RNA–Protein interactions for RNA: ENST00000613444.4

USP39-220, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2 BASIC

Gene USP39, Length 2,161 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-220ENST00000613444 CCDC43Q96MW1 224 aaKnown RBP15.78■□□□□ 0.12
USP39-220ENST00000613444 STRA6Q9BX79 667 aa15.78■□□□□ 0.12
USP39-220ENST00000613444 MRPL44Q9H9J2 332 aaKnown RBP15.78■□□□□ 0.12
USP39-220ENST00000613444 DGAT1O75907 488 aa15.77■□□□□ 0.12
USP39-220ENST00000613444 HOXD8P13378 290 aaPredicted RBP15.77■□□□□ 0.12
USP39-220ENST00000613444 NMT1P30419 496 aaKnown RBP15.77■□□□□ 0.12
USP39-220ENST00000613444 SP3Q02447 781 aa15.77■□□□□ 0.12
USP39-220ENST00000613444 ZNF720Q7Z2F6 126 aa15.77■□□□□ 0.12
USP39-220ENST00000613444 ZNF507Q8TCN5 953 aa15.77■□□□□ 0.12
USP39-220ENST00000613444 AFG1LQ8WV93 481 aa15.77■□□□□ 0.12
USP39-220ENST00000613444 MRFAP1L1Q96HT8 127 aa15.77■□□□□ 0.12
USP39-220ENST00000613444 AZI2Q9H6S1 392 aa15.77■□□□□ 0.12
USP39-220ENST00000613444 GNEQ9Y223 722 aaKnown RBP15.77■□□□□ 0.12
USP39-220ENST00000613444 NKRFO15226 690 aaKnown RBP eCLIP15.77■□□□□ 0.11
USP39-220ENST00000613444 TRPA1O75762 1119 aa15.77■□□□□ 0.11
USP39-220ENST00000613444 PPP1R37O75864 691 aa15.77■□□□□ 0.11
USP39-220ENST00000613444 MTERF2Q49AM1 385 aa15.77■□□□□ 0.11
USP39-220ENST00000613444 ODR4Q5SWX8 454 aa15.77■□□□□ 0.11
USP39-220ENST00000613444 XPO4Q9C0E2 1151 aaKnown RBP15.77■□□□□ 0.11
USP39-220ENST00000613444 DHX33Q9H6R0 707 aaKnown RBP15.77■□□□□ 0.11
USP39-220ENST00000613444 IFNKQ9P0W0 207 aa15.77■□□□□ 0.11
USP39-220ENST00000613444 ZBTB42B2RXF5 422 aa15.76■□□□□ 0.11
USP39-220ENST00000613444 EIF3DO15371 548 aaKnown RBP eCLIP15.76■□□□□ 0.11
USP39-220ENST00000613444 PLS3P13797 630 aa15.76■□□□□ 0.11
USP39-220ENST00000613444 FLT3LGP49771 235 aa15.76■□□□□ 0.11
USP39-220ENST00000613444 TNFAIP2Q03169 654 aa15.76■□□□□ 0.11
USP39-220ENST00000613444 LRRC63Q05C16 580 aa15.76■□□□□ 0.11
USP39-220ENST00000613444 FAM178BQ8IXR5 827 aa15.76■□□□□ 0.11
USP39-220ENST00000613444 GLG1Q92896 1179 aa15.76■□□□□ 0.11
USP39-220ENST00000613444 DRC1Q96MC2 740 aa15.76■□□□□ 0.11
USP39-220ENST00000613444 NAP1L5Q96NT1 182 aaPredicted RBP15.76■□□□□ 0.11
USP39-220ENST00000613444 INTS13Q9NVM9 706 aa15.76■□□□□ 0.11
USP39-220ENST00000613444 PRPF6O94906 941 aaKnown RBP15.76■□□□□ 0.11
USP39-220ENST00000613444 GCNT3O95395 438 aa15.76■□□□□ 0.11
USP39-220ENST00000613444 MAPTP10636 758 aaKnown RBP15.76■□□□□ 0.11
USP39-220ENST00000613444 SLC26A2P50443 739 aa15.76■□□□□ 0.11
USP39-220ENST00000613444 SOX10P56693 466 aa15.76■□□□□ 0.11
USP39-220ENST00000613444 KCNA1Q09470 495 aa15.76■□□□□ 0.11
USP39-220ENST00000613444 PLCB4Q15147 1175 aa15.76■□□□□ 0.11
USP39-220ENST00000613444 ZC2HC1CQ53FD0 456 aaPredicted RBP15.76■□□□□ 0.11
USP39-220ENST00000613444 LRRC55Q6ZSA7 311 aa15.76■□□□□ 0.11
USP39-220ENST00000613444 NELFCDQ8IXH7 590 aa15.76■□□□□ 0.11
USP39-220ENST00000613444 CSGALNACT2Q8N6G5 542 aa15.76■□□□□ 0.11
USP39-220ENST00000613444 ATP8B4Q8TF62 1192 aa15.76■□□□□ 0.11
USP39-220ENST00000613444 BBXQ8WY36 941 aaPredicted RBP15.76■□□□□ 0.11
USP39-220ENST00000613444 FAM167AQ96KS9 214 aa15.76■□□□□ 0.11
USP39-220ENST00000613444 SRRTQ9BXP5 876 aaKnown RBP15.76■□□□□ 0.11
USP39-220ENST00000613444 SMARCAD1Q9H4L7 1026 aa15.76■□□□□ 0.11
USP39-220ENST00000613444 THAP9Q9H5L6 903 aa15.76■□□□□ 0.11
USP39-220ENST00000613444 NRBP2Q9NSY0 501 aa15.76■□□□□ 0.11
USP39-220ENST00000613444 LARSQ9P2J5 1176 aaKnown RBP15.76■□□□□ 0.11
USP39-220ENST00000613444 EVPLQ92817 2033 aa15.76■□□□□ 0.11
USP39-220ENST00000613444 ZMYM2Q9UBW7 1377 aa15.75■□□□□ 0.11
USP39-220ENST00000613444 LRRC10BA6NIK2 292 aa15.75■□□□□ 0.11
USP39-220ENST00000613444 LGALS2P05162 132 aa15.75■□□□□ 0.11
USP39-220ENST00000613444 MARK3P27448 753 aa15.75■□□□□ 0.11
USP39-220ENST00000613444 CDC25BP30305 580 aa15.75■□□□□ 0.11
USP39-220ENST00000613444 PRKCZQ05513 592 aa15.75■□□□□ 0.11
USP39-220ENST00000613444 TPD52L1Q16890 204 aaPredicted RBP15.75■□□□□ 0.11
USP39-220ENST00000613444 KNOP1Q1ED39 458 aaKnown RBP15.75■□□□□ 0.11
USP39-220ENST00000613444 FAM102BQ5T8I3 360 aa15.75■□□□□ 0.11
USP39-220ENST00000613444 MCPH1Q8NEM0 835 aa15.75■□□□□ 0.11
USP39-220ENST00000613444 BSNDQ8WZ55 320 aa15.75■□□□□ 0.11
USP39-220ENST00000613444 TRIB2Q92519 343 aa15.75■□□□□ 0.11
USP39-220ENST00000613444 C16orf70Q9BSU1 422 aa15.75■□□□□ 0.11
USP39-220ENST00000613444 ATP6V0A4Q9HBG4 840 aa15.75■□□□□ 0.11
USP39-220ENST00000613444 PPFIA4O75335 1185 aa15.75■□□□□ 0.11
USP39-220ENST00000613444 KIF20AO95235 890 aa15.75■□□□□ 0.11
USP39-220ENST00000613444 MMP3P08254 477 aa15.75■□□□□ 0.11
USP39-220ENST00000613444 UBASH3AP57075 661 aa15.75■□□□□ 0.11
USP39-220ENST00000613444 EMC2Q15006 297 aa15.75■□□□□ 0.11
USP39-220ENST00000613444 TCP11X2Q5H9J9 407 aa15.75■□□□□ 0.11
USP39-220ENST00000613444 ARHGAP30Q7Z6I6 1101 aaPredicted RBP15.75■□□□□ 0.11
USP39-220ENST00000613444 ZC3H3Q8IXZ2 948 aaKnown RBP15.75■□□□□ 0.11
USP39-220ENST00000613444 TRPV1Q8NER1 839 aa15.75■□□□□ 0.11
USP39-220ENST00000613444 OR6J1Q8NGC5 347 aa15.75■□□□□ 0.11
USP39-220ENST00000613444 NOC3LQ8WTT2 800 aaKnown RBP15.75■□□□□ 0.11
USP39-220ENST00000613444 EEF2KMTQ96G04 330 aa15.75■□□□□ 0.11
USP39-220ENST00000613444 ST6GALNAC4Q9H4F1 302 aa15.75■□□□□ 0.11
USP39-220ENST00000613444 LIMA1Q9UHB6 759 aaKnown RBP15.75■□□□□ 0.11
USP39-220ENST00000613444 KAT6AQ92794 2004 aa15.74■□□□□ 0.11
USP39-220ENST00000613444 SERPINC1P01008 464 aa15.74■□□□□ 0.11
USP39-220ENST00000613444 CDK11BP21127 795 aaKnown RBP15.74■□□□□ 0.11
USP39-220ENST00000613444 NCKAP1LP55160 1127 aa15.74■□□□□ 0.11
USP39-220ENST00000613444 RTP1P59025 263 aa15.74■□□□□ 0.11
USP39-220ENST00000613444 KIFAP3Q92845 792 aa15.74■□□□□ 0.11
USP39-220ENST00000613444 LENG1Q96BZ8 264 aaPredicted RBP15.74■□□□□ 0.11
USP39-220ENST00000613444 NTPCRQ9BSD7 190 aaKnown RBP15.74■□□□□ 0.11
USP39-220ENST00000613444 RNPEPQ9H4A4 650 aa15.74■□□□□ 0.11
USP39-220ENST00000613444 ERAP1Q9NZ08 941 aa15.74■□□□□ 0.11
USP39-220ENST00000613444 TRAF3IP3Q9Y228 551 aa15.74■□□□□ 0.11
USP39-220ENST00000613444 PPME1Q9Y570 386 aa15.74■□□□□ 0.11
USP39-220ENST00000613444 UBE4BO95155 1302 aa15.74■□□□□ 0.11
USP39-220ENST00000613444 SIP14410 1827 aa15.73■□□□□ 0.11
USP39-220ENST00000613444 A0A1B0GTH6 734 aa15.73■□□□□ 0.11
USP39-220ENST00000613444 KCNJ18B7U540 433 aa15.73■□□□□ 0.11
USP39-220ENST00000613444 TGFB1I1O43294 461 aa15.73■□□□□ 0.11
USP39-220ENST00000613444 PEX3P56589 373 aa15.73■□□□□ 0.11
USP39-220ENST00000613444 KCNJ12Q14500 433 aa15.73■□□□□ 0.11
USP39-220ENST00000613444 KRT31Q15323 416 aa15.73■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms