTQ99583 582 aa5.15□□□□□ -1.58
CSMD3-201ENST00000297405 ZKSCAN7Q9P0L1 754 aaPredicted RBP5.15□□□□□ -1.58
CSMD3-201ENST00000297405 ANKRD31Q8N7Z5 1873 aa5.15□□□□□ -1.59
CSMD3-201ENST00000297405 CA4P22748 312 aa5.15□□□□□ -1.59
CSMD3-201ENST00000297405 MLH1P40692 756 aa5.15□□□□□ -1.59
CSMD3-201ENST00000297405 XIAPP98170 497 aa5.15□□□□□ -1.59
CSMD3-201ENST00000297405 METTL24Q5JXM2 366 aa5.15□□□□□ -1.59
CSMD3-201ENST00000297405 FLCNQ8NFG4 579 aa5.15□□□□□ -1.59
CSMD3-201ENST00000297405 HPS3Q969F9 1004 aa5.15□□□□□ -1.59
CSMD3-201ENST00000297405 PDLIM2Q96JY6 352 aa5.15□□□□□ -1.59
CSMD3-201ENST00000297405 KLHL25Q9H0H3 589 aa5.15□□□□□ -1.59
CSMD3-201ENST00000297405 C20orf96Q9NUD7 363 aaPredicted RBP5.15□□□□□ -1.59
CSMD3-201ENST00000297405 ARMCX3Q9UH62 379 aaPredicted RBP5.15□□□□□ -1.59
CSMD3-201ENST00000297405 GPN3Q9UHW5 284 aaPredicted RBP5.15□□□□□ -1.59
CSMD3-201ENST00000297405 TAF4O00268 1085 aa5.15□□□□□ -1.59
CSMD3-201ENST00000297405 ASAP2O43150 1006 aa5.15□□□□□ -1.59
CSMD3-201ENST00000297405 NBNO60934 754 aa5.15□□□□□ -1.59
CSMD3-201ENST00000297405 ATP2B2Q01814 1243 aa5.15□□□□□ -1.59
CSMD3-201ENST00000297405 ITGB3BPQ13352 177 aaPredicted RBP5.15□□□□□ -1.59
CSMD3-201ENST00000297405 NLRP14Q86W24 1093 aa5.15□□□□□ -1.59
CSMD3-201ENST00000297405 TTC39CQ8N584 583 aa5.15□□□□□ -1.59
CSMD3-201ENST00000297405 GDAP1Q8TB36 358 aa5.15□□□□□ -1.59
CSMD3-201ENST00000297405 ROPN1BQ9BZX4 212 aaPredicted RBP5.15□□□□□ -1.59
CSMD3-201ENST00000297405 ROPN1Q9HAT0 212 aaPredicted RBP5.15□□□□□ -1.59
CSMD3-201ENST00000297405 DOCK6Q96HP0 2047 aa5.15□□□□□ -1.59
CSMD3-201ENST00000297405 RPS6KA5O75582 802 aa5.15□□□□□ -1.59
CSMD3-201ENST00000297405 KLHL18O94889 574 aa5.15□□□□□ -1.59
CSMD3-201ENST00000297405 SRGAP2CP0DJJ0 459 aa5.15□□□□□ -1.59
CSMD3-201ENST00000297405 CHRNA3P32297 505 aa5.15□□□□□ -1.59
CSMD3-201ENST00000297405 GUCY2FP51841 1108 aa5.15□□□□□ -1.59
CSMD3-201ENST00000297405 ZBED6P86452 979 aa5.15□□□□□ -1.59
CSMD3-201ENST00000297405 BICRALQ6AI39 1079 aa5.15□□□□□ -1.59
CSMD3-201ENST00000297405 IARS2Q9NSE4 1012 aaKnown RBP5.15□□□□□ -1.59
CSMD3-201ENST00000297405 HBS1LQ9Y450 684 aaKnown RBP5.15□□□□□ -1.59
CSMD3-201ENST00000297405 FHOD1Q9Y613 1164 aa5.15□□□□□ -1.59
CSMD3-201ENST00000297405 KLF18A0A0U1RQI7 1052 aa5.15□□□□□ -1.59
CSMD3-201ENST00000297405 CCT8L1PA6NM43 557 aa5.15□□□□□ -1.59
CSMD3-201ENST00000297405 IQCJ-SCHIP1C9J366 451 aaPredicted RBP5.15□□□□□ -1.59
CSMD3-201ENST00000297405 MYO1FO00160 1098 aa5.15□□□□□ -1.59
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms