RNA–Protein interactions for RNA: ENST00000614932.1

VPS39-214, Transcript of VPS39, HOPS complex subunit, humanhuman

Gene VPS39, Length 2,835 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-214ENST00000614932 HOXD11P31277 338 aaPredicted RBP11.06□□□□□ -0.64
VPS39-214ENST00000614932 KRT9P35527 623 aa11.06□□□□□ -0.64
VPS39-214ENST00000614932 MTTPP55157 894 aa11.06□□□□□ -0.64
VPS39-214ENST00000614932 HERVK_113P62684 666 aa11.06□□□□□ -0.64
VPS39-214ENST00000614932 KRT83P78385 493 aa11.06□□□□□ -0.64
VPS39-214ENST00000614932 GPSM2P81274 684 aa11.06□□□□□ -0.64
VPS39-214ENST00000614932 BNIP1Q12981 228 aa11.06□□□□□ -0.64
VPS39-214ENST00000614932 KLC3Q6P597 504 aa11.06□□□□□ -0.64
VPS39-214ENST00000614932 ASRGL1Q7L266 308 aa11.06□□□□□ -0.64
VPS39-214ENST00000614932 SGMS1Q86VZ5 419 aa11.06□□□□□ -0.64
VPS39-214ENST00000614932 FANCBQ8NB91 859 aa11.06□□□□□ -0.64
VPS39-214ENST00000614932 CLIP3Q96DZ5 547 aa11.06□□□□□ -0.64
VPS39-214ENST00000614932 RAB3IPQ96QF0 476 aaPredicted RBP11.06□□□□□ -0.64
VPS39-214ENST00000614932 CHP1Q99653 195 aa11.06□□□□□ -0.64
VPS39-214ENST00000614932 MAN1B1Q9UKM7 699 aa11.06□□□□□ -0.64
VPS39-214ENST00000614932 PNPLA7Q6ZV29 1317 aa11.06□□□□□ -0.64
VPS39-214ENST00000614932 CNTNAP4Q9C0A0 1308 aa11.06□□□□□ -0.64
VPS39-214ENST00000614932 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP11.05□□□□□ -0.64
VPS39-214ENST00000614932 MMEP08473 750 aa11.05□□□□□ -0.64
VPS39-214ENST00000614932 USP17L8P0C7I0 530 aa11.05□□□□□ -0.64
VPS39-214ENST00000614932 SPATA31D3P0C874 917 aa11.05□□□□□ -0.64
VPS39-214ENST00000614932 PRLRP16471 622 aa11.05□□□□□ -0.64
VPS39-214ENST00000614932 LIFRP42702 1097 aa11.05□□□□□ -0.64
VPS39-214ENST00000614932 HPCAP84074 193 aa11.05□□□□□ -0.64
VPS39-214ENST00000614932 ITGA7Q13683 1181 aa11.05□□□□□ -0.64
VPS39-214ENST00000614932 TRIM14Q14142 442 aa11.05□□□□□ -0.64
VPS39-214ENST00000614932 KRT72Q14CN4 511 aa11.05□□□□□ -0.64
VPS39-214ENST00000614932 ZNF394Q53GI3 561 aa11.05□□□□□ -0.64
VPS39-214ENST00000614932 GRAMD4Q6IC98 578 aa11.05□□□□□ -0.64
VPS39-214ENST00000614932 SPATA31D4Q6ZUB0 917 aa11.05□□□□□ -0.64
VPS39-214ENST00000614932 ENAHQ8N8S7 591 aaPredicted RBP11.05□□□□□ -0.64
VPS39-214ENST00000614932 HAUS1Q96CS2 278 aa11.05□□□□□ -0.64
VPS39-214ENST00000614932 DHTKD1Q96HY7 919 aaPredicted RBP11.05□□□□□ -0.64
VPS39-214ENST00000614932 AGBL1Q96MI9 1066 aa11.05□□□□□ -0.64
VPS39-214ENST00000614932 NYXQ9GZU5 481 aa11.05□□□□□ -0.64
VPS39-214ENST00000614932 EPB41L5Q9HCM4 733 aa11.05□□□□□ -0.64
VPS39-214ENST00000614932 CYP39A1Q9NYL5 469 aa11.05□□□□□ -0.64
VPS39-214ENST00000614932 STK24Q9Y6E0 443 aa11.05□□□□□ -0.64
VPS39-214ENST00000614932 FAM237AA0A1B0GTK4 181 aa11.05□□□□□ -0.64
VPS39-214ENST00000614932 RGL2O15211 777 aa11.05□□□□□ -0.64
VPS39-214ENST00000614932 FOXN1O15353 648 aa11.05□□□□□ -0.64
VPS39-214ENST00000614932 LDHAP00338 332 aaKnown RBP11.05□□□□□ -0.64
VPS39-214ENST00000614932 SKIP12755 728 aa11.05□□□□□ -0.64
VPS39-214ENST00000614932 TM4SF1P30408 202 aa11.05□□□□□ -0.64
VPS39-214ENST00000614932 PTDSS1P48651 473 aaKnown RBP11.05□□□□□ -0.64
VPS39-214ENST00000614932 RCN2Q14257 317 aa11.05□□□□□ -0.64
VPS39-214ENST00000614932 RCN1Q15293 331 aa11.05□□□□□ -0.64
VPS39-214ENST00000614932 SHC4Q6S5L8 630 aa11.05□□□□□ -0.64
VPS39-214ENST00000614932 FBXO33Q7Z6M2 555 aa11.05□□□□□ -0.64
VPS39-214ENST00000614932 WDR19Q8NEZ3 1342 aa11.05□□□□□ -0.64
VPS39-214ENST00000614932 IRGQQ8WZA9 623 aa11.05□□□□□ -0.64
VPS39-214ENST00000614932 ESR2Q92731 530 aa11.05□□□□□ -0.64
VPS39-214ENST00000614932 DYNLL2Q96FJ2 89 aa11.05□□□□□ -0.64
VPS39-214ENST00000614932 PBKQ96KB5 322 aa11.05□□□□□ -0.64
VPS39-214ENST00000614932 MED15Q96RN5 788 aa11.05□□□□□ -0.64
VPS39-214ENST00000614932 ELAC2Q9BQ52 826 aaKnown RBP11.05□□□□□ -0.64
VPS39-214ENST00000614932 PFDN4Q9NQP4 134 aa11.05□□□□□ -0.64
VPS39-214ENST00000614932 NOVA2Q9UNW9 492 aaKnown RBP11.05□□□□□ -0.64
VPS39-214ENST00000614932 UTRNP46939 3433 aa11.05□□□□□ -0.64
VPS39-214ENST00000614932 RTL9Q8NET4 1388 aa11.04□□□□□ -0.64
VPS39-214ENST00000614932 BIRC5O15392 142 aa11.04□□□□□ -0.64
VPS39-214ENST00000614932 PEX11AO75192 247 aa11.04□□□□□ -0.64
VPS39-214ENST00000614932 TJP3O95049 919 aa11.04□□□□□ -0.64
VPS39-214ENST00000614932 GLI1P08151 1106 aa11.04□□□□□ -0.64
VPS39-214ENST00000614932 PDGFRBP09619 1106 aa11.04□□□□□ -0.64
VPS39-214ENST00000614932 ERCC5P28715 1186 aaPredicted RBP11.04□□□□□ -0.64
VPS39-214ENST00000614932 USP11P51784 963 aa11.04□□□□□ -0.64
VPS39-214ENST00000614932 IFIT1BQ5T764 474 aaKnown RBP11.04□□□□□ -0.64
VPS39-214ENST00000614932 PALB2Q86YC2 1186 aa11.04□□□□□ -0.64
VPS39-214ENST00000614932 MAP7D3Q8IWC1 876 aa11.04□□□□□ -0.64
VPS39-214ENST00000614932 PEX5LQ8IYB4 626 aa11.04□□□□□ -0.64
VPS39-214ENST00000614932 SEPT12Q8IYM1 358 aa11.04□□□□□ -0.64
VPS39-214ENST00000614932 TRIM22Q8IYM9 498 aa11.04□□□□□ -0.64
VPS39-214ENST00000614932 ZNF333Q96JL9 665 aa11.04□□□□□ -0.64
VPS39-214ENST00000614932 SIKE1Q9BRV8 207 aa11.04□□□□□ -0.64
VPS39-214ENST00000614932 CCDC28BQ9BUN5 200 aa11.04□□□□□ -0.64
VPS39-214ENST00000614932 OSBPL10Q9BXB5 764 aa11.04□□□□□ -0.64
VPS39-214ENST00000614932 CABP5Q9NP86 173 aa11.04□□□□□ -0.64
VPS39-214ENST00000614932 MCM9Q9NXL9 1143 aa11.04□□□□□ -0.64
VPS39-214ENST00000614932 LARSQ9P2J5 1176 aaKnown RBP11.04□□□□□ -0.64
VPS39-214ENST00000614932 N6AMT1Q9Y5N5 214 aa11.04□□□□□ -0.64
VPS39-214ENST00000614932 V9GY48 417 aaPredicted RBP11.04□□□□□ -0.64
VPS39-214ENST00000614932 CICQ96RK0 1608 aaPredicted RBP11.04□□□□□ -0.64
VPS39-214ENST00000614932 BAZ2AQ9UIF9 1905 aaKnown RBP11.04□□□□□ -0.64
VPS39-214ENST00000614932 H0YGN5 161 aa11.04□□□□□ -0.64
VPS39-214ENST00000614932 WDR46O15213 610 aaKnown RBP11.04□□□□□ -0.64
VPS39-214ENST00000614932 VEGFAP15692 232 aaPredicted RBP11.04□□□□□ -0.64
VPS39-214ENST00000614932 PAFAH1B1P43034 410 aa11.04□□□□□ -0.64
VPS39-214ENST00000614932 PLCD1P51178 756 aa11.04□□□□□ -0.64
VPS39-214ENST00000614932 ARPC4P59998 168 aa11.04□□□□□ -0.64
VPS39-214ENST00000614932 MAGOHP61326 146 aaKnown RBP11.04□□□□□ -0.64
VPS39-214ENST00000614932 ZNF844Q08AG5 666 aa11.04□□□□□ -0.64
VPS39-214ENST00000614932 SLC39A14Q15043 492 aa11.04□□□□□ -0.64
VPS39-214ENST00000614932 OLFML2BQ68BL8 750 aa11.04□□□□□ -0.64
VPS39-214ENST00000614932 PACS1Q6VY07 963 aa11.04□□□□□ -0.64
VPS39-214ENST00000614932 CRACR2BQ8N4Y2 399 aaPredicted RBP11.04□□□□□ -0.64
VPS39-214ENST00000614932 ENDOVQ8N8Q3 282 aaKnown RBP11.04□□□□□ -0.64
VPS39-214ENST00000614932 PIGOQ8TEQ8 1089 aa11.04□□□□□ -0.64
VPS39-214ENST00000614932 TAF4BQ92750 862 aa11.04□□□□□ -0.64
VPS39-214ENST00000614932 MAGOHBQ96A72 148 aaKnown RBP11.04□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms