RNA–Protein interactions for RNA: ENST00000564574.5

CLN3-212, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,159 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-212ENST00000564574 ARVCFO00192 962 aa22.93■■□□□ 1.26
CLN3-212ENST00000564574 CYP11B2P19099 503 aa22.93■■□□□ 1.26
CLN3-212ENST00000564574 IGBP1P78318 339 aa22.93■■□□□ 1.26
CLN3-212ENST00000564574 ADAM17P78536 824 aa22.93■■□□□ 1.26
CLN3-212ENST00000564574 DHX8Q14562 1220 aaKnown RBP22.93■■□□□ 1.26
CLN3-212ENST00000564574 FAM47CQ5HY64 1035 aa22.93■■□□□ 1.26
CLN3-212ENST00000564574 C1orf186Q6ZWK4 172 aa22.93■■□□□ 1.26
CLN3-212ENST00000564574 RETREG2Q8NC44 543 aa22.93■■□□□ 1.26
CLN3-212ENST00000564574 MCPH1Q8NEM0 835 aa22.93■■□□□ 1.26
CLN3-212ENST00000564574 SH2D3AQ9BRG2 576 aa22.93■■□□□ 1.26
CLN3-212ENST00000564574 C11orf49Q9H6J7 331 aa22.93■■□□□ 1.26
CLN3-212ENST00000564574 PDLIM7Q9NR12 457 aa22.93■■□□□ 1.26
CLN3-212ENST00000564574 IGKV6-21A0A0C4DH24 114 aa22.92■■□□□ 1.26
CLN3-212ENST00000564574 MBLAC1A4D2B0 266 aaPredicted RBP22.92■■□□□ 1.26
CLN3-212ENST00000564574 USO1O60763 962 aaKnown RBP22.92■■□□□ 1.26
CLN3-212ENST00000564574 C22orf31O95567 290 aa22.92■■□□□ 1.26
CLN3-212ENST00000564574 GUCY2CP25092 1073 aa22.92■■□□□ 1.26
CLN3-212ENST00000564574 EMC2Q15006 297 aa22.92■■□□□ 1.26
CLN3-212ENST00000564574 CNNM4Q6P4Q7 775 aa22.92■■□□□ 1.26
CLN3-212ENST00000564574 MTHFD1LQ6UB35 978 aa22.92■■□□□ 1.26
CLN3-212ENST00000564574 TRAPPC12Q8WVT3 735 aa22.92■■□□□ 1.26
CLN3-212ENST00000564574 MTRQ99707 1265 aa22.92■■□□□ 1.26
CLN3-212ENST00000564574 C7orf25Q9BPX7 421 aa22.92■■□□□ 1.26
CLN3-212ENST00000564574 SENP6Q9GZR1 1112 aaPredicted RBP22.92■■□□□ 1.26
CLN3-212ENST00000564574 TUBE1Q9UJT0 475 aa22.92■■□□□ 1.26
CLN3-212ENST00000564574 MROH7Q68CQ1 1323 aa22.91■■□□□ 1.26
CLN3-212ENST00000564574 MYMKA6NI61 221 aa22.91■■□□□ 1.26
CLN3-212ENST00000564574 GTPBP6O43824 516 aaPredicted RBP22.91■■□□□ 1.26
CLN3-212ENST00000564574 KRT18P05783 430 aaKnown RBP22.91■■□□□ 1.26
CLN3-212ENST00000564574 KLRC1P26715 233 aa22.91■■□□□ 1.26
CLN3-212ENST00000564574 AFMP43652 599 aa22.91■■□□□ 1.26
CLN3-212ENST00000564574 KLHL40Q2TBA0 621 aa22.91■■□□□ 1.26
CLN3-212ENST00000564574 ARSHQ5FYA8 562 aa22.91■■□□□ 1.26
CLN3-212ENST00000564574 MARCH8Q5T0T0 291 aa22.91■■□□□ 1.26
CLN3-212ENST00000564574 C1orf53Q5VUE5 145 aa22.91■■□□□ 1.26
CLN3-212ENST00000564574 NECAB2Q7Z6G3 386 aa22.91■■□□□ 1.26
CLN3-212ENST00000564574 RUSC1Q9BVN2 902 aa22.91■■□□□ 1.26
CLN3-212ENST00000564574 TRIM9Q9C026 710 aa22.91■■□□□ 1.26
CLN3-212ENST00000564574 ODF2LQ9ULJ1 636 aa22.91■■□□□ 1.26
CLN3-212ENST00000564574 TMOD1P28289 359 aa22.9■■□□□ 1.26
CLN3-212ENST00000564574 CDK7P50613 346 aa22.9■■□□□ 1.26
CLN3-212ENST00000564574 SLC39A5Q6ZMH5 540 aa22.9■■□□□ 1.26
CLN3-212ENST00000564574 DIS3LQ8TF46 1054 aaKnown RBP22.9■■□□□ 1.26
CLN3-212ENST00000564574 TCP11Q8WWU5 503 aa22.9■■□□□ 1.26
CLN3-212ENST00000564574 DDX12PQ92771 950 aa22.9■■□□□ 1.26
CLN3-212ENST00000564574 STAMQ92783 540 aa22.9■■□□□ 1.26
CLN3-212ENST00000564574 PAWRQ96IZ0 340 aaKnown RBP22.9■■□□□ 1.26
CLN3-212ENST00000564574 CLSTN2Q9H4D0 955 aa22.9■■□□□ 1.26
CLN3-212ENST00000564574 XPNPEP1Q9NQW7 623 aa22.9■■□□□ 1.26
CLN3-212ENST00000564574 PCDHA2Q9Y5H9 948 aa22.9■■□□□ 1.26
CLN3-212ENST00000564574 CENPFP49454 3210 aa22.9■■□□□ 1.26
CLN3-212ENST00000564574 SMIM35A0A1B0GVV1 85 aa22.89■■□□□ 1.25
CLN3-212ENST00000564574 RPLP2P05387 115 aaKnown RBP22.89■■□□□ 1.25
CLN3-212ENST00000564574 DNM2P50570 870 aa22.89■■□□□ 1.25
CLN3-212ENST00000564574 SNX17Q15036 470 aa22.89■■□□□ 1.25
CLN3-212ENST00000564574 POSTNQ15063 836 aa22.89■■□□□ 1.25
CLN3-212ENST00000564574 GDF6Q6KF10 455 aaPredicted RBP22.89■■□□□ 1.25
CLN3-212ENST00000564574 LINC01465Q8N7H1 131 aa22.89■■□□□ 1.25
CLN3-212ENST00000564574 SYAP1Q96A49 352 aaPredicted RBP22.89■■□□□ 1.25
CLN3-212ENST00000564574 DRC1Q96MC2 740 aa22.89■■□□□ 1.25
CLN3-212ENST00000564574 NUP62CLQ9H1M0 184 aa22.89■■□□□ 1.25
CLN3-212ENST00000564574 CYP2C9P11712 490 aa22.88■■□□□ 1.25
CLN3-212ENST00000564574 EN2P19622 333 aaPredicted RBP22.88■■□□□ 1.25
CLN3-212ENST00000564574 MDM2Q00987 491 aaPredicted RBP22.88■■□□□ 1.25
CLN3-212ENST00000564574 GIT2Q14161 759 aa22.88■■□□□ 1.25
CLN3-212ENST00000564574 HIC1Q14526 733 aa22.88■■□□□ 1.25
CLN3-212ENST00000564574 IER5Q5VY09 327 aa22.88■■□□□ 1.25
CLN3-212ENST00000564574 EFCAB12Q6NXP0 572 aa22.88■■□□□ 1.25
CLN3-212ENST00000564574 TAF2Q6P1X5 1199 aa22.88■■□□□ 1.25
CLN3-212ENST00000564574 GRAMD1CQ8IYS0 662 aa22.88■■□□□ 1.25
CLN3-212ENST00000564574 PPP1R13LQ8WUF5 828 aa22.88■■□□□ 1.25
CLN3-212ENST00000564574 KIFAP3Q92845 792 aa22.88■■□□□ 1.25
CLN3-212ENST00000564574 DNAJC19Q96DA6 116 aa22.88■■□□□ 1.25
CLN3-212ENST00000564574 REEP2Q9BRK0 252 aa22.88■■□□□ 1.25
CLN3-212ENST00000564574 TREHO43280 583 aa22.87■■□□□ 1.25
CLN3-212ENST00000564574 HIP1RO75146 1068 aa22.87■■□□□ 1.25
CLN3-212ENST00000564574 TBCAO75347 108 aaKnown RBP22.87■■□□□ 1.25
CLN3-212ENST00000564574 RTP1P59025 263 aa22.87■■□□□ 1.25
CLN3-212ENST00000564574 DPYDQ12882 1025 aa22.87■■□□□ 1.25
CLN3-212ENST00000564574 CUL4BQ13620 913 aa22.87■■□□□ 1.25
CLN3-212ENST00000564574 PTGISQ16647 500 aa22.87■■□□□ 1.25
CLN3-212ENST00000564574 DYMQ7RTS9 669 aa22.87■■□□□ 1.25
CLN3-212ENST00000564574 METTL13Q8N6R0 699 aa22.87■■□□□ 1.25
CLN3-212ENST00000564574 SUGCTQ9HAC7 445 aa22.87■■□□□ 1.25
CLN3-212ENST00000564574 C17orf75Q9HAS0 396 aa22.87■■□□□ 1.25
CLN3-212ENST00000564574 PVALEFA0A1B0GWK0 134 aa22.86■■□□□ 1.25
CLN3-212ENST00000564574 TLR3O15455 904 aaKnown RBP22.86■■□□□ 1.25
CLN3-212ENST00000564574 TRAK2O60296 914 aa22.86■■□□□ 1.25
CLN3-212ENST00000564574 SMC2O95347 1197 aa22.86■■□□□ 1.25
CLN3-212ENST00000564574 PRR29P0C7W0 189 aa22.86■■□□□ 1.25
CLN3-212ENST00000564574 ASIC1P78348 528 aa22.86■■□□□ 1.25
CLN3-212ENST00000564574 ZNF200P98182 395 aaPredicted RBP22.86■■□□□ 1.25
CLN3-212ENST00000564574 PTK7Q13308 1070 aa22.86■■□□□ 1.25
CLN3-212ENST00000564574 CCDC183Q5T5S1 534 aa22.86■■□□□ 1.25
CLN3-212ENST00000564574 FAM102BQ5T8I3 360 aa22.86■■□□□ 1.25
CLN3-212ENST00000564574 UNC13DQ70J99 1090 aa22.86■■□□□ 1.25
CLN3-212ENST00000564574 UBE2Q1Q7Z7E8 422 aa22.86■■□□□ 1.25
CLN3-212ENST00000564574 SERINC5Q86VE9 423 aa22.86■■□□□ 1.25
CLN3-212ENST00000564574 CCDC65Q8IXS2 484 aa22.86■■□□□ 1.25
CLN3-212ENST00000564574 MAP7D2Q96T17 732 aa22.86■■□□□ 1.25
Retrieved 100 of 20,778 RNA–protein pairs in 49.1 ms