RNA–Protein interactions for RNA: ENST00000600868.5

UPF1-211, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 580 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-211ENST00000600868 ADAM17P78536 824 aa15.95■□□□□ 0.14
UPF1-211ENST00000600868 POSTNQ15063 836 aa15.95■□□□□ 0.14
UPF1-211ENST00000600868 MCPH1Q8NEM0 835 aa15.95■□□□□ 0.14
UPF1-211ENST00000600868 LMBR1Q8WVP7 490 aa15.95■□□□□ 0.14
UPF1-211ENST00000600868 TRAPPC12Q8WVT3 735 aa15.95■□□□□ 0.14
UPF1-211ENST00000600868 SLC7A3Q8WY07 619 aa15.95■□□□□ 0.14
UPF1-211ENST00000600868 DDX12PQ92771 950 aa15.95■□□□□ 0.14
UPF1-211ENST00000600868 STAMQ92783 540 aa15.95■□□□□ 0.14
UPF1-211ENST00000600868 NUP62CLQ9H1M0 184 aa15.95■□□□□ 0.14
UPF1-211ENST00000600868 ATP6V0A4Q9HBG4 840 aa15.95■□□□□ 0.14
UPF1-211ENST00000600868 STARD7Q9NQZ5 370 aa15.95■□□□□ 0.14
UPF1-211ENST00000600868 SETD4Q9NVD3 440 aa15.95■□□□□ 0.14
UPF1-211ENST00000600868 GTF2IRD1Q9UHL9 959 aa15.95■□□□□ 0.14
UPF1-211ENST00000600868 KAT6AQ92794 2004 aa15.95■□□□□ 0.14
UPF1-211ENST00000600868 C17orf102A2RUQ5 167 aa15.94■□□□□ 0.14
UPF1-211ENST00000600868 GAS2O43903 313 aaKnown RBP15.94■□□□□ 0.14
UPF1-211ENST00000600868 USO1O60763 962 aaKnown RBP15.94■□□□□ 0.14
UPF1-211ENST00000600868 C22orf31O95567 290 aa15.94■□□□□ 0.14
UPF1-211ENST00000600868 KLRC1P26715 233 aa15.94■□□□□ 0.14
UPF1-211ENST00000600868 IGBP1P78318 339 aa15.94■□□□□ 0.14
UPF1-211ENST00000600868 GIT2Q14161 759 aa15.94■□□□□ 0.14
UPF1-211ENST00000600868 MARCH8Q5T0T0 291 aa15.94■□□□□ 0.14
UPF1-211ENST00000600868 COL13A1Q5TAT6 717 aaPredicted RBP15.94■□□□□ 0.14
UPF1-211ENST00000600868 MTHFD1LQ6UB35 978 aa15.94■□□□□ 0.14
UPF1-211ENST00000600868 GRAMD1CQ8IYS0 662 aa15.94■□□□□ 0.14
UPF1-211ENST00000600868 DNAJC19Q96DA6 116 aa15.94■□□□□ 0.14
UPF1-211ENST00000600868 XPNPEP1Q9NQW7 623 aa15.94■□□□□ 0.14
UPF1-211ENST00000600868 ARVCFO00192 962 aa15.93■□□□□ 0.14
UPF1-211ENST00000600868 COL6A1P12109 1028 aa15.93■□□□□ 0.14
UPF1-211ENST00000600868 DPYDQ12882 1025 aa15.93■□□□□ 0.14
UPF1-211ENST00000600868 CUL4BQ13620 913 aa15.93■□□□□ 0.14
UPF1-211ENST00000600868 HIC1Q14526 733 aa15.93■□□□□ 0.14
UPF1-211ENST00000600868 EMC2Q15006 297 aa15.93■□□□□ 0.14
UPF1-211ENST00000600868 CAMK4Q16566 473 aa15.93■□□□□ 0.14
UPF1-211ENST00000600868 CCDC183Q5T5S1 534 aa15.93■□□□□ 0.14
UPF1-211ENST00000600868 RETREG2Q8NC44 543 aa15.93■□□□□ 0.14
UPF1-211ENST00000600868 SYAP1Q96A49 352 aaPredicted RBP15.93■□□□□ 0.14
UPF1-211ENST00000600868 REEP2Q9BRK0 252 aa15.93■□□□□ 0.14
UPF1-211ENST00000600868 TUBE1Q9UJT0 475 aa15.93■□□□□ 0.14
UPF1-211ENST00000600868 ODF2LQ9ULJ1 636 aa15.93■□□□□ 0.14
UPF1-211ENST00000600868 PCDHA2Q9Y5H9 948 aa15.93■□□□□ 0.14
UPF1-211ENST00000600868 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP15.92■□□□□ 0.14
UPF1-211ENST00000600868 NPHP3-ACAD11A0A0J9YXS1 232 aa15.92■□□□□ 0.14
UPF1-211ENST00000600868 PVALEFA0A1B0GWK0 134 aa15.92■□□□□ 0.14
UPF1-211ENST00000600868 FRMD3A2A2Y4 597 aa15.92■□□□□ 0.14
UPF1-211ENST00000600868 SMC2O95347 1197 aa15.92■□□□□ 0.14
UPF1-211ENST00000600868 KRT18P05783 430 aaKnown RBP15.92■□□□□ 0.14
UPF1-211ENST00000600868 PRR29P0C7W0 189 aa15.92■□□□□ 0.14
UPF1-211ENST00000600868 CASP1P29466 404 aa15.92■□□□□ 0.14
UPF1-211ENST00000600868 CDK7P50613 346 aa15.92■□□□□ 0.14
UPF1-211ENST00000600868 ASIC1P78348 528 aa15.92■□□□□ 0.14
UPF1-211ENST00000600868 PNOCQ13519 176 aa15.92■□□□□ 0.14
UPF1-211ENST00000600868 FAM47CQ5HY64 1035 aa15.92■□□□□ 0.14
UPF1-211ENST00000600868 IER5Q5VY09 327 aa15.92■□□□□ 0.14
UPF1-211ENST00000600868 EFCAB12Q6NXP0 572 aa15.92■□□□□ 0.14
UPF1-211ENST00000600868 CAVIN1Q6NZI2 390 aaKnown RBP15.92■□□□□ 0.14
UPF1-211ENST00000600868 DYMQ7RTS9 669 aa15.92■□□□□ 0.14
UPF1-211ENST00000600868 LINC01465Q8N7H1 131 aa15.92■□□□□ 0.14
UPF1-211ENST00000600868 PPP1R13LQ8WUF5 828 aa15.92■□□□□ 0.14
UPF1-211ENST00000600868 TCP11Q8WWU5 503 aa15.92■□□□□ 0.14
UPF1-211ENST00000600868 DRC1Q96MC2 740 aa15.92■□□□□ 0.14
UPF1-211ENST00000600868 SENP6Q9GZR1 1112 aaPredicted RBP15.92■□□□□ 0.14
UPF1-211ENST00000600868 BLZF1Q9H2G9 400 aa15.92■□□□□ 0.14
UPF1-211ENST00000600868 TMEM63CQ9P1W3 806 aa15.92■□□□□ 0.14
UPF1-211ENST00000600868 KIAA0100Q14667 2235 aaKnown RBP15.92■□□□□ 0.14
UPF1-211ENST00000600868 SMIM35A0A1B0GVV1 85 aa15.91■□□□□ 0.14
UPF1-211ENST00000600868 TREHO43280 583 aa15.91■□□□□ 0.14
UPF1-211ENST00000600868 HIP1RO75146 1068 aa15.91■□□□□ 0.14
UPF1-211ENST00000600868 TMOD1P28289 359 aa15.91■□□□□ 0.14
UPF1-211ENST00000600868 ARL2P36404 184 aa15.91■□□□□ 0.14
UPF1-211ENST00000600868 ZNF131P52739 623 aa15.91■□□□□ 0.14
UPF1-211ENST00000600868 RTP1P59025 263 aa15.91■□□□□ 0.14
UPF1-211ENST00000600868 ZNF200P98182 395 aaPredicted RBP15.91■□□□□ 0.14
UPF1-211ENST00000600868 RAD51AP2Q09MP3 1159 aa15.91■□□□□ 0.14
UPF1-211ENST00000600868 MAPK7Q13164 816 aa15.91■□□□□ 0.14
UPF1-211ENST00000600868 NT5DC1Q5TFE4 455 aa15.91■□□□□ 0.14
UPF1-211ENST00000600868 C1orf53Q5VUE5 145 aa15.91■□□□□ 0.14
UPF1-211ENST00000600868 GDF6Q6KF10 455 aaPredicted RBP15.91■□□□□ 0.14
UPF1-211ENST00000600868 RBM43Q6ZSC3 357 aaKnown RBP15.91■□□□□ 0.14
UPF1-211ENST00000600868 UNC13DQ70J99 1090 aa15.91■□□□□ 0.14
UPF1-211ENST00000600868 METTL13Q8N6R0 699 aa15.91■□□□□ 0.14
UPF1-211ENST00000600868 SPATA20Q8TB22 786 aa15.91■□□□□ 0.14
UPF1-211ENST00000600868 DIS3LQ8TF46 1054 aaKnown RBP15.91■□□□□ 0.14
UPF1-211ENST00000600868 KIFAP3Q92845 792 aa15.91■□□□□ 0.14
UPF1-211ENST00000600868 C11orf49Q9H6J7 331 aa15.91■□□□□ 0.14
UPF1-211ENST00000600868 SUGCTQ9HAC7 445 aa15.91■□□□□ 0.14
UPF1-211ENST00000600868 PCDHA5Q9Y5H7 936 aa15.91■□□□□ 0.14
UPF1-211ENST00000600868 KLRC4O43908 158 aa15.9■□□□□ 0.14
UPF1-211ENST00000600868 TBCAO75347 108 aaKnown RBP15.9■□□□□ 0.14
UPF1-211ENST00000600868 FAM13AO94988 1023 aa15.9■□□□□ 0.14
UPF1-211ENST00000600868 RPN1P04843 607 aaKnown RBP15.9■□□□□ 0.14
UPF1-211ENST00000600868 RPLP2P05387 115 aaKnown RBP15.9■□□□□ 0.14
UPF1-211ENST00000600868 CYP2C9P11712 490 aa15.9■□□□□ 0.14
UPF1-211ENST00000600868 IDEP14735 1019 aa15.9■□□□□ 0.14
UPF1-211ENST00000600868 SARSP49591 514 aaKnown RBP15.9■□□□□ 0.14
UPF1-211ENST00000600868 DNM2P50570 870 aa15.9■□□□□ 0.14
UPF1-211ENST00000600868 MKRN4PQ13434 485 aaPredicted RBP15.9■□□□□ 0.14
UPF1-211ENST00000600868 SNX17Q15036 470 aa15.9■□□□□ 0.14
UPF1-211ENST00000600868 FAM102BQ5T8I3 360 aa15.9■□□□□ 0.14
UPF1-211ENST00000600868 TAF2Q6P1X5 1199 aa15.9■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 14.9 ms