RNA–Protein interactions for RNA: ENST00000562754.1

VPS4A-202, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 2

Gene VPS4A, Length 633 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-202ENST00000562754 EMC2Q15006 297 aa18.44■□□□□ 0.54
VPS4A-202ENST00000562754 MARCH8Q5T0T0 291 aa18.44■□□□□ 0.54
VPS4A-202ENST00000562754 CCDC183Q5T5S1 534 aa18.44■□□□□ 0.54
VPS4A-202ENST00000562754 CNNM4Q6P4Q7 775 aa18.44■□□□□ 0.54
VPS4A-202ENST00000562754 DYMQ7RTS9 669 aa18.44■□□□□ 0.54
VPS4A-202ENST00000562754 DIS3LQ8TF46 1054 aaKnown RBP18.44■□□□□ 0.54
VPS4A-202ENST00000562754 DDX12PQ92771 950 aa18.44■□□□□ 0.54
VPS4A-202ENST00000562754 GLT1D1Q96MS3 346 aa18.44■□□□□ 0.54
VPS4A-202ENST00000562754 REEP2Q9BRK0 252 aa18.44■□□□□ 0.54
VPS4A-202ENST00000562754 RSPH10B2B2RC85 870 aa18.43■□□□□ 0.54
VPS4A-202ENST00000562754 MAFO75444 373 aaPredicted RBP18.43■□□□□ 0.54
VPS4A-202ENST00000562754 DGAT1O75907 488 aa18.43■□□□□ 0.54
VPS4A-202ENST00000562754 RSPH10BP0C881 870 aa18.43■□□□□ 0.54
VPS4A-202ENST00000562754 GUCY2CP25092 1073 aa18.43■□□□□ 0.54
VPS4A-202ENST00000562754 RFC5P40937 340 aa18.43■□□□□ 0.54
VPS4A-202ENST00000562754 POLGP54098 1239 aaPredicted RBP18.43■□□□□ 0.54
VPS4A-202ENST00000562754 SOX10P56693 466 aa18.43■□□□□ 0.54
VPS4A-202ENST00000562754 TBC1D8BQ0IIM8 1120 aa18.43■□□□□ 0.54
VPS4A-202ENST00000562754 MAPK7Q13164 816 aa18.43■□□□□ 0.54
VPS4A-202ENST00000562754 GIT2Q14161 759 aa18.43■□□□□ 0.54
VPS4A-202ENST00000562754 SESTD1Q86VW0 696 aa18.43■□□□□ 0.54
VPS4A-202ENST00000562754 DAW1Q8N136 415 aa18.43■□□□□ 0.54
VPS4A-202ENST00000562754 LINC01465Q8N7H1 131 aa18.43■□□□□ 0.54
VPS4A-202ENST00000562754 C7orf31Q8N865 590 aa18.43■□□□□ 0.54
VPS4A-202ENST00000562754 TMEM106CQ9BVX2 250 aa18.43■□□□□ 0.54
VPS4A-202ENST00000562754 ATP6V0A4Q9HBG4 840 aa18.43■□□□□ 0.54
VPS4A-202ENST00000562754 POLD4Q9HCU8 107 aa18.43■□□□□ 0.54
VPS4A-202ENST00000562754 STARD7Q9NQZ5 370 aa18.43■□□□□ 0.54
VPS4A-202ENST00000562754 KCND2Q9NZV8 630 aa18.43■□□□□ 0.54
VPS4A-202ENST00000562754 GTF2IRD1Q9UHL9 959 aa18.43■□□□□ 0.54
VPS4A-202ENST00000562754 NRCAMQ92823 1304 aa18.43■□□□□ 0.54
VPS4A-202ENST00000562754 IGKV6-21A0A0C4DH24 114 aa18.42■□□□□ 0.54
VPS4A-202ENST00000562754 C17orf102A2RUQ5 167 aa18.42■□□□□ 0.54
VPS4A-202ENST00000562754 MBLAC1A4D2B0 266 aaPredicted RBP18.42■□□□□ 0.54
VPS4A-202ENST00000562754 RRN3P2A6NIE6 340 aa18.42■□□□□ 0.54
VPS4A-202ENST00000562754 ASIC1P78348 528 aa18.42■□□□□ 0.54
VPS4A-202ENST00000562754 ZNF200P98182 395 aaPredicted RBP18.42■□□□□ 0.54
VPS4A-202ENST00000562754 AMPD3Q01432 767 aa18.42■□□□□ 0.54
VPS4A-202ENST00000562754 ITGA7Q13683 1181 aa18.42■□□□□ 0.54
VPS4A-202ENST00000562754 FAM47CQ5HY64 1035 aa18.42■□□□□ 0.54
VPS4A-202ENST00000562754 COL13A1Q5TAT6 717 aaPredicted RBP18.42■□□□□ 0.54
VPS4A-202ENST00000562754 NFRKBQ6P4R8 1299 aa18.42■□□□□ 0.54
VPS4A-202ENST00000562754 ANKLE1Q8NAG6 615 aa18.42■□□□□ 0.54
VPS4A-202ENST00000562754 SLC43A3Q8NBI5 491 aa18.42■□□□□ 0.54
VPS4A-202ENST00000562754 VTI1AQ96AJ9 217 aa18.42■□□□□ 0.54
VPS4A-202ENST00000562754 CCDC34Q96HJ3 373 aa18.42■□□□□ 0.54
VPS4A-202ENST00000562754 LRRC27Q9C0I9 530 aa18.42■□□□□ 0.54
VPS4A-202ENST00000562754 GPRC5CQ9NQ84 441 aa18.42■□□□□ 0.54
VPS4A-202ENST00000562754 A0A0U1RQG5 324 aaPredicted RBP18.41■□□□□ 0.54
VPS4A-202ENST00000562754 KLRC4O43908 158 aa18.41■□□□□ 0.54
VPS4A-202ENST00000562754 HIP1RO75146 1068 aa18.41■□□□□ 0.54
VPS4A-202ENST00000562754 KRT18P05783 430 aaKnown RBP18.41■□□□□ 0.54
VPS4A-202ENST00000562754 MYL1P05976 194 aa18.41■□□□□ 0.54
VPS4A-202ENST00000562754 COL6A1P12109 1028 aa18.41■□□□□ 0.54
VPS4A-202ENST00000562754 KLRC1P26715 233 aa18.41■□□□□ 0.54
VPS4A-202ENST00000562754 MKRN4PQ13434 485 aaPredicted RBP18.41■□□□□ 0.54
VPS4A-202ENST00000562754 DRP2Q13474 957 aa18.41■□□□□ 0.54
VPS4A-202ENST00000562754 GDF6Q6KF10 455 aaPredicted RBP18.41■□□□□ 0.54
VPS4A-202ENST00000562754 MTHFD1LQ6UB35 978 aa18.41■□□□□ 0.54
VPS4A-202ENST00000562754 RBM43Q6ZSC3 357 aaKnown RBP18.41■□□□□ 0.54
VPS4A-202ENST00000562754 MAEAQ7L5Y9 396 aa18.41■□□□□ 0.54
VPS4A-202ENST00000562754 LRRC71Q8N4P6 559 aa18.41■□□□□ 0.54
VPS4A-202ENST00000562754 MCPH1Q8NEM0 835 aa18.41■□□□□ 0.54
VPS4A-202ENST00000562754 SLC7A3Q8WY07 619 aa18.41■□□□□ 0.54
VPS4A-202ENST00000562754 TUBE1Q9UJT0 475 aa18.41■□□□□ 0.54
VPS4A-202ENST00000562754 FRMD3A2A2Y4 597 aa18.4■□□□□ 0.54
VPS4A-202ENST00000562754 MAGEB2O15479 319 aa18.4■□□□□ 0.54
VPS4A-202ENST00000562754 TREHO43280 583 aa18.4■□□□□ 0.54
VPS4A-202ENST00000562754 CLCN3P51790 818 aa18.4■□□□□ 0.54
VPS4A-202ENST00000562754 RUFY4Q6ZNE9 571 aa18.4■□□□□ 0.54
VPS4A-202ENST00000562754 SPATA20Q8TB22 786 aa18.4■□□□□ 0.54
VPS4A-202ENST00000562754 SYAP1Q96A49 352 aaPredicted RBP18.4■□□□□ 0.54
VPS4A-202ENST00000562754 TMEM143Q96AN5 459 aa18.4■□□□□ 0.54
VPS4A-202ENST00000562754 CTAGE1Q96RT6 745 aa18.4■□□□□ 0.54
VPS4A-202ENST00000562754 TIPINQ9BVW5 301 aa18.4■□□□□ 0.54
VPS4A-202ENST00000562754 POLR3FQ9H1D9 316 aaPredicted RBP18.4■□□□□ 0.54
VPS4A-202ENST00000562754 HOOK1Q9UJC3 728 aaKnown RBP18.4■□□□□ 0.54
VPS4A-202ENST00000562754 ODF2LQ9ULJ1 636 aa18.4■□□□□ 0.54
VPS4A-202ENST00000562754 PCDHA5Q9Y5H7 936 aa18.4■□□□□ 0.54
VPS4A-202ENST00000562754 RPN1P04843 607 aaKnown RBP18.39■□□□□ 0.53
VPS4A-202ENST00000562754 IDEP14735 1019 aa18.39■□□□□ 0.53
VPS4A-202ENST00000562754 ZNF131P52739 623 aa18.39■□□□□ 0.53
VPS4A-202ENST00000562754 PTPN11Q06124 597 aaPredicted RBP18.39■□□□□ 0.53
VPS4A-202ENST00000562754 FAM102BQ5T8I3 360 aa18.39■□□□□ 0.53
VPS4A-202ENST00000562754 EFCAB12Q6NXP0 572 aa18.39■□□□□ 0.53
VPS4A-202ENST00000562754 UNC13DQ70J99 1090 aa18.39■□□□□ 0.53
VPS4A-202ENST00000562754 ASAP3Q8TDY4 903 aa18.39■□□□□ 0.53
VPS4A-202ENST00000562754 BSNDQ8WZ55 320 aa18.39■□□□□ 0.53
VPS4A-202ENST00000562754 SENP6Q9GZR1 1112 aaPredicted RBP18.39■□□□□ 0.53
VPS4A-202ENST00000562754 SUGCTQ9HAC7 445 aa18.39■□□□□ 0.53
VPS4A-202ENST00000562754 SFI1A8K8P3 1242 aa18.38■□□□□ 0.53
VPS4A-202ENST00000562754 ARVCFO00192 962 aa18.38■□□□□ 0.53
VPS4A-202ENST00000562754 GAS2O43903 313 aaKnown RBP18.38■□□□□ 0.53
VPS4A-202ENST00000562754 TBCAO75347 108 aaKnown RBP18.38■□□□□ 0.53
VPS4A-202ENST00000562754 FAM13AO94988 1023 aa18.38■□□□□ 0.53
VPS4A-202ENST00000562754 GNAT1P11488 350 aa18.38■□□□□ 0.53
VPS4A-202ENST00000562754 ARL2P36404 184 aa18.38■□□□□ 0.53
VPS4A-202ENST00000562754 SARSP49591 514 aaKnown RBP18.38■□□□□ 0.53
VPS4A-202ENST00000562754 CDK7P50613 346 aa18.38■□□□□ 0.53
VPS4A-202ENST00000562754 EHHADHQ08426 723 aa18.38■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms