RNA–Protein interactions for RNA: ENST00000636839.1

CLN3-250, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,018 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-250ENST00000636839 FAM160B1Q5W0V3 765 aa22.23■■□□□ 1.15
CLN3-250ENST00000636839 OLFML2BQ68BL8 750 aa22.23■■□□□ 1.15
CLN3-250ENST00000636839 APTXQ7Z2E3 356 aaKnown RBP22.23■■□□□ 1.15
CLN3-250ENST00000636839 MSL3Q8N5Y2 521 aaKnown RBP22.23■■□□□ 1.15
CLN3-250ENST00000636839 CSGALNACT2Q8N6G5 542 aa22.23■■□□□ 1.15
CLN3-250ENST00000636839 CEP89Q96ST8 783 aa22.23■■□□□ 1.15
CLN3-250ENST00000636839 TNFAIP2Q03169 654 aa22.23■■□□□ 1.15
CLN3-250ENST00000636839 PRKCZQ05513 592 aa22.23■■□□□ 1.15
CLN3-250ENST00000636839 GTPBP4Q9BZE4 634 aaKnown RBP22.23■■□□□ 1.15
CLN3-250ENST00000636839 KCTD10Q9H3F6 313 aa22.23■■□□□ 1.15
CLN3-250ENST00000636839 OLFML3Q9NRN5 406 aa22.23■■□□□ 1.15
CLN3-250ENST00000636839 INTS13Q9NVM9 706 aa22.23■■□□□ 1.15
CLN3-250ENST00000636839 HTTP42858 3142 aa22.22■■□□□ 1.15
CLN3-250ENST00000636839 SP3Q02447 781 aa22.22■■□□□ 1.15
CLN3-250ENST00000636839 IQSEC1Q6DN90 963 aa22.22■■□□□ 1.15
CLN3-250ENST00000636839 ZNF720Q7Z2F6 126 aa22.22■■□□□ 1.15
CLN3-250ENST00000636839 FAM178BQ8IXR5 827 aa22.22■■□□□ 1.15
CLN3-250ENST00000636839 BSNDQ8WZ55 320 aa22.22■■□□□ 1.15
CLN3-250ENST00000636839 ZBTB10Q96DT7 871 aa22.22■■□□□ 1.15
CLN3-250ENST00000636839 NIFKQ9BYG3 293 aaKnown RBP22.22■■□□□ 1.15
CLN3-250ENST00000636839 RNPEPQ9H4A4 650 aa22.22■■□□□ 1.15
CLN3-250ENST00000636839 ZNF286BP0CG31 522 aa22.21■■□□□ 1.15
CLN3-250ENST00000636839 UBASH3AP57075 661 aa22.21■■□□□ 1.15
CLN3-250ENST00000636839 PLCB4Q15147 1175 aa22.21■■□□□ 1.15
CLN3-250ENST00000636839 ZCWPW2Q504Y3 356 aa22.21■■□□□ 1.15
CLN3-250ENST00000636839 KIFC3Q9BVG8 833 aa22.21■■□□□ 1.15
CLN3-250ENST00000636839 NRBP1Q9UHY1 535 aa22.21■■□□□ 1.15
CLN3-250ENST00000636839 MGAMO43451 1857 aa22.21■■□□□ 1.15
CLN3-250ENST00000636839 PEX3P56589 373 aa22.21■■□□□ 1.15
CLN3-250ENST00000636839 TRIM32Q13049 653 aa22.21■■□□□ 1.15
CLN3-250ENST00000636839 TARBP2Q15633 366 aaKnown RBP22.21■■□□□ 1.15
CLN3-250ENST00000636839 TRPV1Q8NER1 839 aa22.21■■□□□ 1.15
CLN3-250ENST00000636839 OR6J1Q8NGC5 347 aa22.21■■□□□ 1.15
CLN3-250ENST00000636839 PPTC7Q8NI37 304 aa22.21■■□□□ 1.15
CLN3-250ENST00000636839 TRAPPC12Q8WVT3 735 aa22.21■■□□□ 1.15
CLN3-250ENST00000636839 TMEM143Q96AN5 459 aa22.21■■□□□ 1.15
CLN3-250ENST00000636839 LOXHD1Q8IVV2 1947 aa22.2■■□□□ 1.14
CLN3-250ENST00000636839 BICDL2A1A5D9 508 aa22.2■■□□□ 1.14
CLN3-250ENST00000636839 ZBTB42B2RXF5 422 aa22.2■■□□□ 1.14
CLN3-250ENST00000636839 KCNJ18B7U540 433 aa22.2■■□□□ 1.14
CLN3-250ENST00000636839 DYNC1LI2O43237 492 aaPredicted RBP22.2■■□□□ 1.14
CLN3-250ENST00000636839 LGALS2P05162 132 aa22.2■■□□□ 1.14
CLN3-250ENST00000636839 PLS3P13797 630 aa22.2■■□□□ 1.14
CLN3-250ENST00000636839 MAP2K2P36507 400 aa22.2■■□□□ 1.14
CLN3-250ENST00000636839 KCNJ12Q14500 433 aa22.2■■□□□ 1.14
CLN3-250ENST00000636839 PLPPR4Q7Z2D5 763 aa22.2■■□□□ 1.14
CLN3-250ENST00000636839 REM2Q8IYK8 340 aaPredicted RBP22.2■■□□□ 1.14
CLN3-250ENST00000636839 TRIB2Q92519 343 aa22.2■■□□□ 1.14
CLN3-250ENST00000636839 EMID1Q96A84 441 aaPredicted RBP22.2■■□□□ 1.14
CLN3-250ENST00000636839 NRBP2Q9NSY0 501 aa22.2■■□□□ 1.14
CLN3-250ENST00000636839 DGAT1O75907 488 aa22.19■■□□□ 1.14
CLN3-250ENST00000636839 PPP1R2P41236 205 aa22.19■■□□□ 1.14
CLN3-250ENST00000636839 EMC2Q15006 297 aa22.19■■□□□ 1.14
CLN3-250ENST00000636839 TCP11X2Q5H9J9 407 aa22.19■■□□□ 1.14
CLN3-250ENST00000636839 ZNF507Q8TCN5 953 aa22.19■■□□□ 1.14
CLN3-250ENST00000636839 MRFAP1L1Q96HT8 127 aa22.19■■□□□ 1.14
CLN3-250ENST00000636839 GNEQ9Y223 722 aaKnown RBP22.19■■□□□ 1.14
CLN3-250ENST00000636839 EMSYQ7Z589 1322 aa22.19■■□□□ 1.14
CLN3-250ENST00000636839 SLC16A4O15374 487 aa22.19■■□□□ 1.14
CLN3-250ENST00000636839 POLGP54098 1239 aaPredicted RBP22.19■■□□□ 1.14
CLN3-250ENST00000636839 DRP2Q13474 957 aa22.19■■□□□ 1.14
CLN3-250ENST00000636839 KRT31Q15323 416 aa22.19■■□□□ 1.14
CLN3-250ENST00000636839 KNOP1Q1ED39 458 aaKnown RBP22.19■■□□□ 1.14
CLN3-250ENST00000636839 DRC7Q8IY82 874 aa22.19■■□□□ 1.14
CLN3-250ENST00000636839 CD99L2Q8TCZ2 262 aa22.19■■□□□ 1.14
CLN3-250ENST00000636839 PPP1R13LQ8WUF5 828 aa22.19■■□□□ 1.14
CLN3-250ENST00000636839 SMARCAD1Q9H4L7 1026 aa22.19■■□□□ 1.14
CLN3-250ENST00000636839 DHX33Q9H6R0 707 aaKnown RBP22.19■■□□□ 1.14
CLN3-250ENST00000636839 ATP6V0A4Q9HBG4 840 aa22.19■■□□□ 1.14
CLN3-250ENST00000636839 SEL1LQ9UBV2 794 aa22.19■■□□□ 1.14
CLN3-250ENST00000636839 ARID2Q68CP9 1835 aa22.19■■□□□ 1.14
CLN3-250ENST00000636839 LRRC55Q6ZSA7 311 aa22.18■■□□□ 1.14
CLN3-250ENST00000636839 ATP8B4Q8TF62 1192 aa22.18■■□□□ 1.14
CLN3-250ENST00000636839 DRC1Q96MC2 740 aa22.18■■□□□ 1.14
CLN3-250ENST00000636839 C16orf70Q9BSU1 422 aa22.18■■□□□ 1.14
CLN3-250ENST00000636839 STRA6Q9BX79 667 aa22.18■■□□□ 1.14
CLN3-250ENST00000636839 TAB2Q9NYJ8 693 aa22.18■■□□□ 1.14
CLN3-250ENST00000636839 LARSQ9P2J5 1176 aaKnown RBP22.18■■□□□ 1.14
CLN3-250ENST00000636839 MYH11P35749 1972 aa22.18■■□□□ 1.14
CLN3-250ENST00000636839 K7ENM7 598 aa22.18■■□□□ 1.14
CLN3-250ENST00000636839 TEX33O43247 280 aa22.18■■□□□ 1.14
CLN3-250ENST00000636839 MMP3P08254 477 aa22.18■■□□□ 1.14
CLN3-250ENST00000636839 NPTX2P47972 431 aa22.18■■□□□ 1.14
CLN3-250ENST00000636839 BMT2Q1RMZ1 405 aa22.18■■□□□ 1.14
CLN3-250ENST00000636839 POLR3FQ9H1D9 316 aaPredicted RBP22.18■■□□□ 1.14
CLN3-250ENST00000636839 THAP9Q9H5L6 903 aa22.18■■□□□ 1.14
CLN3-250ENST00000636839 TRPC6Q9Y210 931 aa22.18■■□□□ 1.14
CLN3-250ENST00000636839 CEP350Q5VT06 3117 aa22.17■■□□□ 1.14
CLN3-250ENST00000636839 ZMYM2Q9UBW7 1377 aa22.17■■□□□ 1.14
CLN3-250ENST00000636839 CCDC169A6NNP5 214 aa22.17■■□□□ 1.14
CLN3-250ENST00000636839 TGFB1I1O43294 461 aa22.17■■□□□ 1.14
CLN3-250ENST00000636839 PPP1R37O75864 691 aa22.17■■□□□ 1.14
CLN3-250ENST00000636839 LRRC63Q05C16 580 aa22.17■■□□□ 1.14
CLN3-250ENST00000636839 BBXQ8WY36 941 aaPredicted RBP22.17■■□□□ 1.14
CLN3-250ENST00000636839 VPS16Q9H269 839 aa22.17■■□□□ 1.14
CLN3-250ENST00000636839 XRCC5P13010 732 aaKnown RBP22.16■■□□□ 1.14
CLN3-250ENST00000636839 TIPINQ9BVW5 301 aa22.16■■□□□ 1.14
CLN3-250ENST00000636839 BRCA2P51587 3418 aa22.16■■□□□ 1.14
CLN3-250ENST00000636839 TISP43B9A030 160 aa22.16■■□□□ 1.14
CLN3-250ENST00000636839 CLIC2O15247 247 aa22.16■■□□□ 1.14
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms