RNA–Protein interactions for RNA: ENST00000614678.1

CPNE3-208, Transcript of copine 3, humanhuman

TSL 1 (best)

Gene CPNE3, Length 4,201 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE3-208ENST00000614678 CATSPER3Q86XQ3 398 aa6.41□□□□□ -1.38
CPNE3-208ENST00000614678 CAGE1Q8TC20 777 aa6.41□□□□□ -1.38
CPNE3-208ENST00000614678 TIFAQ96CG3 184 aa6.41□□□□□ -1.38
CPNE3-208ENST00000614678 ZSCAN31Q96LW9 406 aaPredicted RBP6.41□□□□□ -1.38
CPNE3-208ENST00000614678 RIT2Q99578 217 aa6.41□□□□□ -1.38
CPNE3-208ENST00000614678 GLT8D2Q9H1C3 349 aa6.41□□□□□ -1.38
CPNE3-208ENST00000614678 XPNPEP1Q9NQW7 623 aa6.41□□□□□ -1.38
CPNE3-208ENST00000614678 SH2B1Q9NRF2 756 aaPredicted RBP6.41□□□□□ -1.38
CPNE3-208ENST00000614678 PTPN11Q06124 597 aaPredicted RBP6.4□□□□□ -1.38
CPNE3-208ENST00000614678 TRIM29Q14134 588 aa6.4□□□□□ -1.38
CPNE3-208ENST00000614678 PAN2Q504Q3 1202 aaKnown RBP6.4□□□□□ -1.38
CPNE3-208ENST00000614678 TTC38Q5R3I4 469 aa6.4□□□□□ -1.38
CPNE3-208ENST00000614678 FAM102BQ5T8I3 360 aa6.4□□□□□ -1.38
CPNE3-208ENST00000614678 LARP1BQ659C4 914 aaKnown RBP6.4□□□□□ -1.38
CPNE3-208ENST00000614678 FAM228AQ86W67 206 aa6.4□□□□□ -1.38
CPNE3-208ENST00000614678 LINC01465Q8N7H1 131 aa6.4□□□□□ -1.38
CPNE3-208ENST00000614678 ARNTL2Q8WYA1 636 aa6.4□□□□□ -1.38
CPNE3-208ENST00000614678 KIFC3Q9BVG8 833 aa6.4□□□□□ -1.38
CPNE3-208ENST00000614678 PCDHA12Q9UN75 941 aa6.4□□□□□ -1.38
CPNE3-208ENST00000614678 AKT3Q9Y243 479 aa6.4□□□□□ -1.38
CPNE3-208ENST00000614678 CLIC4Q9Y696 253 aa6.4□□□□□ -1.38
CPNE3-208ENST00000614678 A0A087WZ62 844 aa6.4□□□□□ -1.38
CPNE3-208ENST00000614678 HSFX4A0A1B0GTS1 333 aaPredicted RBP6.4□□□□□ -1.38
CPNE3-208ENST00000614678 HSFX3A0A1B0GWH4 333 aaPredicted RBP6.4□□□□□ -1.38
CPNE3-208ENST00000614678 CAPN2P17655 700 aa6.4□□□□□ -1.38
CPNE3-208ENST00000614678 SYT1P21579 422 aa6.4□□□□□ -1.38
CPNE3-208ENST00000614678 MRPS6P82932 125 aaKnown RBP6.4□□□□□ -1.38
CPNE3-208ENST00000614678 CACNB1Q02641 598 aaPredicted RBP6.4□□□□□ -1.38
CPNE3-208ENST00000614678 PPP2R5CQ13362 524 aa6.4□□□□□ -1.38
CPNE3-208ENST00000614678 CUL4AQ13619 759 aa6.4□□□□□ -1.38
CPNE3-208ENST00000614678 HERC6Q8IVU3 1022 aa6.4□□□□□ -1.38
CPNE3-208ENST00000614678 MICALL1Q8N3F8 863 aa6.4□□□□□ -1.38
CPNE3-208ENST00000614678 GDPD5Q8WTR4 605 aa6.4□□□□□ -1.38
CPNE3-208ENST00000614678 HSD17B14Q9BPX1 270 aa6.4□□□□□ -1.38
CPNE3-208ENST00000614678 FDXACB1Q9BRP7 624 aaPredicted RBP6.4□□□□□ -1.38
CPNE3-208ENST00000614678 LLPHQ9BRT6 129 aaKnown RBP6.4□□□□□ -1.38
CPNE3-208ENST00000614678 MMTAG2Q9BU76 263 aaKnown RBP6.4□□□□□ -1.38
CPNE3-208ENST00000614678 DAXXQ9UER7 740 aaPredicted RBP6.4□□□□□ -1.38
CPNE3-208ENST00000614678 SMC3Q9UQE7 1217 aa6.4□□□□□ -1.38
CPNE3-208ENST00000614678 PCDHA2Q9Y5H9 948 aa6.4□□□□□ -1.38
CPNE3-208ENST00000614678 WDR87Q6ZQQ6 2873 aa6.4□□□□□ -1.38
CPNE3-208ENST00000614678 MARCH6O60337 910 aa6.4□□□□□ -1.39
CPNE3-208ENST00000614678 HBP1O60381 514 aa6.4□□□□□ -1.39
CPNE3-208ENST00000614678 FGFR1P11362 822 aa6.4□□□□□ -1.39
CPNE3-208ENST00000614678 XBP1P17861 261 aa6.4□□□□□ -1.39
CPNE3-208ENST00000614678 TAP1Q03518 808 aa6.4□□□□□ -1.39
CPNE3-208ENST00000614678 RBL2Q08999 1139 aa6.4□□□□□ -1.39
CPNE3-208ENST00000614678 PSRC1Q6PGN9 363 aaPredicted RBP6.4□□□□□ -1.39
CPNE3-208ENST00000614678 RHPN2Q8IUC4 686 aa6.4□□□□□ -1.39
CPNE3-208ENST00000614678 WASF1Q92558 559 aa6.4□□□□□ -1.39
CPNE3-208ENST00000614678 NLRP4Q96MN2 994 aa6.4□□□□□ -1.39
CPNE3-208ENST00000614678 ADAMTS10Q9H324 1103 aa6.4□□□□□ -1.39
CPNE3-208ENST00000614678 CACNG4Q9UBN1 327 aa6.4□□□□□ -1.39
CPNE3-208ENST00000614678 TCEAL9Q9UHQ7 104 aa6.4□□□□□ -1.39
CPNE3-208ENST00000614678 NCOR1O75376 2440 aa6.4□□□□□ -1.39
CPNE3-208ENST00000614678 ARID2Q68CP9 1835 aa6.4□□□□□ -1.39
CPNE3-208ENST00000614678 E9PMD0 336 aa6.39□□□□□ -1.39
CPNE3-208ENST00000614678 ENPP3O14638 875 aa6.39□□□□□ -1.39
CPNE3-208ENST00000614678 LINC00271P0C7V0 271 aa6.39□□□□□ -1.39
CPNE3-208ENST00000614678 YWHABP31946 246 aaKnown RBP6.39□□□□□ -1.39
CPNE3-208ENST00000614678 TBC1D8BQ0IIM8 1120 aa6.39□□□□□ -1.39
CPNE3-208ENST00000614678 GALNT17Q6IS24 598 aa6.39□□□□□ -1.39
CPNE3-208ENST00000614678 SMAP1Q8IYB5 467 aaPredicted RBP6.39□□□□□ -1.39
CPNE3-208ENST00000614678 BBXQ8WY36 941 aaPredicted RBP6.39□□□□□ -1.39
CPNE3-208ENST00000614678 BSNDQ8WZ55 320 aa6.39□□□□□ -1.39
CPNE3-208ENST00000614678 LPPQ93052 612 aa6.39□□□□□ -1.39
CPNE3-208ENST00000614678 CLIC6Q96NY7 704 aa6.39□□□□□ -1.39
CPNE3-208ENST00000614678 CELF4Q9BZC1 486 aaKnown RBP6.39□□□□□ -1.39
CPNE3-208ENST00000614678 NPHP3-ACAD11A0A0J9YXS1 232 aa6.39□□□□□ -1.39
CPNE3-208ENST00000614678 SFI1A8K8P3 1242 aa6.39□□□□□ -1.39
CPNE3-208ENST00000614678 B4GALT3O60512 393 aa6.39□□□□□ -1.39
CPNE3-208ENST00000614678 LPXNO60711 386 aa6.39□□□□□ -1.39
CPNE3-208ENST00000614678 SRGAP2CP0DJJ0 459 aa6.39□□□□□ -1.39
CPNE3-208ENST00000614678 MARCKSP29966 332 aaPredicted RBP6.39□□□□□ -1.39
CPNE3-208ENST00000614678 GNL2Q13823 731 aaKnown RBP6.39□□□□□ -1.39
CPNE3-208ENST00000614678 CEP170P1Q96L14 293 aa6.39□□□□□ -1.39
CPNE3-208ENST00000614678 IKZF4Q9H2S9 585 aa6.39□□□□□ -1.39
CPNE3-208ENST00000614678 FOXP1Q9H334 677 aaPredicted RBP6.39□□□□□ -1.39
CPNE3-208ENST00000614678 CYP26B1Q9NR63 512 aa6.39□□□□□ -1.39
CPNE3-208ENST00000614678 ST3GAL5Q9UNP4 418 aa6.39□□□□□ -1.39
CPNE3-208ENST00000614678 ATG2AQ2TAZ0 1938 aa6.39□□□□□ -1.39
CPNE3-208ENST00000614678 DNAH14Q0VDD8 3507 aa6.39□□□□□ -1.39
CPNE3-208ENST00000614678 B4GALT5O43286 388 aa6.39□□□□□ -1.39
CPNE3-208ENST00000614678 TLL1O43897 1013 aa6.39□□□□□ -1.39
CPNE3-208ENST00000614678 GJB5O95377 273 aa6.39□□□□□ -1.39
CPNE3-208ENST00000614678 IGFBP4P22692 258 aa6.39□□□□□ -1.39
CPNE3-208ENST00000614678 IGFBP6P24592 240 aaPredicted RBP6.39□□□□□ -1.39
CPNE3-208ENST00000614678 QARSP47897 775 aaKnown RBP6.39□□□□□ -1.39
CPNE3-208ENST00000614678 RBM10P98175 930 aaKnown RBP6.39□□□□□ -1.39
CPNE3-208ENST00000614678 FAM160B1Q5W0V3 765 aa6.39□□□□□ -1.39
CPNE3-208ENST00000614678 PPP2R2DQ66LE6 453 aa6.39□□□□□ -1.39
CPNE3-208ENST00000614678 RPUSD2Q8IZ73 545 aaKnown RBP6.39□□□□□ -1.39
CPNE3-208ENST00000614678 ASAP3Q8TDY4 903 aa6.39□□□□□ -1.39
CPNE3-208ENST00000614678 IFT122Q9HBG6 1241 aa6.39□□□□□ -1.39
CPNE3-208ENST00000614678 TFIP11Q9UBB9 837 aaKnown RBP6.39□□□□□ -1.39
CPNE3-208ENST00000614678 HES2Q9Y543 173 aa6.39□□□□□ -1.39
CPNE3-208ENST00000614678 TCF20Q9UGU0 1960 aaKnown RBP6.39□□□□□ -1.39
CPNE3-208ENST00000614678 A0A1W2PPC1 479 aa6.39□□□□□ -1.39
CPNE3-208ENST00000614678 USO1O60763 962 aaKnown RBP6.39□□□□□ -1.39
CPNE3-208ENST00000614678 GTF2F1P35269 517 aaKnown RBP eCLIP6.39□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms