RNA–Protein interactions for RNA: ENST00000635893.1

SCN1A-211, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 168 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-211ENST00000635893 LDLRAD3Q86YD5 345 aa5.08□□□□□ -1.6
SCN1A-211ENST00000635893 CISD2Q8N5K1 135 aaKnown RBP5.08□□□□□ -1.6
SCN1A-211ENST00000635893 LARP4BQ92615 738 aaKnown RBP5.08□□□□□ -1.6
SCN1A-211ENST00000635893 LPPQ93052 612 aa5.08□□□□□ -1.6
SCN1A-211ENST00000635893 NBPF4Q96M43 638 aa5.08□□□□□ -1.6
SCN1A-211ENST00000635893 CELF4Q9BZC1 486 aaKnown RBP5.08□□□□□ -1.6
SCN1A-211ENST00000635893 CCDC85CA6NKD9 419 aa5.07□□□□□ -1.6
SCN1A-211ENST00000635893 GOLGA6L22H0YM25 854 aa5.07□□□□□ -1.6
SCN1A-211ENST00000635893 EFCAB14O75071 495 aa5.07□□□□□ -1.6
SCN1A-211ENST00000635893 PEX11BO96011 259 aa5.07□□□□□ -1.6
SCN1A-211ENST00000635893 APEX1P27695 318 aaKnown RBP5.07□□□□□ -1.6
SCN1A-211ENST00000635893 SDHAP31040 664 aa5.07□□□□□ -1.6
SCN1A-211ENST00000635893 RRP1BQ14684 758 aaKnown RBP5.07□□□□□ -1.6
SCN1A-211ENST00000635893 TM4SF20Q53R12 229 aa5.07□□□□□ -1.6
SCN1A-211ENST00000635893 ZC3H12BQ5HYM0 836 aaKnown RBP5.07□□□□□ -1.6
SCN1A-211ENST00000635893 ZNF575Q86XF7 245 aa5.07□□□□□ -1.6
SCN1A-211ENST00000635893 ANKRD35Q8N283 1001 aa5.07□□□□□ -1.6
SCN1A-211ENST00000635893 RABGGTAQ92696 567 aa5.07□□□□□ -1.6
SCN1A-211ENST00000635893 DLG3Q92796 817 aa5.07□□□□□ -1.6
SCN1A-211ENST00000635893 HECAQ9UBI9 543 aaPredicted RBP5.07□□□□□ -1.6
SCN1A-211ENST00000635893 REXO2Q9Y3B8 237 aaKnown RBP5.07□□□□□ -1.6
SCN1A-211ENST00000635893 CTDP1Q9Y5B0 961 aaPredicted RBP5.07□□□□□ -1.6
SCN1A-211ENST00000635893 B3GALT1Q9Y5Z6 326 aa5.07□□□□□ -1.6
SCN1A-211ENST00000635893 LOC101059915A0A1B0GWI6 518 aaPredicted RBP5.06□□□□□ -1.6
SCN1A-211ENST00000635893 A0A1W2PRX2 142 aa5.06□□□□□ -1.6
SCN1A-211ENST00000635893 RASSF10A6NK89 507 aa5.06□□□□□ -1.6
SCN1A-211ENST00000635893 SESN2P58004 480 aaPredicted RBP5.06□□□□□ -1.6
SCN1A-211ENST00000635893 CRHR2Q13324 411 aa5.06□□□□□ -1.6
SCN1A-211ENST00000635893 ADAM15Q13444 863 aa5.06□□□□□ -1.6
SCN1A-211ENST00000635893 MRGPRGQ86SM5 289 aa5.06□□□□□ -1.6
SCN1A-211ENST00000635893 BCL6BQ8N143 479 aaPredicted RBP5.06□□□□□ -1.6
SCN1A-211ENST00000635893 GSTCDQ8NEC7 633 aa5.06□□□□□ -1.6
SCN1A-211ENST00000635893 CLIP3Q96DZ5 547 aa5.06□□□□□ -1.6
SCN1A-211ENST00000635893 MAGEB10Q96LZ2 347 aaPredicted RBP5.06□□□□□ -1.6
SCN1A-211ENST00000635893 PRRX2Q99811 253 aa5.06□□□□□ -1.6
SCN1A-211ENST00000635893 SLC52A2Q9HAB3 445 aa5.06□□□□□ -1.6
SCN1A-211ENST00000635893 SIRPGQ9P1W8 387 aa5.06□□□□□ -1.6
SCN1A-211ENST00000635893 NDOR1Q9UHB4 597 aa5.06□□□□□ -1.6
SCN1A-211ENST00000635893 COQ6Q9Y2Z9 468 aa5.06□□□□□ -1.6
SCN1A-211ENST00000635893 KDM2BQ8NHM5 1336 aa5.05□□□□□ -1.6
SCN1A-211ENST00000635893 SLC12A8A0AV02 714 aa5.05□□□□□ -1.6
SCN1A-211ENST00000635893 HIP1RO75146 1068 aa5.05□□□□□ -1.6
SCN1A-211ENST00000635893 ADCY7P51828 1080 aa5.05□□□□□ -1.6
SCN1A-211ENST00000635893 NANOS3P60323 173 aaKnown RBP5.05□□□□□ -1.6
SCN1A-211ENST00000635893 ZC3H6P61129 1189 aaKnown RBP5.05□□□□□ -1.6
SCN1A-211ENST00000635893 KRTAP15-1Q3LI76 137 aa5.05□□□□□ -1.6
SCN1A-211ENST00000635893 CATSPEREQ5SY80 951 aa5.05□□□□□ -1.6
SCN1A-211ENST00000635893 FSTL4Q6MZW2 842 aa5.05□□□□□ -1.6
SCN1A-211ENST00000635893 KLHDC10Q6PID8 442 aa5.05□□□□□ -1.6
SCN1A-211ENST00000635893 ZNF627Q7L945 461 aa5.05□□□□□ -1.6
SCN1A-211ENST00000635893 OVCH1Q7RTY7 1134 aa5.05□□□□□ -1.6
SCN1A-211ENST00000635893 SLC6A15Q9H2J7 730 aa5.05□□□□□ -1.6
SCN1A-211ENST00000635893 SLC2A4RGQ9NR83 387 aa5.05□□□□□ -1.6
SCN1A-211ENST00000635893 PPP1R1BQ9UD71 204 aaPredicted RBP5.05□□□□□ -1.6
SCN1A-211ENST00000635893 SH3BP1Q9Y3L3 701 aa5.05□□□□□ -1.6
SCN1A-211ENST00000635893 H2AFYO75367 372 aaKnown RBP5.04□□□□□ -1.6
SCN1A-211ENST00000635893 RASGRP1O95267 797 aa5.04□□□□□ -1.6
SCN1A-211ENST00000635893 ATP2C1P98194 919 aaPredicted RBP5.04□□□□□ -1.6
SCN1A-211ENST00000635893 ALDH6A1Q02252 535 aaKnown RBP5.04□□□□□ -1.6
SCN1A-211ENST00000635893 SAFB2Q14151 953 aaKnown RBP eCLIP5.04□□□□□ -1.6
SCN1A-211ENST00000635893 TMEM132BQ14DG7 1078 aa5.04□□□□□ -1.6
SCN1A-211ENST00000635893 TRIM61Q5EBN2 209 aa5.04□□□□□ -1.6
SCN1A-211ENST00000635893 DNAJC10Q8IXB1 793 aa5.04□□□□□ -1.6
SCN1A-211ENST00000635893 ULK2Q8IYT8 1036 aa5.04□□□□□ -1.6
SCN1A-211ENST00000635893 GFM2Q969S9 779 aaKnown RBP5.04□□□□□ -1.6
SCN1A-211ENST00000635893 MIEF2Q96C03 454 aa5.04□□□□□ -1.6
SCN1A-211ENST00000635893 ZG16BQ96DA0 208 aa5.04□□□□□ -1.6
SCN1A-211ENST00000635893 RAMP2O60895 175 aa5.03□□□□□ -1.6
SCN1A-211ENST00000635893 PPFIA2O75334 1257 aa5.03□□□□□ -1.6
SCN1A-211ENST00000635893 NPTXRO95502 500 aa5.03□□□□□ -1.6
SCN1A-211ENST00000635893 CNGB1Q14028 1251 aaPredicted RBP5.03□□□□□ -1.6
SCN1A-211ENST00000635893 PCSK4Q6UW60 755 aa5.03□□□□□ -1.6
SCN1A-211ENST00000635893 ZNF662Q6ZS27 426 aa5.03□□□□□ -1.6
SCN1A-211ENST00000635893 SLC7A14Q8TBB6 771 aa5.03□□□□□ -1.6
SCN1A-211ENST00000635893 ERCC4Q92889 916 aaPredicted RBP5.03□□□□□ -1.6
SCN1A-211ENST00000635893 E2F7Q96AV8 911 aa5.03□□□□□ -1.6
SCN1A-211ENST00000635893 ZNF428Q96B54 188 aa5.03□□□□□ -1.6
SCN1A-211ENST00000635893 SLC7A6OSQ96CW6 309 aaPredicted RBP5.03□□□□□ -1.6
SCN1A-211ENST00000635893 AGAP2Q99490 1192 aa5.03□□□□□ -1.6
SCN1A-211ENST00000635893 FOXB1Q99853 325 aa5.03□□□□□ -1.6
SCN1A-211ENST00000635893 SAE1Q9UBE0 346 aaPredicted RBP5.03□□□□□ -1.6
SCN1A-211ENST00000635893 CCDC9Q9Y3X0 531 aaKnown RBP5.03□□□□□ -1.6
SCN1A-211ENST00000635893 DMRT1Q9Y5R6 373 aa5.03□□□□□ -1.6
SCN1A-211ENST00000635893 TGM1P22735 817 aa5.02□□□□□ -1.61
SCN1A-211ENST00000635893 STAT3P40763 770 aa5.02□□□□□ -1.61
SCN1A-211ENST00000635893 MAN2A2P49641 1150 aa5.02□□□□□ -1.61
SCN1A-211ENST00000635893 SCNN1GP51170 649 aa5.02□□□□□ -1.61
SCN1A-211ENST00000635893 SLC25A3Q00325 362 aa5.02□□□□□ -1.61
SCN1A-211ENST00000635893 IRF9Q00978 393 aa5.02□□□□□ -1.61
SCN1A-211ENST00000635893 CC2D1AQ6P1N0 951 aaPredicted RBP5.02□□□□□ -1.61
SCN1A-211ENST00000635893 Q6ZRM9 215 aa5.02□□□□□ -1.61
SCN1A-211ENST00000635893 LRP10Q7Z4F1 713 aa5.02□□□□□ -1.61
SCN1A-211ENST00000635893 RTN4RL1Q86UN2 441 aaPredicted RBP5.02□□□□□ -1.61
SCN1A-211ENST00000635893 GSPT2Q8IYD1 628 aaKnown RBP5.02□□□□□ -1.61
SCN1A-211ENST00000635893 C2orf69Q8N8R5 385 aa5.02□□□□□ -1.61
SCN1A-211ENST00000635893 GCDHQ92947 438 aaPredicted RBP5.02□□□□□ -1.61
SCN1A-211ENST00000635893 FOXRED1Q96CU9 486 aaPredicted RBP5.02□□□□□ -1.61
SCN1A-211ENST00000635893 SCLYQ96I15 445 aa5.02□□□□□ -1.61
SCN1A-211ENST00000635893 DENND2AQ9ULE3 1009 aa5.02□□□□□ -1.61
SCN1A-211ENST00000635893 C2orf78A6NCI8 922 aa5.01□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms