RNA–Protein interactions for RNA: ENST00000589604.5

VPS4B-204, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

TSL 1 (best)

Gene VPS4B, Length 1,672 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-204ENST00000589604 UGCGQ16739 394 aa11.62□□□□□ -0.55
VPS4B-204ENST00000589604 UTP14CQ5TAP6 766 aaKnown RBP11.62□□□□□ -0.55
VPS4B-204ENST00000589604 ZNF658Q5TYW1 1059 aaPredicted RBP11.62□□□□□ -0.55
VPS4B-204ENST00000589604 UNC13DQ70J99 1090 aa11.62□□□□□ -0.55
VPS4B-204ENST00000589604 CCDC60Q8IWA6 550 aaPredicted RBP11.62□□□□□ -0.55
VPS4B-204ENST00000589604 TPH2Q8IWU9 490 aa11.62□□□□□ -0.55
VPS4B-204ENST00000589604 BANK1Q8NDB2 785 aa11.62□□□□□ -0.55
VPS4B-204ENST00000589604 NEK9Q8TD19 979 aa11.62□□□□□ -0.55
VPS4B-204ENST00000589604 PIGOQ8TEQ8 1089 aa11.62□□□□□ -0.55
VPS4B-204ENST00000589604 LXNQ9BS40 222 aa11.62□□□□□ -0.55
VPS4B-204ENST00000589604 TSEN34Q9BSV6 310 aaKnown RBP11.62□□□□□ -0.55
VPS4B-204ENST00000589604 SENP6Q9GZR1 1112 aaPredicted RBP11.62□□□□□ -0.55
VPS4B-204ENST00000589604 SPC25Q9HBM1 224 aa11.62□□□□□ -0.55
VPS4B-204ENST00000589604 DNM3Q9UQ16 869 aa11.62□□□□□ -0.55
VPS4B-204ENST00000589604 GDAQ9Y2T3 454 aa11.62□□□□□ -0.55
VPS4B-204ENST00000589604 NPHP3-ACAD11A0A0J9YXS1 232 aa11.62□□□□□ -0.55
VPS4B-204ENST00000589604 FRMD3A2A2Y4 597 aa11.62□□□□□ -0.55
VPS4B-204ENST00000589604 WDR64B1ANS9 1081 aa11.62□□□□□ -0.55
VPS4B-204ENST00000589604 IKBKBO14920 756 aa11.62□□□□□ -0.55
VPS4B-204ENST00000589604 TRIM66O15016 1216 aa11.62□□□□□ -0.55
VPS4B-204ENST00000589604 LGR5O75473 907 aa11.62□□□□□ -0.55
VPS4B-204ENST00000589604 STBD1O95210 358 aa11.62□□□□□ -0.55
VPS4B-204ENST00000589604 F2P00734 622 aa11.62□□□□□ -0.55
VPS4B-204ENST00000589604 SUPT20HL2P0C7V6 817 aa11.62□□□□□ -0.55
VPS4B-204ENST00000589604 ATP4AP20648 1035 aa11.62□□□□□ -0.55
VPS4B-204ENST00000589604 SFNP31947 248 aa11.62□□□□□ -0.55
VPS4B-204ENST00000589604 ASIC1P78348 528 aa11.62□□□□□ -0.55
VPS4B-204ENST00000589604 DGKDQ16760 1214 aa11.62□□□□□ -0.55
VPS4B-204ENST00000589604 DYMQ7RTS9 669 aa11.62□□□□□ -0.55
VPS4B-204ENST00000589604 GPBP1Q86WP2 473 aa11.62□□□□□ -0.55
VPS4B-204ENST00000589604 RDM1Q8NG50 284 aa11.62□□□□□ -0.55
VPS4B-204ENST00000589604 SEPT1Q8WYJ6 367 aa11.62□□□□□ -0.55
VPS4B-204ENST00000589604 NAT10Q9H0A0 1025 aaKnown RBP11.62□□□□□ -0.55
VPS4B-204ENST00000589604 RMND1Q9NWS8 449 aa11.62□□□□□ -0.55
VPS4B-204ENST00000589604 MOXD2PA6NHM9 499 aa11.61□□□□□ -0.55
VPS4B-204ENST00000589604 HAS3O00219 553 aa11.61□□□□□ -0.55
VPS4B-204ENST00000589604 NOP56O00567 594 aaKnown RBP11.61□□□□□ -0.55
VPS4B-204ENST00000589604 ZNF862O60290 1169 aa11.61□□□□□ -0.55
VPS4B-204ENST00000589604 ERCC5P28715 1186 aaPredicted RBP11.61□□□□□ -0.55
VPS4B-204ENST00000589604 PRCPP42785 496 aa11.61□□□□□ -0.55
VPS4B-204ENST00000589604 JAK3P52333 1124 aa11.61□□□□□ -0.55
VPS4B-204ENST00000589604 ATN1P54259 1190 aaPredicted RBP11.61□□□□□ -0.55
VPS4B-204ENST00000589604 STK4Q13043 487 aa11.61□□□□□ -0.55
VPS4B-204ENST00000589604 GIT2Q14161 759 aa11.61□□□□□ -0.55
VPS4B-204ENST00000589604 LRRC26Q2I0M4 334 aa11.61□□□□□ -0.55
VPS4B-204ENST00000589604 CT47A1Q5JQC4 288 aaPredicted RBP11.61□□□□□ -0.55
VPS4B-204ENST00000589604 C1orf186Q6ZWK4 172 aa11.61□□□□□ -0.55
VPS4B-204ENST00000589604 PCSK9Q8NBP7 692 aaKnown RBP11.61□□□□□ -0.55
VPS4B-204ENST00000589604 HPS3Q969F9 1004 aa11.61□□□□□ -0.55
VPS4B-204ENST00000589604 NACC1Q96RE7 527 aa11.61□□□□□ -0.55
VPS4B-204ENST00000589604 RUSC1Q9BVN2 902 aa11.61□□□□□ -0.55
VPS4B-204ENST00000589604 LRRC27Q9C0I9 530 aa11.61□□□□□ -0.55
VPS4B-204ENST00000589604 BHMT2Q9H2M3 363 aa11.61□□□□□ -0.55
VPS4B-204ENST00000589604 RNF39Q9H2S5 420 aa11.61□□□□□ -0.55
VPS4B-204ENST00000589604 RNPEPQ9H4A4 650 aa11.61□□□□□ -0.55
VPS4B-204ENST00000589604 C11orf49Q9H6J7 331 aa11.61□□□□□ -0.55
VPS4B-204ENST00000589604 PCDHA2Q9Y5H9 948 aa11.61□□□□□ -0.55
VPS4B-204ENST00000589604 SSBP05455 408 aaKnown RBP eCLIP11.6□□□□□ -0.55
VPS4B-204ENST00000589604 QARSP47897 775 aaKnown RBP11.6□□□□□ -0.55
VPS4B-204ENST00000589604 PSEN2P49810 448 aa11.6□□□□□ -0.55
VPS4B-204ENST00000589604 CHMP4BP1P59074 171 aa11.6□□□□□ -0.55
VPS4B-204ENST00000589604 NBPF20Q3BBV1 942 aa11.6□□□□□ -0.55
VPS4B-204ENST00000589604 COBLL1Q53SF7 1204 aa11.6□□□□□ -0.55
VPS4B-204ENST00000589604 RINT1Q6NUQ1 792 aa11.6□□□□□ -0.55
VPS4B-204ENST00000589604 SWSAP1Q6NVH7 229 aa11.6□□□□□ -0.55
VPS4B-204ENST00000589604 C4orf19Q8IY42 314 aa11.6□□□□□ -0.55
VPS4B-204ENST00000589604 ADSSL1Q8N142 457 aa11.6□□□□□ -0.55
VPS4B-204ENST00000589604 SLC43A3Q8NBI5 491 aa11.6□□□□□ -0.55
VPS4B-204ENST00000589604 KIAA0895Q8NCT3 520 aa11.6□□□□□ -0.55
VPS4B-204ENST00000589604 ENOX1Q8TC92 643 aaKnown RBP11.6□□□□□ -0.55
VPS4B-204ENST00000589604 PDLIM2Q96JY6 352 aa11.6□□□□□ -0.55
VPS4B-204ENST00000589604 MTG1Q9BT17 334 aaPredicted RBP11.6□□□□□ -0.55
VPS4B-204ENST00000589604 ZSWIM4Q9H7M6 989 aa11.6□□□□□ -0.55
VPS4B-204ENST00000589604 PCDHA10Q9Y5I2 948 aa11.6□□□□□ -0.55
VPS4B-204ENST00000589604 EMSYQ7Z589 1322 aa11.6□□□□□ -0.55
VPS4B-204ENST00000589604 TMEM150BA6NC51 233 aa11.59□□□□□ -0.55
VPS4B-204ENST00000589604 H3BRB1 525 aa11.59□□□□□ -0.55
VPS4B-204ENST00000589604 MARK3P27448 753 aa11.59□□□□□ -0.55
VPS4B-204ENST00000589604 CDK7P50613 346 aa11.59□□□□□ -0.55
VPS4B-204ENST00000589604 MYL5Q02045 173 aa11.59□□□□□ -0.55
VPS4B-204ENST00000589604 COASYQ13057 564 aa11.59□□□□□ -0.55
VPS4B-204ENST00000589604 MFSD10Q14728 455 aa11.59□□□□□ -0.55
VPS4B-204ENST00000589604 KIAA0753Q2KHM9 967 aa11.59□□□□□ -0.55
VPS4B-204ENST00000589604 SLC39A5Q6ZMH5 540 aa11.59□□□□□ -0.55
VPS4B-204ENST00000589604 NECAB2Q7Z6G3 386 aa11.59□□□□□ -0.55
VPS4B-204ENST00000589604 SMAP1Q8IYB5 467 aaPredicted RBP11.59□□□□□ -0.55
VPS4B-204ENST00000589604 GLIS3Q8NEA6 775 aa11.59□□□□□ -0.55
VPS4B-204ENST00000589604 CTAGE1Q96RT6 745 aa11.59□□□□□ -0.55
VPS4B-204ENST00000589604 PPP1R9BQ96SB3 815 aa11.59□□□□□ -0.55
VPS4B-204ENST00000589604 TUT1Q9H6E5 874 aaKnown RBP11.59□□□□□ -0.55
VPS4B-204ENST00000589604 GABBR1Q9UBS5 961 aa11.59□□□□□ -0.55
VPS4B-204ENST00000589604 DBR1Q9UK59 544 aaKnown RBP11.59□□□□□ -0.55
VPS4B-204ENST00000589604 IGSF9BQ9UPX0 1349 aa11.59□□□□□ -0.55
VPS4B-204ENST00000589604 SMTNL1A8MU46 457 aa11.59□□□□□ -0.55
VPS4B-204ENST00000589604 ZEB2O60315 1214 aa11.59□□□□□ -0.55
VPS4B-204ENST00000589604 PSMC5P62195 406 aa11.59□□□□□ -0.55
VPS4B-204ENST00000589604 ZNF200P98182 395 aaPredicted RBP11.59□□□□□ -0.55
VPS4B-204ENST00000589604 CACNB1Q02641 598 aaPredicted RBP11.59□□□□□ -0.55
VPS4B-204ENST00000589604 ITGA7Q13683 1181 aa11.59□□□□□ -0.55
VPS4B-204ENST00000589604 SNX17Q15036 470 aa11.59□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms