RNA–Protein interactions for RNA: ENST00000620219.4

CPSF1-213, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,462 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-213ENST00000620219 PPM1KQ8N3J5 372 aa17.21■□□□□ 0.34
CPSF1-213ENST00000620219 SCFD1Q8WVM8 642 aa17.21■□□□□ 0.34
CPSF1-213ENST00000620219 SLC5A4Q9NY91 659 aa17.21■□□□□ 0.34
CPSF1-213ENST00000620219 AKT3Q9Y243 479 aa17.21■□□□□ 0.34
CPSF1-213ENST00000620219 PFASO15067 1338 aa17.2■□□□□ 0.34
CPSF1-213ENST00000620219 PLA2G6O60733 806 aa17.2■□□□□ 0.34
CPSF1-213ENST00000620219 SLU7O95391 586 aaKnown RBP17.2■□□□□ 0.34
CPSF1-213ENST00000620219 ELF2Q15723 593 aa17.2■□□□□ 0.34
CPSF1-213ENST00000620219 RAD9BQ6WBX8 426 aa17.2■□□□□ 0.34
CPSF1-213ENST00000620219 POLR3FQ9H1D9 316 aaPredicted RBP17.2■□□□□ 0.34
CPSF1-213ENST00000620219 BCAS3Q9H6U6 928 aa17.2■□□□□ 0.34
CPSF1-213ENST00000620219 TYW1Q9NV66 732 aaKnown RBP17.2■□□□□ 0.34
CPSF1-213ENST00000620219 GCNT4Q9P109 453 aa17.2■□□□□ 0.34
CPSF1-213ENST00000620219 K7ERI5 159 aa17.2■□□□□ 0.34
CPSF1-213ENST00000620219 GPRASP2Q96D09 838 aa17.2■□□□□ 0.34
CPSF1-213ENST00000620219 IKZF4Q9H2S9 585 aa17.2■□□□□ 0.34
CPSF1-213ENST00000620219 ATP6V0A4Q9HBG4 840 aa17.2■□□□□ 0.34
CPSF1-213ENST00000620219 ABHD10Q9NUJ1 306 aa17.2■□□□□ 0.34
CPSF1-213ENST00000620219 ZNF214Q9UL59 606 aaPredicted RBP17.2■□□□□ 0.34
CPSF1-213ENST00000620219 USP20Q9Y2K6 914 aa17.2■□□□□ 0.34
CPSF1-213ENST00000620219 SLC25A27O95847 323 aa17.2■□□□□ 0.34
CPSF1-213ENST00000620219 CYP2B6P20813 491 aa17.2■□□□□ 0.34
CPSF1-213ENST00000620219 HSD17B4P51659 736 aa17.2■□□□□ 0.34
CPSF1-213ENST00000620219 TTLL4Q14679 1199 aa17.2■□□□□ 0.34
CPSF1-213ENST00000620219 FAM133AQ8N9E0 248 aa17.2■□□□□ 0.34
CPSF1-213ENST00000620219 DUSP9Q99956 384 aaKnown RBP17.2■□□□□ 0.34
CPSF1-213ENST00000620219 IGLV3-22A0A075B6J6 115 aa17.19■□□□□ 0.34
CPSF1-213ENST00000620219 TRIM50Q86XT4 487 aa17.19■□□□□ 0.34
CPSF1-213ENST00000620219 ZC3H15Q8WU90 426 aaKnown RBP17.19■□□□□ 0.34
CPSF1-213ENST00000620219 JAKMIP2Q96AA8 810 aa17.19■□□□□ 0.34
CPSF1-213ENST00000620219 AGTPBP1Q9UPW5 1226 aa17.19■□□□□ 0.34
CPSF1-213ENST00000620219 SPDYE4A6NLX3 237 aa17.19■□□□□ 0.34
CPSF1-213ENST00000620219 GOLGA5Q8TBA6 731 aa17.19■□□□□ 0.34
CPSF1-213ENST00000620219 FAM49AQ9H0Q0 323 aaPredicted RBP17.19■□□□□ 0.34
CPSF1-213ENST00000620219 GCLMP48507 274 aa17.19■□□□□ 0.34
CPSF1-213ENST00000620219 SLC12A3P55017 1021 aa17.19■□□□□ 0.34
CPSF1-213ENST00000620219 CCDC70Q6NSX1 233 aa17.19■□□□□ 0.34
CPSF1-213ENST00000620219 TXLNBQ8N3L3 684 aa17.19■□□□□ 0.34
CPSF1-213ENST00000620219 LENG9Q96B70 501 aa17.19■□□□□ 0.34
CPSF1-213ENST00000620219 DNAJC19Q96DA6 116 aa17.19■□□□□ 0.34
CPSF1-213ENST00000620219 VAV3Q9UKW4 847 aa17.19■□□□□ 0.34
CPSF1-213ENST00000620219 CASP4P49662 377 aa17.19■□□□□ 0.34
CPSF1-213ENST00000620219 CCDC51Q96ER9 411 aa17.19■□□□□ 0.34
CPSF1-213ENST00000620219 IFIH1Q9BYX4 1025 aaKnown RBP17.19■□□□□ 0.34
CPSF1-213ENST00000620219 TMEM206Q9H813 350 aa17.19■□□□□ 0.34
CPSF1-213ENST00000620219 GPBP1L1Q9HC44 474 aaPredicted RBP17.19■□□□□ 0.34
CPSF1-213ENST00000620219 PITPNM2Q9BZ72 1349 aa17.18■□□□□ 0.34
CPSF1-213ENST00000620219 A0A0U1RQJ8 604 aa17.18■□□□□ 0.34
CPSF1-213ENST00000620219 GTF2A2P52657 109 aa17.18■□□□□ 0.34
CPSF1-213ENST00000620219 PPP2R5CQ13362 524 aa17.18■□□□□ 0.34
CPSF1-213ENST00000620219 LRRC71Q8N4P6 559 aa17.18■□□□□ 0.34
CPSF1-213ENST00000620219 ATRIPQ8WXE1 791 aa17.18■□□□□ 0.34
CPSF1-213ENST00000620219 IMPG2Q9BZV3 1241 aa17.18■□□□□ 0.34
CPSF1-213ENST00000620219 ECM29Q5VYK3 1845 aa17.18■□□□□ 0.34
CPSF1-213ENST00000620219 PPIL2Q13356 520 aa17.18■□□□□ 0.34
CPSF1-213ENST00000620219 CTAGE9A4FU28 777 aa17.18■□□□□ 0.34
CPSF1-213ENST00000620219 SPDYE5A6NIY4 337 aa17.18■□□□□ 0.34
CPSF1-213ENST00000620219 ENC1O14682 589 aa17.18■□□□□ 0.34
CPSF1-213ENST00000620219 KRT19P08727 400 aa17.18■□□□□ 0.34
CPSF1-213ENST00000620219 TCF7P36402 384 aaPredicted RBP17.18■□□□□ 0.34
CPSF1-213ENST00000620219 ALDH5A1P51649 535 aaPredicted RBP17.18■□□□□ 0.34
CPSF1-213ENST00000620219 ERCC6LQ2NKX8 1250 aa17.18■□□□□ 0.34
CPSF1-213ENST00000620219 ZBTB8OSQ8IWT0 167 aa17.18■□□□□ 0.34
CPSF1-213ENST00000620219 MCPH1Q8NEM0 835 aa17.18■□□□□ 0.34
CPSF1-213ENST00000620219 NAA15Q9BXJ9 866 aaKnown RBP17.18■□□□□ 0.34
CPSF1-213ENST00000620219 RNF225M0QZC1 329 aaPredicted RBP17.17■□□□□ 0.34
CPSF1-213ENST00000620219 PRPF4BQ13523 1007 aaKnown RBP17.17■□□□□ 0.34
CPSF1-213ENST00000620219 BRDTQ58F21 947 aaPredicted RBP17.17■□□□□ 0.34
CPSF1-213ENST00000620219 ODF2Q5BJF6 829 aa17.17■□□□□ 0.34
CPSF1-213ENST00000620219 GJC2Q5T442 439 aaPredicted RBP17.17■□□□□ 0.34
CPSF1-213ENST00000620219 CENPPQ6IPU0 288 aa17.17■□□□□ 0.34
CPSF1-213ENST00000620219 RHPN2Q8IUC4 686 aa17.17■□□□□ 0.34
CPSF1-213ENST00000620219 SEPT1Q8WYJ6 367 aa17.17■□□□□ 0.34
CPSF1-213ENST00000620219 TAF4BQ92750 862 aa17.17■□□□□ 0.34
CPSF1-213ENST00000620219 ALS2CR12Q96Q35 445 aa17.17■□□□□ 0.34
CPSF1-213ENST00000620219 WDR24Q96S15 920 aa17.17■□□□□ 0.34
CPSF1-213ENST00000620219 ACTN1P12814 892 aa17.17■□□□□ 0.34
CPSF1-213ENST00000620219 RARRES1P49788 294 aa17.17■□□□□ 0.34
CPSF1-213ENST00000620219 OAZ1P54368 228 aa17.17■□□□□ 0.34
CPSF1-213ENST00000620219 MYL7Q01449 175 aa17.17■□□□□ 0.34
CPSF1-213ENST00000620219 LMBRD2Q68DH5 695 aaPredicted RBP17.17■□□□□ 0.34
CPSF1-213ENST00000620219 ILDR2Q71H61 639 aa17.17■□□□□ 0.34
CPSF1-213ENST00000620219 IRF2BP1Q8IU81 584 aa17.17■□□□□ 0.34
CPSF1-213ENST00000620219 PROCA1Q8NCQ7 364 aaPredicted RBP17.17■□□□□ 0.34
CPSF1-213ENST00000620219 HSD17B14Q9BPX1 270 aa17.17■□□□□ 0.34
CPSF1-213ENST00000620219 UBIAD1Q9Y5Z9 338 aa17.17■□□□□ 0.34
CPSF1-213ENST00000620219 EDIL3O43854 480 aa17.17■□□□□ 0.34
CPSF1-213ENST00000620219 ERVK-9P63128 1117 aa17.17■□□□□ 0.34
CPSF1-213ENST00000620219 ERVK-24P63145 666 aa17.17■□□□□ 0.34
CPSF1-213ENST00000620219 ZBED6P86452 979 aa17.17■□□□□ 0.34
CPSF1-213ENST00000620219 APBA1Q02410 837 aa17.17■□□□□ 0.34
CPSF1-213ENST00000620219 ARSHQ5FYA8 562 aa17.17■□□□□ 0.34
CPSF1-213ENST00000620219 XKR3Q5GH77 459 aa17.17■□□□□ 0.34
CPSF1-213ENST00000620219 PPP4R3CPQ6ZMV5 832 aa17.17■□□□□ 0.34
CPSF1-213ENST00000620219 PPP1R13LQ8WUF5 828 aa17.17■□□□□ 0.34
CPSF1-213ENST00000620219 MAP3K20Q9NYL2 800 aaKnown RBP17.17■□□□□ 0.34
CPSF1-213ENST00000620219 MYH4Q9Y623 1939 aa17.17■□□□□ 0.34
CPSF1-213ENST00000620219 MAFGO15525 162 aa17.17■□□□□ 0.34
CPSF1-213ENST00000620219 RNASE9P60153 205 aaKnown RBP17.17■□□□□ 0.34
CPSF1-213ENST00000620219 UGCGQ16739 394 aa17.17■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 65.6 ms