RNA–Protein interactions for RNA: ENST00000622166.1

IGHV3-54-201, Transcript of immunoglobulin heavy variable 3-54 (pseudogene), humanhuman

BASIC

Gene IGHV3-54, Length 353 nt, Biotype IG V pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
IGHV3-54-201ENST00000622166 SRRM3A6NNA2 597 aaPredicted RBP10.49□□□□□ -0.73
IGHV3-54-201ENST00000622166 KCNK3O14649 394 aa10.49□□□□□ -0.73
IGHV3-54-201ENST00000622166 CLIC2O15247 247 aa10.49□□□□□ -0.73
IGHV3-54-201ENST00000622166 EIF3HO15372 352 aaKnown RBP eCLIP10.49□□□□□ -0.73
IGHV3-54-201ENST00000622166 PPP1R12BO60237 982 aaPredicted RBP10.49□□□□□ -0.73
IGHV3-54-201ENST00000622166 TRIM37O94972 964 aa10.49□□□□□ -0.73
IGHV3-54-201ENST00000622166 FAM153BP0C7A2 387 aa10.49□□□□□ -0.73
IGHV3-54-201ENST00000622166 LMNB1P20700 586 aa10.49□□□□□ -0.73
IGHV3-54-201ENST00000622166 HOXA13P31271 388 aaPredicted RBP10.49□□□□□ -0.73
IGHV3-54-201ENST00000622166 SOX5P35711 763 aa10.49□□□□□ -0.73
IGHV3-54-201ENST00000622166 CORO7P57737 925 aa10.49□□□□□ -0.73
IGHV3-54-201ENST00000622166 CYP4A11Q02928 519 aa10.49□□□□□ -0.73
IGHV3-54-201ENST00000622166 IKQ13123 557 aaPredicted RBP10.49□□□□□ -0.73
IGHV3-54-201ENST00000622166 CUL1Q13616 776 aa10.49□□□□□ -0.73
IGHV3-54-201ENST00000622166 PPP2R5AQ15172 486 aa10.49□□□□□ -0.73
IGHV3-54-201ENST00000622166 FAM153CQ494X1 144 aa10.49□□□□□ -0.73
IGHV3-54-201ENST00000622166 DNAJC21Q5F1R6 531 aaKnown RBP10.49□□□□□ -0.73
IGHV3-54-201ENST00000622166 DCAF17Q5H9S7 520 aaPredicted RBP10.49□□□□□ -0.73
IGHV3-54-201ENST00000622166 B3GNT9Q6UX72 402 aa10.49□□□□□ -0.73
IGHV3-54-201ENST00000622166 KDM7AQ6ZMT4 941 aa10.49□□□□□ -0.73
IGHV3-54-201ENST00000622166 SLC9A9Q8IVB4 645 aa10.49□□□□□ -0.73
IGHV3-54-201ENST00000622166 FAM186BQ8IYM0 893 aa10.49□□□□□ -0.73
IGHV3-54-201ENST00000622166 METTL13Q8N6R0 699 aa10.49□□□□□ -0.73
IGHV3-54-201ENST00000622166 VTI1AQ96AJ9 217 aa10.49□□□□□ -0.73
IGHV3-54-201ENST00000622166 NACC1Q96RE7 527 aa10.49□□□□□ -0.73
IGHV3-54-201ENST00000622166 FIZ1Q96SL8 496 aa10.49□□□□□ -0.73
IGHV3-54-201ENST00000622166 HINFPQ9BQA5 517 aa10.49□□□□□ -0.73
IGHV3-54-201ENST00000622166 BUD13Q9BRD0 619 aaKnown RBP eCLIP10.49□□□□□ -0.73
IGHV3-54-201ENST00000622166 STRA6Q9BX79 667 aa10.49□□□□□ -0.73
IGHV3-54-201ENST00000622166 FAM107BQ9H098 131 aa10.49□□□□□ -0.73
IGHV3-54-201ENST00000622166 DEFB129Q9H1M3 183 aa10.49□□□□□ -0.73
IGHV3-54-201ENST00000622166 RASSF4Q9H2L5 321 aa10.49□□□□□ -0.73
IGHV3-54-201ENST00000622166 TAF1DQ9H5J8 278 aaPredicted RBP10.49□□□□□ -0.73
IGHV3-54-201ENST00000622166 SLITRK6Q9H5Y7 841 aa10.49□□□□□ -0.73
IGHV3-54-201ENST00000622166 RGL1Q9NZL6 768 aa10.49□□□□□ -0.73
IGHV3-54-201ENST00000622166 GCNT4Q9P109 453 aa10.49□□□□□ -0.73
IGHV3-54-201ENST00000622166 FAM153AQ9UHL3 310 aa10.49□□□□□ -0.73
IGHV3-54-201ENST00000622166 RSPH14Q9UHP6 348 aa10.49□□□□□ -0.73
IGHV3-54-201ENST00000622166 PACSIN2Q9UNF0 486 aaPredicted RBP10.49□□□□□ -0.73
IGHV3-54-201ENST00000622166 DIS3Q9Y2L1 958 aaKnown RBP10.49□□□□□ -0.73
IGHV3-54-201ENST00000622166 TMX2Q9Y320 296 aa10.49□□□□□ -0.73
IGHV3-54-201ENST00000622166 GRIN2DO15399 1336 aa10.49□□□□□ -0.73
IGHV3-54-201ENST00000622166 SHTN1A0MZ66 631 aa10.48□□□□□ -0.73
IGHV3-54-201ENST00000622166 GCOM1H8Y6P7 765 aaPredicted RBP10.48□□□□□ -0.73
IGHV3-54-201ENST00000622166 PGRMC1O00264 195 aaKnown RBP10.48□□□□□ -0.73
IGHV3-54-201ENST00000622166 CEP104O60308 925 aa10.48□□□□□ -0.73
IGHV3-54-201ENST00000622166 MMP10P09238 476 aa10.48□□□□□ -0.73
IGHV3-54-201ENST00000622166 TMEM253P0C7T8 217 aa10.48□□□□□ -0.73
IGHV3-54-201ENST00000622166 POLR2MP0CAP2 368 aa10.48□□□□□ -0.73
IGHV3-54-201ENST00000622166 GUCY2CP25092 1073 aa10.48□□□□□ -0.73
IGHV3-54-201ENST00000622166 POLD1P28340 1107 aa10.48□□□□□ -0.73
IGHV3-54-201ENST00000622166 NMT1P30419 496 aaKnown RBP10.48□□□□□ -0.73
IGHV3-54-201ENST00000622166 MAGEA9P43362 315 aa10.48□□□□□ -0.73
IGHV3-54-201ENST00000622166 NOP2P46087 812 aaKnown RBP10.48□□□□□ -0.73
IGHV3-54-201ENST00000622166 FMO5P49326 533 aa10.48□□□□□ -0.73
IGHV3-54-201ENST00000622166 GNGT1P63211 74 aa10.48□□□□□ -0.73
IGHV3-54-201ENST00000622166 PPATQ06203 517 aa10.48□□□□□ -0.73
IGHV3-54-201ENST00000622166 CTTNQ14247 550 aaKnown RBP10.48□□□□□ -0.73
IGHV3-54-201ENST00000622166 TCEAL1Q15170 157 aa10.48□□□□□ -0.73
IGHV3-54-201ENST00000622166 ENOX2Q16206 610 aaKnown RBP10.48□□□□□ -0.73
IGHV3-54-201ENST00000622166 LRCH2Q5VUJ6 765 aa10.48□□□□□ -0.73
IGHV3-54-201ENST00000622166 TCERG1LQ5VWI1 586 aa10.48□□□□□ -0.73
IGHV3-54-201ENST00000622166 CC2D2BQ6DHV5 1058 aa10.48□□□□□ -0.73
IGHV3-54-201ENST00000622166 ZNF720Q7Z2F6 126 aa10.48□□□□□ -0.73
IGHV3-54-201ENST00000622166 NT5DC3Q86UY8 548 aa10.48□□□□□ -0.73
IGHV3-54-201ENST00000622166 MYCT1Q8N699 235 aa10.48□□□□□ -0.73
IGHV3-54-201ENST00000622166 CYP2W1Q8TAV3 490 aa10.48□□□□□ -0.73
IGHV3-54-201ENST00000622166 LNX1Q8TBB1 728 aaPredicted RBP10.48□□□□□ -0.73
IGHV3-54-201ENST00000622166 NEK9Q8TD19 979 aa10.48□□□□□ -0.73
IGHV3-54-201ENST00000622166 U2AF1L4Q8WU68 220 aaKnown RBP10.48□□□□□ -0.73
IGHV3-54-201ENST00000622166 TMEM174Q8WUU8 243 aa10.48□□□□□ -0.73
IGHV3-54-201ENST00000622166 IFT81Q8WYA0 676 aa10.48□□□□□ -0.73
IGHV3-54-201ENST00000622166 HES6Q96HZ4 224 aa10.48□□□□□ -0.73
IGHV3-54-201ENST00000622166 TRERF1Q96PN7 1200 aa10.48□□□□□ -0.73
IGHV3-54-201ENST00000622166 WDR11Q9BZH6 1224 aa10.48□□□□□ -0.73
IGHV3-54-201ENST00000622166 RANBP17Q9H2T7 1088 aaKnown RBP10.48□□□□□ -0.73
IGHV3-54-201ENST00000622166 BCAS3Q9H6U6 928 aa10.48□□□□□ -0.73
IGHV3-54-201ENST00000622166 TDRD3Q9H7E2 651 aaKnown RBP10.48□□□□□ -0.73
IGHV3-54-201ENST00000622166 PARVGQ9HBI0 331 aa10.48□□□□□ -0.73
IGHV3-54-201ENST00000622166 ARHGEF10LQ9HCE6 1279 aa10.48□□□□□ -0.73
IGHV3-54-201ENST00000622166 MRPL11Q9Y3B7 192 aaKnown RBP10.48□□□□□ -0.73
IGHV3-54-201ENST00000622166 PCDHB13Q9Y5F0 798 aa10.48□□□□□ -0.73
IGHV3-54-201ENST00000622166 MYH11P35749 1972 aa10.47□□□□□ -0.73
IGHV3-54-201ENST00000622166 SMCHD1A6NHR9 2005 aa10.47□□□□□ -0.73
IGHV3-54-201ENST00000622166 ZSCAN5CA6NGD5 496 aaPredicted RBP10.47□□□□□ -0.73
IGHV3-54-201ENST00000622166 ZNF233A6NK53 670 aa10.47□□□□□ -0.73
IGHV3-54-201ENST00000622166 HMGB1P1B2RPK0 211 aaPredicted RBP10.47□□□□□ -0.73
IGHV3-54-201ENST00000622166 F8VZ95 297 aa10.47□□□□□ -0.73
IGHV3-54-201ENST00000622166 PLSCR1O15162 318 aa10.47□□□□□ -0.73
IGHV3-54-201ENST00000622166 EVI5O60447 810 aa10.47□□□□□ -0.73
IGHV3-54-201ENST00000622166 PPP1R37O75864 691 aa10.47□□□□□ -0.73
IGHV3-54-201ENST00000622166 VIL1P09327 827 aaKnown RBP10.47□□□□□ -0.73
IGHV3-54-201ENST00000622166 CCDC172P0C7W6 258 aa10.47□□□□□ -0.73
IGHV3-54-201ENST00000622166 MAPTP10636 758 aaKnown RBP10.47□□□□□ -0.73
IGHV3-54-201ENST00000622166 TAL1P17542 331 aaPredicted RBP10.47□□□□□ -0.73
IGHV3-54-201ENST00000622166 RFX1P22670 979 aa10.47□□□□□ -0.73
IGHV3-54-201ENST00000622166 ECHS1P30084 290 aa10.47□□□□□ -0.73
IGHV3-54-201ENST00000622166 STAT2P52630 851 aa10.47□□□□□ -0.73
IGHV3-54-201ENST00000622166 GALCP54803 685 aa10.47□□□□□ -0.73
IGHV3-54-201ENST00000622166 HADHBP55084 474 aaKnown RBP10.47□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms