RNA–Protein interactions for RNA: ENST00000596672.5

LIG1-213, Transcript of DNA ligase 1, humanhuman

TSL 3

Gene LIG1, Length 792 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-213ENST00000596672 KCNMB3Q9NPA1 279 aa11.85□□□□□ -0.51
LIG1-213ENST00000596672 GINS2Q9Y248 185 aa11.85□□□□□ -0.51
LIG1-213ENST00000596672 PCDHGC5Q9Y5F6 944 aa11.85□□□□□ -0.51
LIG1-213ENST00000596672 WDR64B1ANS9 1081 aa11.84□□□□□ -0.51
LIG1-213ENST00000596672 TNFRSF10AO00220 468 aa11.84□□□□□ -0.51
LIG1-213ENST00000596672 CPLX1O14810 134 aa11.84□□□□□ -0.51
LIG1-213ENST00000596672 ZBTB39O15060 712 aa11.84□□□□□ -0.51
LIG1-213ENST00000596672 CSDE1O75534 798 aaKnown RBP11.84□□□□□ -0.51
LIG1-213ENST00000596672 OATP04181 439 aa11.84□□□□□ -0.51
LIG1-213ENST00000596672 FGFR4P22455 802 aa11.84□□□□□ -0.51
LIG1-213ENST00000596672 IRS1P35568 1242 aa11.84□□□□□ -0.51
LIG1-213ENST00000596672 FAM189BP81408 668 aa11.84□□□□□ -0.51
LIG1-213ENST00000596672 DLX2Q07687 328 aaPredicted RBP11.84□□□□□ -0.51
LIG1-213ENST00000596672 NFX1Q12986 1120 aaKnown RBP11.84□□□□□ -0.51
LIG1-213ENST00000596672 PAK2Q13177 524 aa11.84□□□□□ -0.51
LIG1-213ENST00000596672 PAN2Q504Q3 1202 aaKnown RBP11.84□□□□□ -0.51
LIG1-213ENST00000596672 LRCH2Q5VUJ6 765 aa11.84□□□□□ -0.51
LIG1-213ENST00000596672 EFCAB12Q6NXP0 572 aa11.84□□□□□ -0.51
LIG1-213ENST00000596672 TRIM22Q8IYM9 498 aa11.84□□□□□ -0.51
LIG1-213ENST00000596672 FIBCD1Q8N539 461 aa11.84□□□□□ -0.51
LIG1-213ENST00000596672 NSUN7Q8NE18 718 aaKnown RBP11.84□□□□□ -0.51
LIG1-213ENST00000596672 HLA-CQ95604 372 aa11.84□□□□□ -0.51
LIG1-213ENST00000596672 SLKQ9H2G2 1235 aaPredicted RBP11.84□□□□□ -0.51
LIG1-213ENST00000596672 UBE2ZQ9H832 354 aaPredicted RBP11.84□□□□□ -0.51
LIG1-213ENST00000596672 ALG13Q9NP73 1137 aaKnown RBP11.84□□□□□ -0.51
LIG1-213ENST00000596672 RAPGEFL1Q9UHV5 662 aa11.84□□□□□ -0.51
LIG1-213ENST00000596672 STK36Q9NRP7 1315 aa11.84□□□□□ -0.51
LIG1-213ENST00000596672 IGKV6-21A0A0C4DH24 114 aa11.83□□□□□ -0.52
LIG1-213ENST00000596672 GAS7O60861 476 aa11.83□□□□□ -0.52
LIG1-213ENST00000596672 ITGB1P05556 798 aa11.83□□□□□ -0.52
LIG1-213ENST00000596672 IBSPP21815 317 aaPredicted RBP11.83□□□□□ -0.52
LIG1-213ENST00000596672 CTNNB1P35222 781 aa11.83□□□□□ -0.52
LIG1-213ENST00000596672 CRYBB1P53674 252 aaPredicted RBP11.83□□□□□ -0.52
LIG1-213ENST00000596672 NLRP11P59045 1033 aaKnown RBP11.83□□□□□ -0.52
LIG1-213ENST00000596672 ANAPC15P60006 121 aa11.83□□□□□ -0.52
LIG1-213ENST00000596672 SPIRE1Q08AE8 756 aa11.83□□□□□ -0.52
LIG1-213ENST00000596672 MOXD1Q6UVY6 613 aa11.83□□□□□ -0.52
LIG1-213ENST00000596672 LRRC55Q6ZSA7 311 aa11.83□□□□□ -0.52
LIG1-213ENST00000596672 ANO5Q75V66 913 aa11.83□□□□□ -0.52
LIG1-213ENST00000596672 NPAS4Q8IUM7 802 aa11.83□□□□□ -0.52
LIG1-213ENST00000596672 CKAP2LQ8IYA6 745 aa11.83□□□□□ -0.52
LIG1-213ENST00000596672 METTL13Q8N6R0 699 aa11.83□□□□□ -0.52
LIG1-213ENST00000596672 BANK1Q8NDB2 785 aa11.83□□□□□ -0.52
LIG1-213ENST00000596672 SPPL3Q8TCT6 385 aa11.83□□□□□ -0.52
LIG1-213ENST00000596672 SYMPKQ92797 1274 aaKnown RBP11.83□□□□□ -0.52
LIG1-213ENST00000596672 ADAM2Q99965 735 aa11.83□□□□□ -0.52
LIG1-213ENST00000596672 TEKT3Q9BXF9 490 aa11.83□□□□□ -0.52
LIG1-213ENST00000596672 NIFKQ9BYG3 293 aaKnown RBP11.83□□□□□ -0.52
LIG1-213ENST00000596672 RGS18Q9NS28 235 aa11.83□□□□□ -0.52
LIG1-213ENST00000596672 ORC3Q9UBD5 711 aaPredicted RBP11.83□□□□□ -0.52
LIG1-213ENST00000596672 COG5Q9UP83 839 aa11.83□□□□□ -0.52
LIG1-213ENST00000596672 PLAGL2Q9UPG8 496 aa11.83□□□□□ -0.52
LIG1-213ENST00000596672 MUC6Q6W4X9 2439 aa11.83□□□□□ -0.52
LIG1-213ENST00000596672 H3BQ06 376 aaPredicted RBP11.82□□□□□ -0.52
LIG1-213ENST00000596672 LINC01565O15544 149 aa11.82□□□□□ -0.52
LIG1-213ENST00000596672 RPS6KA5O75582 802 aa11.82□□□□□ -0.52
LIG1-213ENST00000596672 CSPG5O95196 566 aa11.82□□□□□ -0.52
LIG1-213ENST00000596672 FGFR1P11362 822 aa11.82□□□□□ -0.52
LIG1-213ENST00000596672 IL9P15248 144 aa11.82□□□□□ -0.52
LIG1-213ENST00000596672 ATF7P17544 494 aaPredicted RBP11.82□□□□□ -0.52
LIG1-213ENST00000596672 KCNA5P22460 613 aa11.82□□□□□ -0.52
LIG1-213ENST00000596672 SARSP49591 514 aaKnown RBP11.82□□□□□ -0.52
LIG1-213ENST00000596672 GPC3P51654 580 aa11.82□□□□□ -0.52
LIG1-213ENST00000596672 FOSBP53539 338 aa11.82□□□□□ -0.52
LIG1-213ENST00000596672 NPEPPSP55786 919 aa11.82□□□□□ -0.52
LIG1-213ENST00000596672 HYAL1Q12794 435 aa11.82□□□□□ -0.52
LIG1-213ENST00000596672 BTG3Q14201 252 aaPredicted RBP11.82□□□□□ -0.52
LIG1-213ENST00000596672 NONOQ15233 471 aaKnown RBP eCLIP11.82□□□□□ -0.52
LIG1-213ENST00000596672 LETM2Q2VYF4 491 aa11.82□□□□□ -0.52
LIG1-213ENST00000596672 PLA2G4FQ68DD2 849 aa11.82□□□□□ -0.52
LIG1-213ENST00000596672 PIK3AP1Q6ZUJ8 805 aa11.82□□□□□ -0.52
LIG1-213ENST00000596672 MIER3Q7Z3K6 550 aa11.82□□□□□ -0.52
LIG1-213ENST00000596672 ADGRD2Q7Z7M1 963 aa11.82□□□□□ -0.52
LIG1-213ENST00000596672 KSR1Q8IVT5 923 aa11.82□□□□□ -0.52
LIG1-213ENST00000596672 NEK9Q8TD19 979 aa11.82□□□□□ -0.52
LIG1-213ENST00000596672 GTF3C6Q969F1 213 aa11.82□□□□□ -0.52
LIG1-213ENST00000596672 SAMD11Q96NU1 681 aa11.82□□□□□ -0.52
LIG1-213ENST00000596672 EPHX3Q9H6B9 360 aa11.82□□□□□ -0.52
LIG1-213ENST00000596672 DDX25Q9UHL0 483 aaKnown RBP11.82□□□□□ -0.52
LIG1-213ENST00000596672 SAMM50Q9Y512 469 aa11.82□□□□□ -0.52
LIG1-213ENST00000596672 ARID2Q68CP9 1835 aa11.81□□□□□ -0.52
LIG1-213ENST00000596672 JAK3P52333 1124 aa11.81□□□□□ -0.52
LIG1-213ENST00000596672 RBM10P98175 930 aaKnown RBP11.81□□□□□ -0.52
LIG1-213ENST00000596672 CTC1Q2NKJ3 1217 aa11.81□□□□□ -0.52
LIG1-213ENST00000596672 C8orf34Q49A92 452 aa11.81□□□□□ -0.52
LIG1-213ENST00000596672 MTERF2Q49AM1 385 aa11.81□□□□□ -0.52
LIG1-213ENST00000596672 GALNT17Q6IS24 598 aa11.81□□□□□ -0.52
LIG1-213ENST00000596672 KRT25Q7Z3Z0 450 aa11.81□□□□□ -0.52
LIG1-213ENST00000596672 POTEDQ86YR6 584 aa11.81□□□□□ -0.52
LIG1-213ENST00000596672 CMTR2Q8IYT2 770 aaKnown RBP11.81□□□□□ -0.52
LIG1-213ENST00000596672 KLHL23Q8NBE8 558 aa11.81□□□□□ -0.52
LIG1-213ENST00000596672 FTHL17Q9BXU8 183 aa11.81□□□□□ -0.52
LIG1-213ENST00000596672 CWH43Q9H720 699 aa11.81□□□□□ -0.52
LIG1-213ENST00000596672 RGL1Q9NZL6 768 aa11.81□□□□□ -0.52
LIG1-213ENST00000596672 A0A087WWV3 80 aa11.8□□□□□ -0.52
LIG1-213ENST00000596672 MEIS3P2A8K0S8 358 aa11.8□□□□□ -0.52
LIG1-213ENST00000596672 BTBD18B2RXH4 712 aa11.8□□□□□ -0.52
LIG1-213ENST00000596672 M0QZ92 97 aa11.8□□□□□ -0.52
LIG1-213ENST00000596672 MAGEB2O15479 319 aa11.8□□□□□ -0.52
LIG1-213ENST00000596672 RB1P06400 928 aa11.8□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms