RNA–Protein interactions for RNA: ENST00000582653.1

SHMT1-209, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 3

Gene SHMT1, Length 879 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-209ENST00000582653 ZNF862O60290 1169 aa23.11■■□□□ 1.29
SHMT1-209ENST00000582653 MGEA5O60502 916 aa23.11■■□□□ 1.29
SHMT1-209ENST00000582653 GPR32O75388 356 aa23.11■■□□□ 1.29
SHMT1-209ENST00000582653 MMP1P03956 469 aa23.11■■□□□ 1.29
SHMT1-209ENST00000582653 VTNP04004 478 aa23.11■■□□□ 1.29
SHMT1-209ENST00000582653 IBSPP21815 317 aaPredicted RBP23.11■■□□□ 1.29
SHMT1-209ENST00000582653 HYAL1Q12794 435 aa23.11■■□□□ 1.29
SHMT1-209ENST00000582653 UGCGQ16739 394 aa23.11■■□□□ 1.29
SHMT1-209ENST00000582653 Q4G0T1 1027 aa23.11■■□□□ 1.29
SHMT1-209ENST00000582653 LRCH2Q5VUJ6 765 aa23.11■■□□□ 1.29
SHMT1-209ENST00000582653 EP400NLQ6ZTU2 488 aa23.11■■□□□ 1.29
SHMT1-209ENST00000582653 SLC24A5Q71RS6 500 aa23.11■■□□□ 1.29
SHMT1-209ENST00000582653 DAGLBQ8NCG7 672 aa23.11■■□□□ 1.29
SHMT1-209ENST00000582653 SPPL3Q8TCT6 385 aa23.11■■□□□ 1.29
SHMT1-209ENST00000582653 FAM167AQ96KS9 214 aa23.11■■□□□ 1.29
SHMT1-209ENST00000582653 ADAM2Q99965 735 aa23.11■■□□□ 1.29
SHMT1-209ENST00000582653 TEKT3Q9BXF9 490 aa23.11■■□□□ 1.29
SHMT1-209ENST00000582653 C22orf23Q9BZE7 217 aa23.11■■□□□ 1.29
SHMT1-209ENST00000582653 C1orf112Q9NSG2 853 aa23.11■■□□□ 1.29
SHMT1-209ENST00000582653 NRBP2Q9NSY0 501 aa23.11■■□□□ 1.29
SHMT1-209ENST00000582653 FAM50BQ9Y247 325 aa23.11■■□□□ 1.29
SHMT1-209ENST00000582653 LOXHD1Q8IVV2 1947 aa23.11■■□□□ 1.29
SHMT1-209ENST00000582653 PSMD10O75832 226 aa23.1■■□□□ 1.29
SHMT1-209ENST00000582653 AK2P54819 239 aa23.1■■□□□ 1.29
SHMT1-209ENST00000582653 FAM189BP81408 668 aa23.1■■□□□ 1.29
SHMT1-209ENST00000582653 KIZQ2M2Z5 673 aa23.1■■□□□ 1.29
SHMT1-209ENST00000582653 PAN2Q504Q3 1202 aaKnown RBP23.1■■□□□ 1.29
SHMT1-209ENST00000582653 ZNF710Q8N1W2 664 aa23.1■■□□□ 1.29
SHMT1-209ENST00000582653 LRFN3Q9BTN0 628 aa23.1■■□□□ 1.29
SHMT1-209ENST00000582653 CYP3A7-CYP3A51PA0A087WV96 503 aa23.09■■□□□ 1.29
SHMT1-209ENST00000582653 DENND3A2RUS2 1198 aa23.09■■□□□ 1.29
SHMT1-209ENST00000582653 C9IYK1 514 aa23.09■■□□□ 1.29
SHMT1-209ENST00000582653 PFKFB2O60825 505 aa23.09■■□□□ 1.29
SHMT1-209ENST00000582653 ITGB1P05556 798 aa23.09■■□□□ 1.29
SHMT1-209ENST00000582653 CYP3A7P24462 503 aa23.09■■□□□ 1.29
SHMT1-209ENST00000582653 CLCN3P51790 818 aa23.09■■□□□ 1.29
SHMT1-209ENST00000582653 NONOQ15233 471 aaKnown RBP eCLIP23.09■■□□□ 1.29
SHMT1-209ENST00000582653 INF2Q27J81 1249 aa23.09■■□□□ 1.29
SHMT1-209ENST00000582653 GALNT17Q6IS24 598 aa23.09■■□□□ 1.29
SHMT1-209ENST00000582653 EFCAB12Q6NXP0 572 aa23.09■■□□□ 1.29
SHMT1-209ENST00000582653 KLHL23Q8NBE8 558 aa23.09■■□□□ 1.29
SHMT1-209ENST00000582653 OSMRQ99650 979 aa23.09■■□□□ 1.29
SHMT1-209ENST00000582653 PHF20Q9BVI0 1012 aa23.09■■□□□ 1.29
SHMT1-209ENST00000582653 RAPGEFL1Q9UHV5 662 aa23.09■■□□□ 1.29
SHMT1-209ENST00000582653 GPR37L1O60883 481 aa23.08■■□□□ 1.29
SHMT1-209ENST00000582653 CDKL5O76039 1030 aa23.08■■□□□ 1.29
SHMT1-209ENST00000582653 CTDNEP1O95476 244 aa23.08■■□□□ 1.29
SHMT1-209ENST00000582653 OATP04181 439 aa23.08■■□□□ 1.29
SHMT1-209ENST00000582653 DNAJB1P25685 340 aa23.08■■□□□ 1.29
SHMT1-209ENST00000582653 TMOD1P28289 359 aa23.08■■□□□ 1.29
SHMT1-209ENST00000582653 SFNP31947 248 aa23.08■■□□□ 1.29
SHMT1-209ENST00000582653 GATMP50440 423 aa23.08■■□□□ 1.29
SHMT1-209ENST00000582653 ANAPC15P60006 121 aa23.08■■□□□ 1.29
SHMT1-209ENST00000582653 PRKCEQ02156 737 aa23.08■■□□□ 1.29
SHMT1-209ENST00000582653 FAM228AQ86W67 206 aa23.08■■□□□ 1.29
SHMT1-209ENST00000582653 LRRC71Q8N4P6 559 aa23.08■■□□□ 1.29
SHMT1-209ENST00000582653 LINC01465Q8N7H1 131 aa23.08■■□□□ 1.29
SHMT1-209ENST00000582653 PRKAG3Q9UGI9 489 aa23.08■■□□□ 1.29
SHMT1-209ENST00000582653 EVPLQ92817 2033 aa23.08■■□□□ 1.28
SHMT1-209ENST00000582653 NLRP11P59045 1033 aaKnown RBP23.07■■□□□ 1.28
SHMT1-209ENST00000582653 ADAM15Q13444 863 aa23.07■■□□□ 1.28
SHMT1-209ENST00000582653 TMEM31Q5JXX7 168 aa23.07■■□□□ 1.28
SHMT1-209ENST00000582653 FAM102BQ5T8I3 360 aa23.07■■□□□ 1.28
SHMT1-209ENST00000582653 MIER3Q7Z3K6 550 aa23.07■■□□□ 1.28
SHMT1-209ENST00000582653 KRT25Q7Z3Z0 450 aa23.07■■□□□ 1.28
SHMT1-209ENST00000582653 FAM177A1Q8N128 213 aaPredicted RBP23.07■■□□□ 1.28
SHMT1-209ENST00000582653 NECAB1Q8N987 351 aa23.07■■□□□ 1.28
SHMT1-209ENST00000582653 OXER1Q8TDS5 423 aa23.07■■□□□ 1.28
SHMT1-209ENST00000582653 POF1BQ8WVV4 589 aa23.07■■□□□ 1.28
SHMT1-209ENST00000582653 ZNF668Q96K58 619 aaPredicted RBP23.07■■□□□ 1.28
SHMT1-209ENST00000582653 MBOAT7Q96N66 472 aa23.07■■□□□ 1.28
SHMT1-209ENST00000582653 IGFLR1Q9H665 355 aa23.07■■□□□ 1.28
SHMT1-209ENST00000582653 ELAC1Q9H777 363 aaKnown RBP23.07■■□□□ 1.28
SHMT1-209ENST00000582653 MYH9P35579 1960 aaKnown RBP23.07■■□□□ 1.28
SHMT1-209ENST00000582653 SSTR3P32745 418 aaPredicted RBP23.06■■□□□ 1.28
SHMT1-209ENST00000582653 JAK3P52333 1124 aa23.06■■□□□ 1.28
SHMT1-209ENST00000582653 DLX2Q07687 328 aaPredicted RBP23.06■■□□□ 1.28
SHMT1-209ENST00000582653 DSC3Q14574 896 aa23.06■■□□□ 1.28
SHMT1-209ENST00000582653 LETM2Q2VYF4 491 aa23.06■■□□□ 1.28
SHMT1-209ENST00000582653 ETNPPLQ8TBG4 499 aa23.06■■□□□ 1.28
SHMT1-209ENST00000582653 PPP2R3CQ969Q6 453 aa23.06■■□□□ 1.28
SHMT1-209ENST00000582653 ADAMTS10Q9H324 1103 aa23.06■■□□□ 1.28
SHMT1-209ENST00000582653 TMEM161AQ9NX61 479 aa23.06■■□□□ 1.28
SHMT1-209ENST00000582653 DDX25Q9UHL0 483 aaKnown RBP23.06■■□□□ 1.28
SHMT1-209ENST00000582653 AKT3Q9Y243 479 aa23.06■■□□□ 1.28
SHMT1-209ENST00000582653 PCDHB12Q9Y5F1 795 aa23.06■■□□□ 1.28
SHMT1-209ENST00000582653 STK36Q9NRP7 1315 aa23.06■■□□□ 1.28
SHMT1-209ENST00000582653 TMEM150BA6NC51 233 aa23.05■■□□□ 1.28
SHMT1-209ENST00000582653 SLC37A4O43826 429 aa23.05■■□□□ 1.28
SHMT1-209ENST00000582653 LARGE1O95461 756 aa23.05■■□□□ 1.28
SHMT1-209ENST00000582653 SEC24BO95487 1268 aa23.05■■□□□ 1.28
SHMT1-209ENST00000582653 GTF2F1P35269 517 aaKnown RBP eCLIP23.05■■□□□ 1.28
SHMT1-209ENST00000582653 MOXD1Q6UVY6 613 aa23.05■■□□□ 1.28
SHMT1-209ENST00000582653 B3GNT9Q6UX72 402 aa23.05■■□□□ 1.28
SHMT1-209ENST00000582653 RDM1Q8NG50 284 aa23.05■■□□□ 1.28
SHMT1-209ENST00000582653 MAP7D2Q96T17 732 aa23.05■■□□□ 1.28
SHMT1-209ENST00000582653 ATP6V0A4Q9HBG4 840 aa23.05■■□□□ 1.28
SHMT1-209ENST00000582653 AAASQ9NRG9 546 aa23.05■■□□□ 1.28
SHMT1-209ENST00000582653 ORC3Q9UBD5 711 aaPredicted RBP23.05■■□□□ 1.28
SHMT1-209ENST00000582653 MYO7AQ13402 2215 aa23.05■■□□□ 1.28
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms