RNA–Protein interactions for RNA: ENST00000569406.5

CLK3-226, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 3,591 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-226ENST00000569406 CMA1P23946 247 aa11.72□□□□□ -0.53
CLK3-226ENST00000569406 MDM2Q00987 491 aaPredicted RBP11.72□□□□□ -0.53
CLK3-226ENST00000569406 TBX2Q13207 712 aaPredicted RBP11.72□□□□□ -0.53
CLK3-226ENST00000569406 TRAPPC11Q7Z392 1133 aa11.72□□□□□ -0.53
CLK3-226ENST00000569406 FBXO33Q7Z6M2 555 aa11.72□□□□□ -0.53
CLK3-226ENST00000569406 STIM2Q9P246 746 aa11.72□□□□□ -0.53
CLK3-226ENST00000569406 SRP68Q9UHB9 627 aaKnown RBP11.72□□□□□ -0.53
CLK3-226ENST00000569406 IVNS1ABPQ9Y6Y0 642 aa11.72□□□□□ -0.53
CLK3-226ENST00000569406 CCDC88AQ3V6T2 1871 aa11.71□□□□□ -0.53
CLK3-226ENST00000569406 A0A1W2PQ67 120 aa11.71□□□□□ -0.53
CLK3-226ENST00000569406 NUTM2BA6NNL0 878 aaPredicted RBP11.71□□□□□ -0.53
CLK3-226ENST00000569406 NUTM2EB1AL46 878 aaPredicted RBP11.71□□□□□ -0.53
CLK3-226ENST00000569406 ADAMTS3O15072 1205 aa11.71□□□□□ -0.53
CLK3-226ENST00000569406 ZBTB43O43298 467 aa11.71□□□□□ -0.53
CLK3-226ENST00000569406 ZCCHC18P0CG32 403 aa11.71□□□□□ -0.53
CLK3-226ENST00000569406 IDO1P14902 403 aa11.71□□□□□ -0.53
CLK3-226ENST00000569406 GPR162Q16538 588 aa11.71□□□□□ -0.53
CLK3-226ENST00000569406 TMEM67Q5HYA8 995 aa11.71□□□□□ -0.53
CLK3-226ENST00000569406 EMBQ6PCB8 327 aa11.71□□□□□ -0.53
CLK3-226ENST00000569406 NUTM2AQ8IVF1 878 aaPredicted RBP11.71□□□□□ -0.53
CLK3-226ENST00000569406 ANKK1Q8NFD2 765 aa11.71□□□□□ -0.53
CLK3-226ENST00000569406 KCNG4Q8TDN1 519 aa11.71□□□□□ -0.53
CLK3-226ENST00000569406 DNAJC1Q96KC8 554 aaKnown RBP11.71□□□□□ -0.53
CLK3-226ENST00000569406 CTAGE1Q96RT6 745 aa11.71□□□□□ -0.53
CLK3-226ENST00000569406 NAPBQ9H115 298 aa11.71□□□□□ -0.53
CLK3-226ENST00000569406 LUC7L2Q9Y383 392 aaKnown RBP11.71□□□□□ -0.53
CLK3-226ENST00000569406 SLC4A4Q9Y6R1 1079 aa11.71□□□□□ -0.53
CLK3-226ENST00000569406 DDX60LQ5H9U9 1706 aaKnown RBP11.71□□□□□ -0.53
CLK3-226ENST00000569406 KDM1AO60341 852 aa11.71□□□□□ -0.54
CLK3-226ENST00000569406 CSPG5O95196 566 aa11.71□□□□□ -0.54
CLK3-226ENST00000569406 SYKP43405 635 aa11.71□□□□□ -0.54
CLK3-226ENST00000569406 DYNLL1P63167 89 aaKnown RBP11.71□□□□□ -0.54
CLK3-226ENST00000569406 CAMK2BQ13554 666 aa11.71□□□□□ -0.54
CLK3-226ENST00000569406 LARP7Q4G0J3 582 aaKnown RBP eCLIP11.71□□□□□ -0.54
CLK3-226ENST00000569406 EARS2Q5JPH6 523 aaKnown RBP11.71□□□□□ -0.54
CLK3-226ENST00000569406 IQCEQ6IPM2 695 aa11.71□□□□□ -0.54
CLK3-226ENST00000569406 SART1O43290 800 aaKnown RBP11.71□□□□□ -0.54
CLK3-226ENST00000569406 CCR3P51677 355 aa11.71□□□□□ -0.54
CLK3-226ENST00000569406 KIF11P52732 1056 aa11.71□□□□□ -0.54
CLK3-226ENST00000569406 VAV2P52735 878 aa11.71□□□□□ -0.54
CLK3-226ENST00000569406 IRGCQ6NXR0 463 aa11.71□□□□□ -0.54
CLK3-226ENST00000569406 TRPM8Q7Z2W7 1104 aa11.71□□□□□ -0.54
CLK3-226ENST00000569406 CCDC127Q96BQ5 260 aa11.71□□□□□ -0.54
CLK3-226ENST00000569406 TUBE1Q9UJT0 475 aa11.71□□□□□ -0.54
CLK3-226ENST00000569406 UBOX5O94941 541 aa11.7□□□□□ -0.54
CLK3-226ENST00000569406 ASLP04424 464 aa11.7□□□□□ -0.54
CLK3-226ENST00000569406 UBTFL6P0CB48 400 aaPredicted RBP11.7□□□□□ -0.54
CLK3-226ENST00000569406 IGHMBP2P38935 993 aaKnown RBP11.7□□□□□ -0.54
CLK3-226ENST00000569406 GEMIN4P57678 1058 aaKnown RBP11.7□□□□□ -0.54
CLK3-226ENST00000569406 PPARAQ07869 468 aa11.7□□□□□ -0.54
CLK3-226ENST00000569406 RBL2Q08999 1139 aa11.7□□□□□ -0.54
CLK3-226ENST00000569406 LSAMPQ13449 338 aa11.7□□□□□ -0.54
CLK3-226ENST00000569406 USH1GQ495M9 461 aa11.7□□□□□ -0.54
CLK3-226ENST00000569406 RASGRP2Q7LDG7 609 aa11.7□□□□□ -0.54
CLK3-226ENST00000569406 RSPH1Q8WYR4 309 aa11.7□□□□□ -0.54
CLK3-226ENST00000569406 IFT43Q96FT9 208 aa11.7□□□□□ -0.54
CLK3-226ENST00000569406 EURLQ9NYK6 297 aa11.7□□□□□ -0.54
CLK3-226ENST00000569406 HESX1Q9UBX0 185 aa11.7□□□□□ -0.54
CLK3-226ENST00000569406 LTBP1Q14766 1721 aa11.7□□□□□ -0.54
CLK3-226ENST00000569406 TCF7P36402 384 aaPredicted RBP11.7□□□□□ -0.54
CLK3-226ENST00000569406 CCNG1P51959 295 aa11.7□□□□□ -0.54
CLK3-226ENST00000569406 SH3D19Q5HYK7 790 aa11.7□□□□□ -0.54
CLK3-226ENST00000569406 RESP18Q5W5W9 173 aa11.7□□□□□ -0.54
CLK3-226ENST00000569406 METTL16Q86W50 562 aaKnown RBP11.7□□□□□ -0.54
CLK3-226ENST00000569406 CRACR2BQ8N4Y2 399 aaPredicted RBP11.7□□□□□ -0.54
CLK3-226ENST00000569406 OXER1Q8TDS5 423 aa11.7□□□□□ -0.54
CLK3-226ENST00000569406 DYDC2Q96IM9 177 aa11.7□□□□□ -0.54
CLK3-226ENST00000569406 ELAC2Q9BQ52 826 aaKnown RBP11.7□□□□□ -0.54
CLK3-226ENST00000569406 PLVAPQ9BX97 442 aa11.7□□□□□ -0.54
CLK3-226ENST00000569406 SPATA16Q9BXB7 569 aa11.7□□□□□ -0.54
CLK3-226ENST00000569406 FAM192AQ9GZU8 254 aa11.7□□□□□ -0.54
CLK3-226ENST00000569406 UBR3Q6ZT12 1888 aa11.7□□□□□ -0.54
CLK3-226ENST00000569406 TTLL13PA6NNM8 815 aa11.69□□□□□ -0.54
CLK3-226ENST00000569406 BTBD18B2RXH4 712 aa11.69□□□□□ -0.54
CLK3-226ENST00000569406 PDE2AO00408 941 aaPredicted RBP11.69□□□□□ -0.54
CLK3-226ENST00000569406 PPP6R2O75170 966 aa11.69□□□□□ -0.54
CLK3-226ENST00000569406 MMP1P03956 469 aa11.69□□□□□ -0.54
CLK3-226ENST00000569406 TMED10P49755 219 aaKnown RBP11.69□□□□□ -0.54
CLK3-226ENST00000569406 HPCAP84074 193 aa11.69□□□□□ -0.54
CLK3-226ENST00000569406 UBE4AQ14139 1066 aa11.69□□□□□ -0.54
CLK3-226ENST00000569406 ZC2HC1CQ53FD0 456 aaPredicted RBP11.69□□□□□ -0.54
CLK3-226ENST00000569406 SYDE2Q5VT97 1194 aa11.69□□□□□ -0.54
CLK3-226ENST00000569406 ENAHQ8N8S7 591 aaPredicted RBP11.69□□□□□ -0.54
CLK3-226ENST00000569406 NSUN4Q96CB9 384 aaKnown RBP11.69□□□□□ -0.54
CLK3-226ENST00000569406 TUT1Q9H6E5 874 aaKnown RBP11.69□□□□□ -0.54
CLK3-226ENST00000569406 SAMD15Q9P1V8 674 aa11.69□□□□□ -0.54
CLK3-226ENST00000569406 IQCA1LA6NCM1 817 aa11.69□□□□□ -0.54
CLK3-226ENST00000569406 RGL2O15211 777 aa11.69□□□□□ -0.54
CLK3-226ENST00000569406 LCA5LO95447 670 aa11.69□□□□□ -0.54
CLK3-226ENST00000569406 LDHCP07864 332 aa11.69□□□□□ -0.54
CLK3-226ENST00000569406 VPS72Q15906 364 aa11.69□□□□□ -0.54
CLK3-226ENST00000569406 TRIM67Q6ZTA4 783 aa11.69□□□□□ -0.54
CLK3-226ENST00000569406 CEP70Q8NHQ1 597 aa11.69□□□□□ -0.54
CLK3-226ENST00000569406 DQX1Q8TE96 717 aaKnown RBP11.69□□□□□ -0.54
CLK3-226ENST00000569406 NMD3Q96D46 503 aaKnown RBP11.69□□□□□ -0.54
CLK3-226ENST00000569406 MPP4Q96JB8 637 aa11.69□□□□□ -0.54
CLK3-226ENST00000569406 MED15Q96RN5 788 aa11.69□□□□□ -0.54
CLK3-226ENST00000569406 HSFX1Q9UBD0 423 aa11.69□□□□□ -0.54
CLK3-226ENST00000569406 ZNF148Q9UQR1 794 aa11.69□□□□□ -0.54
CLK3-226ENST00000569406 GCOM1H8Y6P7 765 aaPredicted RBP11.69□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms