RNA–Protein interactions for RNA: ENST00000615540.4

PDLIM5-222, Transcript of PDZ and LIM domain 5, humanhuman

TSL 1 (best) BASIC

Gene PDLIM5, Length 6,219 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5-222ENST00000615540 ZCCHC17Q9NP64 241 aaKnown RBP9.66□□□□□ -0.86
PDLIM5-222ENST00000615540 NYAP2Q9P242 653 aa9.66□□□□□ -0.86
PDLIM5-222ENST00000615540 ATP2A2P16615 1042 aaKnown RBP9.66□□□□□ -0.86
PDLIM5-222ENST00000615540 EPHB4P54760 987 aa9.66□□□□□ -0.86
PDLIM5-222ENST00000615540 KCTD19Q17RG1 926 aaPredicted RBP9.66□□□□□ -0.86
PDLIM5-222ENST00000615540 SUPT20HL1Q3ZLR7 823 aa9.66□□□□□ -0.86
PDLIM5-222ENST00000615540 STYK1Q6J9G0 422 aa9.66□□□□□ -0.86
PDLIM5-222ENST00000615540 DPY19L2Q6NUT2 758 aa9.66□□□□□ -0.86
PDLIM5-222ENST00000615540 RFX6Q8HWS3 928 aa9.66□□□□□ -0.86
PDLIM5-222ENST00000615540 CCDC13Q8IYE1 715 aa9.66□□□□□ -0.86
PDLIM5-222ENST00000615540 FBXL16Q8N461 479 aa9.66□□□□□ -0.86
PDLIM5-222ENST00000615540 OTUD5Q96G74 571 aa9.66□□□□□ -0.86
PDLIM5-222ENST00000615540 ANKRD36BP1Q96IX9 119 aa9.66□□□□□ -0.86
PDLIM5-222ENST00000615540 ZNF302Q9NR11 478 aa9.66□□□□□ -0.86
PDLIM5-222ENST00000615540 FBXO28Q9NVF7 368 aa9.66□□□□□ -0.86
PDLIM5-222ENST00000615540 CHORDC1Q9UHD1 332 aaPredicted RBP9.66□□□□□ -0.86
PDLIM5-222ENST00000615540 EMSYQ7Z589 1322 aa9.66□□□□□ -0.86
PDLIM5-222ENST00000615540 A0A0U1RQJ8 604 aa9.66□□□□□ -0.86
PDLIM5-222ENST00000615540 ORC2Q13416 577 aaPredicted RBP9.66□□□□□ -0.86
PDLIM5-222ENST00000615540 SEMA6BQ9H3T3 888 aa9.66□□□□□ -0.86
PDLIM5-222ENST00000615540 MYOZ2Q9NPC6 264 aa9.66□□□□□ -0.86
PDLIM5-222ENST00000615540 EHD2Q9NZN4 543 aa9.66□□□□□ -0.86
PDLIM5-222ENST00000615540 A0A1W2PQC6 194 aa9.66□□□□□ -0.86
PDLIM5-222ENST00000615540 MSH4O15457 936 aa9.66□□□□□ -0.86
PDLIM5-222ENST00000615540 EYA4O95677 639 aa9.66□□□□□ -0.86
PDLIM5-222ENST00000615540 KRT1P04264 644 aa9.66□□□□□ -0.86
PDLIM5-222ENST00000615540 SHMT1P34896 483 aa9.66□□□□□ -0.86
PDLIM5-222ENST00000615540 FXR2P51116 673 aaKnown RBP eCLIP9.66□□□□□ -0.86
PDLIM5-222ENST00000615540 MKRN4PQ13434 485 aaPredicted RBP9.66□□□□□ -0.86
PDLIM5-222ENST00000615540 NYAP1Q6ZVC0 841 aa9.66□□□□□ -0.86
PDLIM5-222ENST00000615540 IL17RAQ96F46 866 aa9.66□□□□□ -0.86
PDLIM5-222ENST00000615540 KIFC3Q9BVG8 833 aa9.66□□□□□ -0.86
PDLIM5-222ENST00000615540 ZNRF3Q9ULT6 936 aa9.66□□□□□ -0.86
PDLIM5-222ENST00000615540 ITIH6Q6UXX5 1313 aa9.66□□□□□ -0.86
PDLIM5-222ENST00000615540 APBA1Q02410 837 aa9.66□□□□□ -0.86
PDLIM5-222ENST00000615540 SHROOM1Q2M3G4 852 aaPredicted RBP9.66□□□□□ -0.86
PDLIM5-222ENST00000615540 GLYCTKQ8IVS8 523 aa9.66□□□□□ -0.86
PDLIM5-222ENST00000615540 TSNARE1Q96NA8 513 aa9.66□□□□□ -0.86
PDLIM5-222ENST00000615540 ZWILCHQ9H900 591 aa9.66□□□□□ -0.86
PDLIM5-222ENST00000615540 TTLL3Q9Y4R7 772 aa9.66□□□□□ -0.86
PDLIM5-222ENST00000615540 SGK1O00141 431 aa9.65□□□□□ -0.86
PDLIM5-222ENST00000615540 P4HBP07237 508 aaKnown RBP9.65□□□□□ -0.86
PDLIM5-222ENST00000615540 MDM2Q00987 491 aaPredicted RBP9.65□□□□□ -0.86
PDLIM5-222ENST00000615540 SGO2Q562F6 1265 aa9.65□□□□□ -0.86
PDLIM5-222ENST00000615540 RUFY4Q6ZNE9 571 aa9.65□□□□□ -0.86
PDLIM5-222ENST00000615540 APBB1IPQ7Z5R6 666 aaPredicted RBP9.65□□□□□ -0.86
PDLIM5-222ENST00000615540 ARFGAP2Q8N6H7 521 aa9.65□□□□□ -0.86
PDLIM5-222ENST00000615540 MTRQ99707 1265 aa9.65□□□□□ -0.86
PDLIM5-222ENST00000615540 ELP3Q9H9T3 547 aa9.65□□□□□ -0.86
PDLIM5-222ENST00000615540 FHOD1Q9Y613 1164 aa9.65□□□□□ -0.86
PDLIM5-222ENST00000615540 EIF3CLB5ME19 914 aaKnown RBP9.65□□□□□ -0.86
PDLIM5-222ENST00000615540 CYTH3O43739 400 aa9.65□□□□□ -0.86
PDLIM5-222ENST00000615540 QARSP47897 775 aaKnown RBP9.65□□□□□ -0.86
PDLIM5-222ENST00000615540 DR1Q01658 176 aa9.65□□□□□ -0.86
PDLIM5-222ENST00000615540 ZKSCAN4Q969J2 545 aaPredicted RBP9.65□□□□□ -0.86
PDLIM5-222ENST00000615540 EIF3CQ99613 913 aaKnown RBP9.65□□□□□ -0.86
PDLIM5-222ENST00000615540 GOLPH3Q9H4A6 298 aa9.65□□□□□ -0.86
PDLIM5-222ENST00000615540 HERC5Q9UII4 1024 aaKnown RBP9.65□□□□□ -0.86
PDLIM5-222ENST00000615540 NOD1Q9Y239 953 aa9.65□□□□□ -0.86
PDLIM5-222ENST00000615540 KRT15P19012 456 aa9.65□□□□□ -0.86
PDLIM5-222ENST00000615540 SLC9A1P19634 815 aa9.65□□□□□ -0.86
PDLIM5-222ENST00000615540 BRDTQ58F21 947 aaPredicted RBP9.65□□□□□ -0.86
PDLIM5-222ENST00000615540 CEP57Q86XR8 500 aa9.65□□□□□ -0.86
PDLIM5-222ENST00000615540 ELMO3Q96BJ8 720 aa9.65□□□□□ -0.86
PDLIM5-222ENST00000615540 MAGED2Q9UNF1 606 aaPredicted RBP9.65□□□□□ -0.86
PDLIM5-222ENST00000615540 ATRNO75882 1429 aa9.65□□□□□ -0.86
PDLIM5-222ENST00000615540 WDR64B1ANS9 1081 aa9.65□□□□□ -0.87
PDLIM5-222ENST00000615540 CCT5P48643 541 aa9.65□□□□□ -0.87
PDLIM5-222ENST00000615540 NT5C2P49902 561 aa9.65□□□□□ -0.87
PDLIM5-222ENST00000615540 NNTQ13423 1086 aa9.65□□□□□ -0.87
PDLIM5-222ENST00000615540 R3HDM1Q15032 1099 aaKnown RBP9.65□□□□□ -0.87
PDLIM5-222ENST00000615540 CASC4Q6P4E1 433 aa9.65□□□□□ -0.87
PDLIM5-222ENST00000615540 THNSL1Q8IYQ7 743 aa9.65□□□□□ -0.87
PDLIM5-222ENST00000615540 HEMGNQ9BXL5 484 aa9.65□□□□□ -0.87
PDLIM5-222ENST00000615540 CNOT7Q9UIV1 285 aaKnown RBP9.65□□□□□ -0.87
PDLIM5-222ENST00000615540 H0YCG3 227 aa9.64□□□□□ -0.87
PDLIM5-222ENST00000615540 ATP5DP30049 168 aa9.64□□□□□ -0.87
PDLIM5-222ENST00000615540 VSNL1P62760 191 aa9.64□□□□□ -0.87
PDLIM5-222ENST00000615540 DHX9Q08211 1270 aaKnown RBP9.64□□□□□ -0.87
PDLIM5-222ENST00000615540 PBKQ96KB5 322 aa9.64□□□□□ -0.87
PDLIM5-222ENST00000615540 PLAAQ9Y263 795 aa9.64□□□□□ -0.87
PDLIM5-222ENST00000615540 DUSP10Q9Y6W6 482 aa9.64□□□□□ -0.87
PDLIM5-222ENST00000615540 P4HA1P13674 534 aa9.64□□□□□ -0.87
PDLIM5-222ENST00000615540 TFDP1Q14186 410 aa9.64□□□□□ -0.87
PDLIM5-222ENST00000615540 CEP55Q53EZ4 464 aa9.64□□□□□ -0.87
PDLIM5-222ENST00000615540 ANGEL2Q5VTE6 544 aaKnown RBP9.64□□□□□ -0.87
PDLIM5-222ENST00000615540 TAOK1Q7L7X3 1001 aa9.64□□□□□ -0.87
PDLIM5-222ENST00000615540 RHPN2Q8IUC4 686 aa9.64□□□□□ -0.87
PDLIM5-222ENST00000615540 NUP85Q9BW27 656 aa9.64□□□□□ -0.87
PDLIM5-222ENST00000615540 TADA3O75528 432 aa9.64□□□□□ -0.87
PDLIM5-222ENST00000615540 STXBP2Q15833 593 aa9.64□□□□□ -0.87
PDLIM5-222ENST00000615540 PRPF38AQ8NAV1 312 aaKnown RBP9.64□□□□□ -0.87
PDLIM5-222ENST00000615540 SLC17A8Q8NDX2 589 aa9.64□□□□□ -0.87
PDLIM5-222ENST00000615540 IPO4Q8TEX9 1081 aaKnown RBP9.64□□□□□ -0.87
PDLIM5-222ENST00000615540 HSPH1Q92598 858 aa9.64□□□□□ -0.87
PDLIM5-222ENST00000615540 TMEM143Q96AN5 459 aa9.64□□□□□ -0.87
PDLIM5-222ENST00000615540 TAAR1Q96RJ0 339 aa9.64□□□□□ -0.87
PDLIM5-222ENST00000615540 PARP2Q9UGN5 583 aa9.64□□□□□ -0.87
PDLIM5-222ENST00000615540 TBK1Q9UHD2 729 aa9.64□□□□□ -0.87
PDLIM5-222ENST00000615540 HACL1Q9UJ83 578 aa9.64□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms