RNA–Protein interactions for RNA: ENST00000613670.4

LIG1-221, Transcript of DNA ligase 1, humanhuman

TSL 1 (best) BASIC

Gene LIG1, Length 3,949 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-221ENST00000613670 TLR2O60603 784 aa13.63□□□□□ -0.23
LIG1-221ENST00000613670 CAND2O75155 1236 aa13.63□□□□□ -0.23
LIG1-221ENST00000613670 GDF11O95390 407 aa13.63□□□□□ -0.23
LIG1-221ENST00000613670 RSPH10BP0C881 870 aa13.63□□□□□ -0.23
LIG1-221ENST00000613670 ARHGAP4P98171 946 aa13.63□□□□□ -0.23
LIG1-221ENST00000613670 CYP4F22Q6NT55 531 aa13.63□□□□□ -0.23
LIG1-221ENST00000613670 TBC1D22AQ8WUA7 517 aa13.63□□□□□ -0.23
LIG1-221ENST00000613670 PURBQ96QR8 312 aaKnown RBP13.63□□□□□ -0.23
LIG1-221ENST00000613670 MTMR4Q9NYA4 1195 aa13.63□□□□□ -0.23
LIG1-221ENST00000613670 FLT1P17948 1338 aa13.63□□□□□ -0.23
LIG1-221ENST00000613670 K7ENM7 598 aa13.63□□□□□ -0.23
LIG1-221ENST00000613670 GCKP35557 465 aa13.63□□□□□ -0.23
LIG1-221ENST00000613670 PCK1P35558 622 aa13.63□□□□□ -0.23
LIG1-221ENST00000613670 SLC30A10Q6XR72 485 aa13.63□□□□□ -0.23
LIG1-221ENST00000613670 TRIM59Q8IWR1 403 aa13.63□□□□□ -0.23
LIG1-221ENST00000613670 FGFBP2Q9BYJ0 223 aa13.63□□□□□ -0.23
LIG1-221ENST00000613670 TRIM7Q9C029 511 aa13.63□□□□□ -0.23
LIG1-221ENST00000613670 VCPKMTQ9H867 229 aa13.63□□□□□ -0.23
LIG1-221ENST00000613670 PARP2Q9UGN5 583 aa13.63□□□□□ -0.23
LIG1-221ENST00000613670 C5P01031 1676 aa13.63□□□□□ -0.23
LIG1-221ENST00000613670 SUN1O94901 812 aa13.62□□□□□ -0.23
LIG1-221ENST00000613670 TRIM37O94972 964 aa13.62□□□□□ -0.23
LIG1-221ENST00000613670 KRT15P19012 456 aa13.62□□□□□ -0.23
LIG1-221ENST00000613670 CYP11B2P19099 503 aa13.62□□□□□ -0.23
LIG1-221ENST00000613670 KCNJ1P48048 391 aa13.62□□□□□ -0.23
LIG1-221ENST00000613670 PPP2R5AQ15172 486 aa13.62□□□□□ -0.23
LIG1-221ENST00000613670 LRIG3Q6UXM1 1119 aa13.62□□□□□ -0.23
LIG1-221ENST00000613670 FBF1Q8TES7 1133 aa13.62□□□□□ -0.23
LIG1-221ENST00000613670 AMNQ9BXJ7 453 aa13.62□□□□□ -0.23
LIG1-221ENST00000613670 KLHL14Q9P2G3 628 aa13.62□□□□□ -0.23
LIG1-221ENST00000613670 hCG_1984214I3L0E3 225 aa13.62□□□□□ -0.23
LIG1-221ENST00000613670 POTEJP0CG39 1038 aa13.62□□□□□ -0.23
LIG1-221ENST00000613670 HNRNPH3P31942 346 aaKnown RBP13.62□□□□□ -0.23
LIG1-221ENST00000613670 HSPA9P38646 679 aaKnown RBP13.62□□□□□ -0.23
LIG1-221ENST00000613670 ZBTB16Q05516 673 aa13.62□□□□□ -0.23
LIG1-221ENST00000613670 SLC29A2Q14542 456 aa13.62□□□□□ -0.23
LIG1-221ENST00000613670 CERKLQ49MI3 558 aaPredicted RBP13.62□□□□□ -0.23
LIG1-221ENST00000613670 ZC2HC1CQ53FD0 456 aaPredicted RBP13.62□□□□□ -0.23
LIG1-221ENST00000613670 FAM47EQ6ZV65 393 aa13.62□□□□□ -0.23
LIG1-221ENST00000613670 TAB3Q8N5C8 712 aaPredicted RBP13.62□□□□□ -0.23
LIG1-221ENST00000613670 ZNF713Q8N859 430 aaPredicted RBP13.62□□□□□ -0.23
LIG1-221ENST00000613670 JMJD4Q9H9V9 463 aa13.62□□□□□ -0.23
LIG1-221ENST00000613670 GRIN2DO15399 1336 aa13.62□□□□□ -0.23
LIG1-221ENST00000613670 PASKQ96RG2 1323 aa13.62□□□□□ -0.23
LIG1-221ENST00000613670 COL5A2P05997 1499 aaPredicted RBP13.62□□□□□ -0.23
LIG1-221ENST00000613670 NID2Q14112 1375 aa13.62□□□□□ -0.23
LIG1-221ENST00000613670 ELF1P32519 619 aa13.62□□□□□ -0.23
LIG1-221ENST00000613670 ICA1Q05084 483 aa13.62□□□□□ -0.23
LIG1-221ENST00000613670 LRCH2Q5VUJ6 765 aa13.62□□□□□ -0.23
LIG1-221ENST00000613670 FTLP02792 175 aaPredicted RBP13.61□□□□□ -0.23
LIG1-221ENST00000613670 PON1P27169 355 aa13.61□□□□□ -0.23
LIG1-221ENST00000613670 SMTNP53814 917 aa13.61□□□□□ -0.23
LIG1-221ENST00000613670 RFFLQ8WZ73 363 aa13.61□□□□□ -0.23
LIG1-221ENST00000613670 SYN2Q92777 582 aaPredicted RBP13.61□□□□□ -0.23
LIG1-221ENST00000613670 ZNF653Q96CK0 615 aa13.61□□□□□ -0.23
LIG1-221ENST00000613670 SGSM3Q96HU1 749 aa13.61□□□□□ -0.23
LIG1-221ENST00000613670 MED24O75448 989 aa13.61□□□□□ -0.23
LIG1-221ENST00000613670 ATP5DP30049 168 aa13.61□□□□□ -0.23
LIG1-221ENST00000613670 FLT3P36888 993 aa13.61□□□□□ -0.23
LIG1-221ENST00000613670 GRAPQ13588 217 aa13.61□□□□□ -0.23
LIG1-221ENST00000613670 UAP1Q16222 522 aaPredicted RBP13.61□□□□□ -0.23
LIG1-221ENST00000613670 C6orf118Q5T5N4 469 aa13.61□□□□□ -0.23
LIG1-221ENST00000613670 CROCCP2Q86T23 111 aa13.61□□□□□ -0.23
LIG1-221ENST00000613670 GRAPLQ8TC17 118 aaPredicted RBP13.61□□□□□ -0.23
LIG1-221ENST00000613670 RBM17Q96I25 401 aaKnown RBP13.61□□□□□ -0.23
LIG1-221ENST00000613670 INPP4AQ96PE3 977 aaPredicted RBP13.61□□□□□ -0.23
LIG1-221ENST00000613670 TYW1Q9NV66 732 aaKnown RBP13.61□□□□□ -0.23
LIG1-221ENST00000613670 GEMIN8Q9NWZ8 242 aaKnown RBP13.61□□□□□ -0.23
LIG1-221ENST00000613670 TMOD2Q9NZR1 351 aa13.61□□□□□ -0.23
LIG1-221ENST00000613670 CAMTA1Q9Y6Y1 1673 aa13.61□□□□□ -0.23
LIG1-221ENST00000613670 GOLGA8IPA6NC78 632 aa13.61□□□□□ -0.23
LIG1-221ENST00000613670 GOLGA8JA6NMD2 632 aa13.61□□□□□ -0.23
LIG1-221ENST00000613670 SCTRP47872 440 aa13.61□□□□□ -0.23
LIG1-221ENST00000613670 GCLMP48507 274 aa13.61□□□□□ -0.23
LIG1-221ENST00000613670 ITGB3BPQ13352 177 aaPredicted RBP13.61□□□□□ -0.23
LIG1-221ENST00000613670 HGSNATQ68CP4 663 aa13.61□□□□□ -0.23
LIG1-221ENST00000613670 C16orf86Q6ZW13 317 aa13.61□□□□□ -0.23
LIG1-221ENST00000613670 FBXO25Q8TCJ0 367 aa13.61□□□□□ -0.23
LIG1-221ENST00000613670 ARFGEF2Q9Y6D5 1785 aa13.61□□□□□ -0.23
LIG1-221ENST00000613670 AKAP3O75969 853 aa13.6□□□□□ -0.23
LIG1-221ENST00000613670 GAS8O95995 478 aa13.6□□□□□ -0.23
LIG1-221ENST00000613670 ATP2B4P23634 1241 aa13.6□□□□□ -0.23
LIG1-221ENST00000613670 PSMC6P62333 389 aa13.6□□□□□ -0.23
LIG1-221ENST00000613670 ZNF543Q08ER8 600 aa13.6□□□□□ -0.23
LIG1-221ENST00000613670 SGO2Q562F6 1265 aa13.6□□□□□ -0.23
LIG1-221ENST00000613670 KIAA1755Q5JYT7 1200 aa13.6□□□□□ -0.23
LIG1-221ENST00000613670 FRMD5Q7Z6J6 570 aa13.6□□□□□ -0.23
LIG1-221ENST00000613670 CNPY4Q8N129 248 aa13.6□□□□□ -0.23
LIG1-221ENST00000613670 KIF2BQ8N4N8 673 aa13.6□□□□□ -0.23
LIG1-221ENST00000613670 KCNV2Q8TDN2 545 aa13.6□□□□□ -0.23
LIG1-221ENST00000613670 SH2D3AQ9BRG2 576 aa13.6□□□□□ -0.23
LIG1-221ENST00000613670 PARVGQ9HBI0 331 aa13.6□□□□□ -0.23
LIG1-221ENST00000613670 POC1B-GALNT4F8VUJ3 575 aa13.6□□□□□ -0.23
LIG1-221ENST00000613670 CCDC137Q6PK04 289 aaKnown RBP13.6□□□□□ -0.23
LIG1-221ENST00000613670 LRRC34Q8IZ02 419 aa13.6□□□□□ -0.23
LIG1-221ENST00000613670 EHMT1Q9H9B1 1298 aa13.6□□□□□ -0.23
LIG1-221ENST00000613670 SUFUQ9UMX1 484 aa13.6□□□□□ -0.23
LIG1-221ENST00000613670 ECEL1O95672 775 aa13.6□□□□□ -0.23
LIG1-221ENST00000613670 SOX5P35711 763 aa13.6□□□□□ -0.23
LIG1-221ENST00000613670 ORC2Q13416 577 aaPredicted RBP13.6□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 19.2 ms