RNA–Protein interactions for RNA: ENST00000637988.1

SCN1A-217, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,562 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-217ENST00000637988 GOLGA8MH3BSY2 632 aa6.56□□□□□ -1.36
SCN1A-217ENST00000637988 GH2P01242 217 aa6.56□□□□□ -1.36
SCN1A-217ENST00000637988 RPN1P04843 607 aaKnown RBP6.56□□□□□ -1.36
SCN1A-217ENST00000637988 MSH2P43246 934 aa6.56□□□□□ -1.36
SCN1A-217ENST00000637988 FAM117BQ6P1L5 589 aa6.56□□□□□ -1.36
SCN1A-217ENST00000637988 MB21D1Q8N884 522 aa6.56□□□□□ -1.36
SCN1A-217ENST00000637988 APPL2Q8NEU8 664 aa6.56□□□□□ -1.36
SCN1A-217ENST00000637988 ZNF512Q96ME7 567 aaPredicted RBP6.56□□□□□ -1.36
SCN1A-217ENST00000637988 TBC1D32Q96NH3 1257 aa6.56□□□□□ -1.36
SCN1A-217ENST00000637988 PPP1R2P1Q96PQ5 205 aa6.56□□□□□ -1.36
SCN1A-217ENST00000637988 SARS2Q9NP81 518 aaKnown RBP6.56□□□□□ -1.36
SCN1A-217ENST00000637988 GCNT4Q9P109 453 aa6.56□□□□□ -1.36
SCN1A-217ENST00000637988 HERC5Q9UII4 1024 aaKnown RBP6.56□□□□□ -1.36
SCN1A-217ENST00000637988 PCDHB9Q9Y5E1 797 aa6.56□□□□□ -1.36
SCN1A-217ENST00000637988 LAMC1P11047 1609 aa6.56□□□□□ -1.36
SCN1A-217ENST00000637988 ABCC12Q96J65 1359 aa6.55□□□□□ -1.36
SCN1A-217ENST00000637988 PFASO15067 1338 aa6.55□□□□□ -1.36
SCN1A-217ENST00000637988 GPSM2P81274 684 aa6.55□□□□□ -1.36
SCN1A-217ENST00000637988 LBRQ14739 615 aaKnown RBP6.55□□□□□ -1.36
SCN1A-217ENST00000637988 CDO1Q16878 200 aa6.55□□□□□ -1.36
SCN1A-217ENST00000637988 THNSL1Q8IYQ7 743 aa6.55□□□□□ -1.36
SCN1A-217ENST00000637988 GPATCH11Q8N954 259 aa6.55□□□□□ -1.36
SCN1A-217ENST00000637988 CALR3Q96L12 384 aaKnown RBP6.55□□□□□ -1.36
SCN1A-217ENST00000637988 NCOA5Q9HCD5 579 aaKnown RBP6.55□□□□□ -1.36
SCN1A-217ENST00000637988 ASNSD1Q9NWL6 643 aa6.55□□□□□ -1.36
SCN1A-217ENST00000637988 THEGQ9P2T0 379 aa6.55□□□□□ -1.36
SCN1A-217ENST00000637988 GTF3C5Q9Y5Q8 519 aaPredicted RBP6.55□□□□□ -1.36
SCN1A-217ENST00000637988 CEP170Q5SW79 1584 aa6.55□□□□□ -1.36
SCN1A-217ENST00000637988 CCL15-CCL14A0A0B4J2E2 113 aa6.55□□□□□ -1.36
SCN1A-217ENST00000637988 C19orf81C9J6K1 198 aa6.55□□□□□ -1.36
SCN1A-217ENST00000637988 TBXAS1P24557 533 aaPredicted RBP6.55□□□□□ -1.36
SCN1A-217ENST00000637988 KRT76Q01546 638 aa6.55□□□□□ -1.36
SCN1A-217ENST00000637988 CCL15Q16663 113 aa6.55□□□□□ -1.36
SCN1A-217ENST00000637988 DGKDQ16760 1214 aa6.55□□□□□ -1.36
SCN1A-217ENST00000637988 GPRC5AQ8NFJ5 357 aa6.55□□□□□ -1.36
SCN1A-217ENST00000637988 NCLNQ969V3 563 aa6.55□□□□□ -1.36
SCN1A-217ENST00000637988 PHF21AQ96BD5 680 aa6.55□□□□□ -1.36
SCN1A-217ENST00000637988 UTP6Q9NYH9 597 aaKnown RBP6.55□□□□□ -1.36
SCN1A-217ENST00000637988 SEL1LQ9UBV2 794 aa6.55□□□□□ -1.36
SCN1A-217ENST00000637988 CNOT7Q9UIV1 285 aaKnown RBP6.55□□□□□ -1.36
SCN1A-217ENST00000637988 ASAP1Q9ULH1 1129 aa6.55□□□□□ -1.36
SCN1A-217ENST00000637988 MYOM2P54296 1465 aa6.55□□□□□ -1.36
SCN1A-217ENST00000637988 PLEKHG1Q9ULL1 1385 aa6.55□□□□□ -1.36
SCN1A-217ENST00000637988 EEF1GP26641 437 aaKnown RBP6.55□□□□□ -1.36
SCN1A-217ENST00000637988 UBE3CQ15386 1083 aa6.55□□□□□ -1.36
SCN1A-217ENST00000637988 RBBP7Q16576 425 aa6.55□□□□□ -1.36
SCN1A-217ENST00000637988 ZC3H12BQ5HYM0 836 aaKnown RBP6.55□□□□□ -1.36
SCN1A-217ENST00000637988 FAM83BQ5T0W9 1011 aa6.55□□□□□ -1.36
SCN1A-217ENST00000637988 TAS2R42Q7RTR8 314 aa6.55□□□□□ -1.36
SCN1A-217ENST00000637988 ARHGAP30Q7Z6I6 1101 aaPredicted RBP6.55□□□□□ -1.36
SCN1A-217ENST00000637988 LRRC43Q8N309 656 aa6.55□□□□□ -1.36
SCN1A-217ENST00000637988 KLHDC4Q8TBB5 520 aa6.55□□□□□ -1.36
SCN1A-217ENST00000637988 CSGALNACT1Q8TDX6 532 aa6.55□□□□□ -1.36
SCN1A-217ENST00000637988 ZNF274Q96GC6 653 aaPredicted RBP6.55□□□□□ -1.36
SCN1A-217ENST00000637988 MRFAP1L1Q96HT8 127 aa6.55□□□□□ -1.36
SCN1A-217ENST00000637988 ZNRF3Q9ULT6 936 aa6.55□□□□□ -1.36
SCN1A-217ENST00000637988 CROCC2H7BZ55 1655 aa6.55□□□□□ -1.36
SCN1A-217ENST00000637988 SYNDIG1LA6NDD5 238 aa6.55□□□□□ -1.36
SCN1A-217ENST00000637988 VAMP4O75379 141 aa6.55□□□□□ -1.36
SCN1A-217ENST00000637988 TJP3O95049 919 aa6.55□□□□□ -1.36
SCN1A-217ENST00000637988 SUPT20HL2P0C7V6 817 aa6.55□□□□□ -1.36
SCN1A-217ENST00000637988 HARS2P49590 506 aaKnown RBP6.55□□□□□ -1.36
SCN1A-217ENST00000637988 VPS41P49754 854 aa6.55□□□□□ -1.36
SCN1A-217ENST00000637988 AP3B2Q13367 1082 aa6.55□□□□□ -1.36
SCN1A-217ENST00000637988 CEP55Q53EZ4 464 aa6.55□□□□□ -1.36
SCN1A-217ENST00000637988 ITPRIPL1Q6GPH6 555 aa6.55□□□□□ -1.36
SCN1A-217ENST00000637988 ADCK2Q7Z695 626 aa6.55□□□□□ -1.36
SCN1A-217ENST00000637988 CEP19Q96LK0 163 aa6.55□□□□□ -1.36
SCN1A-217ENST00000637988 KIFC3Q9BVG8 833 aa6.55□□□□□ -1.36
SCN1A-217ENST00000637988 POLR3EQ9NVU0 708 aa6.55□□□□□ -1.36
SCN1A-217ENST00000637988 PIN4Q9Y237 131 aaKnown RBP6.55□□□□□ -1.36
SCN1A-217ENST00000637988 PTPN22Q9Y2R2 807 aa6.55□□□□□ -1.36
SCN1A-217ENST00000637988 PZPP20742 1482 aa6.55□□□□□ -1.36
SCN1A-217ENST00000637988 YY1P25490 414 aa6.55□□□□□ -1.36
SCN1A-217ENST00000637988 POLR2FP61218 127 aaKnown RBP6.55□□□□□ -1.36
SCN1A-217ENST00000637988 PDE1CQ14123 709 aaPredicted RBP6.55□□□□□ -1.36
SCN1A-217ENST00000637988 KRT71Q3SY84 523 aa6.55□□□□□ -1.36
SCN1A-217ENST00000637988 ERO1AQ96HE7 468 aa6.55□□□□□ -1.36
SCN1A-217ENST00000637988 AHCYL2Q96HN2 611 aaKnown RBP6.55□□□□□ -1.36
SCN1A-217ENST00000637988 UNC45AQ9H3U1 944 aa6.55□□□□□ -1.36
SCN1A-217ENST00000637988 SMARCAD1Q9H4L7 1026 aa6.55□□□□□ -1.36
SCN1A-217ENST00000637988 DDX41Q9UJV9 622 aaKnown RBP6.55□□□□□ -1.36
SCN1A-217ENST00000637988 MAGI2Q86UL8 1455 aa6.55□□□□□ -1.36
SCN1A-217ENST00000637988 SPDYE5A6NIY4 337 aa6.55□□□□□ -1.36
SCN1A-217ENST00000637988 RPS6KA4O75676 772 aa6.55□□□□□ -1.36
SCN1A-217ENST00000637988 DDHD2O94830 711 aa6.55□□□□□ -1.36
SCN1A-217ENST00000637988 MX2P20592 715 aa6.55□□□□□ -1.36
SCN1A-217ENST00000637988 HADHAP40939 763 aa6.55□□□□□ -1.36
SCN1A-217ENST00000637988 RAP1GDS1P52306 607 aa6.55□□□□□ -1.36
SCN1A-217ENST00000637988 EZH2Q15910 746 aaKnown RBP6.55□□□□□ -1.36
SCN1A-217ENST00000637988 SPDYE7PQ495Y7 208 aa6.55□□□□□ -1.36
SCN1A-217ENST00000637988 PPP4R3CPQ6ZMV5 832 aa6.55□□□□□ -1.36
SCN1A-217ENST00000637988 C16orf62Q7Z3J2 963 aa6.55□□□□□ -1.36
SCN1A-217ENST00000637988 DDX42Q86XP3 938 aaKnown RBP eCLIP6.55□□□□□ -1.36
SCN1A-217ENST00000637988 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP6.55□□□□□ -1.36
SCN1A-217ENST00000637988 GAS2L1Q99501 681 aaPredicted RBP6.55□□□□□ -1.36
SCN1A-217ENST00000637988 CYP26B1Q9NR63 512 aa6.55□□□□□ -1.36
SCN1A-217ENST00000637988 FIS1Q9Y3D6 152 aa6.55□□□□□ -1.36
SCN1A-217ENST00000637988 AP3B1O00203 1094 aa6.55□□□□□ -1.36
SCN1A-217ENST00000637988 ERVK-10P10266 1014 aa6.55□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms