RNA–Protein interactions for RNA: ENST00000263856.8

CHMP3-201, Transcript of charged multivesicular body protein 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CHMP3, Length 3,171 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP3-201ENST00000263856 MMEP08473 750 aa13.44□□□□□ -0.26
CHMP3-201ENST00000263856 RPSAP08865 295 aaKnown RBP13.44□□□□□ -0.26
CHMP3-201ENST00000263856 CHN1P15882 459 aa13.44□□□□□ -0.26
CHMP3-201ENST00000263856 BIRC3Q13489 604 aa13.44□□□□□ -0.26
CHMP3-201ENST00000263856 LRRC14Q15048 493 aa13.44□□□□□ -0.26
CHMP3-201ENST00000263856 C10orf76Q5T2E6 689 aa13.44□□□□□ -0.26
CHMP3-201ENST00000263856 LRIG3Q6UXM1 1119 aa13.44□□□□□ -0.26
CHMP3-201ENST00000263856 SLFN12Q8IYM2 578 aa13.44□□□□□ -0.26
CHMP3-201ENST00000263856 FBXO25Q8TCJ0 367 aa13.44□□□□□ -0.26
CHMP3-201ENST00000263856 TYW1Q9NV66 732 aaKnown RBP13.44□□□□□ -0.26
CHMP3-201ENST00000263856 SLC12A6Q9UHW9 1150 aa13.44□□□□□ -0.26
CHMP3-201ENST00000263856 RGS16O15492 202 aaPredicted RBP13.43□□□□□ -0.26
CHMP3-201ENST00000263856 FERP16591 822 aa13.43□□□□□ -0.26
CHMP3-201ENST00000263856 SHMT1P34896 483 aa13.43□□□□□ -0.26
CHMP3-201ENST00000263856 TCP11Q8WWU5 503 aa13.43□□□□□ -0.26
CHMP3-201ENST00000263856 HVCN1Q96D96 273 aa13.43□□□□□ -0.26
CHMP3-201ENST00000263856 HOOK2Q96ED9 719 aa13.43□□□□□ -0.26
CHMP3-201ENST00000263856 EML1O00423 815 aa13.43□□□□□ -0.26
CHMP3-201ENST00000263856 MARCKSL1P49006 195 aa13.43□□□□□ -0.26
CHMP3-201ENST00000263856 CBWD6Q4V339 395 aa13.43□□□□□ -0.26
CHMP3-201ENST00000263856 CBWD3Q5JTY5 395 aa13.43□□□□□ -0.26
CHMP3-201ENST00000263856 CBWD5Q5RIA9 395 aa13.43□□□□□ -0.26
CHMP3-201ENST00000263856 HIBCHQ6NVY1 386 aaPredicted RBP13.43□□□□□ -0.26
CHMP3-201ENST00000263856 KIAA0825Q8IV33 1275 aa13.43□□□□□ -0.26
CHMP3-201ENST00000263856 KIRREL3Q8IZU9 778 aa13.43□□□□□ -0.26
CHMP3-201ENST00000263856 ELAC2Q9BQ52 826 aaKnown RBP13.43□□□□□ -0.26
CHMP3-201ENST00000263856 RAB17Q9H0T7 212 aa13.43□□□□□ -0.26
CHMP3-201ENST00000263856 FAM114A2Q9NRY5 505 aa13.43□□□□□ -0.26
CHMP3-201ENST00000263856 ZBTB21Q9ULJ3 1066 aa13.43□□□□□ -0.26
CHMP3-201ENST00000263856 EXOC3O60645 756 aa13.42□□□□□ -0.26
CHMP3-201ENST00000263856 SPATA31C1P0DKV0 1188 aa13.42□□□□□ -0.26
CHMP3-201ENST00000263856 KCNJ1P48048 391 aa13.42□□□□□ -0.26
CHMP3-201ENST00000263856 MARSP56192 900 aaKnown RBP13.42□□□□□ -0.26
CHMP3-201ENST00000263856 IFI35P80217 286 aaPredicted RBP13.42□□□□□ -0.26
CHMP3-201ENST00000263856 SLC20A1Q8WUM9 679 aa13.42□□□□□ -0.26
CHMP3-201ENST00000263856 ZKSCAN4Q969J2 545 aaPredicted RBP13.42□□□□□ -0.26
CHMP3-201ENST00000263856 BTBD6Q96KE9 485 aa13.42□□□□□ -0.26
CHMP3-201ENST00000263856 EIF2AK1Q9BQI3 630 aaKnown RBP13.42□□□□□ -0.26
CHMP3-201ENST00000263856 SIX2Q9NPC8 291 aa13.42□□□□□ -0.26
CHMP3-201ENST00000263856 MAST2Q6P0Q8 1798 aa13.42□□□□□ -0.26
CHMP3-201ENST00000263856 PDXKO00764 312 aa13.42□□□□□ -0.26
CHMP3-201ENST00000263856 CLTAP09496 248 aa13.42□□□□□ -0.26
CHMP3-201ENST00000263856 SOX5P35711 763 aa13.42□□□□□ -0.26
CHMP3-201ENST00000263856 PMS2P54278 862 aa13.42□□□□□ -0.26
CHMP3-201ENST00000263856 SLC29A2Q14542 456 aa13.42□□□□□ -0.26
CHMP3-201ENST00000263856 SNCBQ16143 134 aa13.42□□□□□ -0.26
CHMP3-201ENST00000263856 DCAF12L1Q5VU92 463 aa13.42□□□□□ -0.26
CHMP3-201ENST00000263856 CYB5D1Q6P9G0 228 aa13.42□□□□□ -0.26
CHMP3-201ENST00000263856 PHLDB2Q86SQ0 1253 aa13.42□□□□□ -0.26
CHMP3-201ENST00000263856 SYT2Q8N9I0 419 aaPredicted RBP13.42□□□□□ -0.26
CHMP3-201ENST00000263856 EPS8L3Q8TE67 593 aaKnown RBP13.42□□□□□ -0.26
CHMP3-201ENST00000263856 TBC1D22AQ8WUA7 517 aa13.42□□□□□ -0.26
CHMP3-201ENST00000263856 CALR3Q96L12 384 aaKnown RBP13.42□□□□□ -0.26
CHMP3-201ENST00000263856 PRMT1Q99873 361 aaKnown RBP13.42□□□□□ -0.26
CHMP3-201ENST00000263856 ZC3H12CQ9C0D7 883 aaKnown RBP13.42□□□□□ -0.26
CHMP3-201ENST00000263856 CXorf56Q9H5V9 222 aa13.42□□□□□ -0.26
CHMP3-201ENST00000263856 SLITRK6Q9H5Y7 841 aa13.42□□□□□ -0.26
CHMP3-201ENST00000263856 METTL14Q9HCE5 456 aaKnown RBP13.42□□□□□ -0.26
CHMP3-201ENST00000263856 KCNMB3Q9NPA1 279 aa13.42□□□□□ -0.26
CHMP3-201ENST00000263856 ACP6Q9NPH0 428 aa13.42□□□□□ -0.26
CHMP3-201ENST00000263856 SUCLA2Q9P2R7 463 aaPredicted RBP13.42□□□□□ -0.26
CHMP3-201ENST00000263856 DBR1Q9UK59 544 aaKnown RBP13.42□□□□□ -0.26
CHMP3-201ENST00000263856 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP13.42□□□□□ -0.26
CHMP3-201ENST00000263856 NF2P35240 595 aa13.42□□□□□ -0.26
CHMP3-201ENST00000263856 SCTRP47872 440 aa13.42□□□□□ -0.26
CHMP3-201ENST00000263856 VPS41P49754 854 aa13.42□□□□□ -0.26
CHMP3-201ENST00000263856 ZYXQ15942 572 aaKnown RBP13.42□□□□□ -0.26
CHMP3-201ENST00000263856 ANKRD20A8PQ5CZ79 823 aa13.42□□□□□ -0.26
CHMP3-201ENST00000263856 PPP1R18Q6NYC8 613 aa13.42□□□□□ -0.26
CHMP3-201ENST00000263856 HS2ST1Q7LGA3 356 aa13.42□□□□□ -0.26
CHMP3-201ENST00000263856 CCDC105Q8IYK2 499 aa13.42□□□□□ -0.26
CHMP3-201ENST00000263856 KRT35Q92764 455 aa13.42□□□□□ -0.26
CHMP3-201ENST00000263856 DYDC2Q96IM9 177 aa13.42□□□□□ -0.26
CHMP3-201ENST00000263856 TRAF3IP3Q9Y228 551 aa13.42□□□□□ -0.26
CHMP3-201ENST00000263856 FRMD4BQ9Y2L6 1034 aa13.42□□□□□ -0.26
CHMP3-201ENST00000263856 CHUKO15111 745 aa13.41□□□□□ -0.26
CHMP3-201ENST00000263856 MSH4O15457 936 aa13.41□□□□□ -0.26
CHMP3-201ENST00000263856 SNHG28P0DPA3 235 aa13.41□□□□□ -0.26
CHMP3-201ENST00000263856 PSMC2P35998 433 aaKnown RBP13.41□□□□□ -0.26
CHMP3-201ENST00000263856 NT5C2P49902 561 aa13.41□□□□□ -0.26
CHMP3-201ENST00000263856 NSMFQ6X4W1 530 aa13.41□□□□□ -0.26
CHMP3-201ENST00000263856 HOOK3Q86VS8 718 aa13.41□□□□□ -0.26
CHMP3-201ENST00000263856 PARP9Q8IXQ6 854 aa13.41□□□□□ -0.26
CHMP3-201ENST00000263856 FAM178BQ8IXR5 827 aa13.41□□□□□ -0.26
CHMP3-201ENST00000263856 ANKRD42Q8N9B4 389 aa13.41□□□□□ -0.26
CHMP3-201ENST00000263856 NEK9Q8TD19 979 aa13.41□□□□□ -0.26
CHMP3-201ENST00000263856 RFFLQ8WZ73 363 aa13.41□□□□□ -0.26
CHMP3-201ENST00000263856 FOXO6A8MYZ6 492 aa13.41□□□□□ -0.26
CHMP3-201ENST00000263856 TISP43B9A030 160 aa13.41□□□□□ -0.26
CHMP3-201ENST00000263856 MEIS2O14770 477 aa13.41□□□□□ -0.26
CHMP3-201ENST00000263856 SERPINB2P05120 415 aa13.41□□□□□ -0.26
CHMP3-201ENST00000263856 RPA1P27694 616 aa13.41□□□□□ -0.26
CHMP3-201ENST00000263856 FMO5P49326 533 aa13.41□□□□□ -0.26
CHMP3-201ENST00000263856 MYL7Q01449 175 aa13.41□□□□□ -0.26
CHMP3-201ENST00000263856 SNX1Q13596 522 aa13.41□□□□□ -0.26
CHMP3-201ENST00000263856 CERKLQ49MI3 558 aaPredicted RBP13.41□□□□□ -0.26
CHMP3-201ENST00000263856 ODR4Q5SWX8 454 aa13.41□□□□□ -0.26
CHMP3-201ENST00000263856 CCDC174Q6PII3 467 aa13.41□□□□□ -0.26
CHMP3-201ENST00000263856 TBC1D1Q86TI0 1168 aaPredicted RBP13.41□□□□□ -0.26
CHMP3-201ENST00000263856 FBXO11Q86XK2 927 aa13.41□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 17.4 ms