RNA–Protein interactions for RNA: ENST00000561381.5

USP3-220, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 2

Gene USP3, Length 979 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-220ENST00000561381 IGFLR1Q9H665 355 aa13.2□□□□□ -0.3
USP3-220ENST00000561381 NCOA5Q9HCD5 579 aaKnown RBP13.2□□□□□ -0.3
USP3-220ENST00000561381 VPS54Q9P1Q0 977 aa13.2□□□□□ -0.3
USP3-220ENST00000561381 MAFBQ9Y5Q3 323 aaPredicted RBP13.2□□□□□ -0.3
USP3-220ENST00000561381 COL1A2P08123 1366 aa13.2□□□□□ -0.3
USP3-220ENST00000561381 TBX10O75333 385 aa13.19□□□□□ -0.3
USP3-220ENST00000561381 RPS6KA5O75582 802 aa13.19□□□□□ -0.3
USP3-220ENST00000561381 VTNP04004 478 aa13.19□□□□□ -0.3
USP3-220ENST00000561381 STAG3L1P0CL83 205 aa13.19□□□□□ -0.3
USP3-220ENST00000561381 IRS1P35568 1242 aa13.19□□□□□ -0.3
USP3-220ENST00000561381 SARSP49591 514 aaKnown RBP13.19□□□□□ -0.3
USP3-220ENST00000561381 CCT2P78371 535 aaKnown RBP13.19□□□□□ -0.3
USP3-220ENST00000561381 SETQ01105 290 aaPredicted RBP13.19□□□□□ -0.3
USP3-220ENST00000561381 KIZQ2M2Z5 673 aa13.19□□□□□ -0.3
USP3-220ENST00000561381 PUS10Q3MIT2 529 aaKnown RBP13.19□□□□□ -0.3
USP3-220ENST00000561381 ZNF746Q6NUN9 644 aaPredicted RBP13.19□□□□□ -0.3
USP3-220ENST00000561381 FBXL16Q8N461 479 aa13.19□□□□□ -0.3
USP3-220ENST00000561381 KLHL23Q8NBE8 558 aa13.19□□□□□ -0.3
USP3-220ENST00000561381 SPPL3Q8TCT6 385 aa13.19□□□□□ -0.3
USP3-220ENST00000561381 CCDC12Q8WUD4 166 aaPredicted RBP13.19□□□□□ -0.3
USP3-220ENST00000561381 OSMRQ99650 979 aa13.19□□□□□ -0.3
USP3-220ENST00000561381 ADAM2Q99965 735 aa13.19□□□□□ -0.3
USP3-220ENST00000561381 TBC1D22BQ9NU19 505 aa13.19□□□□□ -0.3
USP3-220ENST00000561381 HCSTQ9UBK5 93 aa13.19□□□□□ -0.3
USP3-220ENST00000561381 GABBR1Q9UBS5 961 aa13.19□□□□□ -0.3
USP3-220ENST00000561381 LRFN2Q9ULH4 789 aa13.19□□□□□ -0.3
USP3-220ENST00000561381 ST3GAL5Q9UNP4 418 aa13.19□□□□□ -0.3
USP3-220ENST00000561381 PCDHGC5Q9Y5F6 944 aa13.19□□□□□ -0.3
USP3-220ENST00000561381 MYH9P35579 1960 aaKnown RBP13.19□□□□□ -0.3
USP3-220ENST00000561381 GPR37L1O60883 481 aa13.18□□□□□ -0.3
USP3-220ENST00000561381 GPR32O75388 356 aa13.18□□□□□ -0.3
USP3-220ENST00000561381 GNA11P29992 359 aa13.18□□□□□ -0.3
USP3-220ENST00000561381 PDIA3P30101 505 aaKnown RBP13.18□□□□□ -0.3
USP3-220ENST00000561381 CIITAP33076 1130 aa13.18□□□□□ -0.3
USP3-220ENST00000561381 CLCN3P51790 818 aa13.18□□□□□ -0.3
USP3-220ENST00000561381 AKAP17AQ02040 695 aaKnown RBP13.18□□□□□ -0.3
USP3-220ENST00000561381 ZP2Q05996 745 aa13.18□□□□□ -0.3
USP3-220ENST00000561381 FAM102BQ5T8I3 360 aa13.18□□□□□ -0.3
USP3-220ENST00000561381 ADGRD2Q7Z7M1 963 aa13.18□□□□□ -0.3
USP3-220ENST00000561381 FAM228AQ86W67 206 aa13.18□□□□□ -0.3
USP3-220ENST00000561381 METTL13Q8N6R0 699 aa13.18□□□□□ -0.3
USP3-220ENST00000561381 POF1BQ8WVV4 589 aa13.18□□□□□ -0.3
USP3-220ENST00000561381 BBXQ8WY36 941 aaPredicted RBP13.18□□□□□ -0.3
USP3-220ENST00000561381 P2RX5Q93086 422 aa13.18□□□□□ -0.3
USP3-220ENST00000561381 GJA10Q969M2 543 aa13.18□□□□□ -0.3
USP3-220ENST00000561381 MARVELD3Q96A59 401 aa13.18□□□□□ -0.3
USP3-220ENST00000561381 LARP6Q9BRS8 491 aaKnown RBP13.18□□□□□ -0.3
USP3-220ENST00000561381 RNF26Q9BY78 433 aaPredicted RBP13.18□□□□□ -0.3
USP3-220ENST00000561381 SAMM50Q9Y512 469 aa13.18□□□□□ -0.3
USP3-220ENST00000561381 PCDHB7Q9Y5E2 793 aa13.18□□□□□ -0.3
USP3-220ENST00000561381 PCDHA10Q9Y5I2 948 aa13.18□□□□□ -0.3
USP3-220ENST00000561381 DENND3A2RUS2 1198 aa13.17□□□□□ -0.3
USP3-220ENST00000561381 TBKBP1A7MCY6 615 aa13.17□□□□□ -0.3
USP3-220ENST00000561381 C9IYK1 514 aa13.17□□□□□ -0.3
USP3-220ENST00000561381 RIOK3O14730 519 aaKnown RBP13.17□□□□□ -0.3
USP3-220ENST00000561381 MSH4O15457 936 aa13.17□□□□□ -0.3
USP3-220ENST00000561381 NCK2O43639 380 aa13.17□□□□□ -0.3
USP3-220ENST00000561381 ZNF862O60290 1169 aa13.17□□□□□ -0.3
USP3-220ENST00000561381 PSAPP07602 524 aa13.17□□□□□ -0.3
USP3-220ENST00000561381 IFNAR1P17181 557 aa13.17□□□□□ -0.3
USP3-220ENST00000561381 PLA2G5P39877 138 aa13.17□□□□□ -0.3
USP3-220ENST00000561381 CRYBB1P53674 252 aaPredicted RBP13.17□□□□□ -0.3
USP3-220ENST00000561381 EVCP57679 992 aa13.17□□□□□ -0.3
USP3-220ENST00000561381 ADAM15Q13444 863 aa13.17□□□□□ -0.3
USP3-220ENST00000561381 TOB2Q14106 344 aaPredicted RBP13.17□□□□□ -0.3
USP3-220ENST00000561381 MCTP2Q6DN12 878 aa13.17□□□□□ -0.3
USP3-220ENST00000561381 SMAP1Q8IYB5 467 aaPredicted RBP13.17□□□□□ -0.3
USP3-220ENST00000561381 ZNF668Q96K58 619 aaPredicted RBP13.17□□□□□ -0.3
USP3-220ENST00000561381 TMEM121BQ9BXQ6 578 aaPredicted RBP13.17□□□□□ -0.3
USP3-220ENST00000561381 RGS18Q9NS28 235 aa13.17□□□□□ -0.3
USP3-220ENST00000561381 WDR81Q562E7 1941 aa13.17□□□□□ -0.3
USP3-220ENST00000561381 FNDC1Q4ZHG4 1894 aaPredicted RBP13.16□□□□□ -0.3
USP3-220ENST00000561381 GPR182O15218 404 aa13.16□□□□□ -0.3
USP3-220ENST00000561381 MBTPS2O43462 519 aa13.16□□□□□ -0.3
USP3-220ENST00000561381 REC8O95072 547 aa13.16□□□□□ -0.3
USP3-220ENST00000561381 FGFR1P11362 822 aa13.16□□□□□ -0.3
USP3-220ENST00000561381 PSMA5P28066 241 aa13.16□□□□□ -0.3
USP3-220ENST00000561381 DSC3Q14574 896 aa13.16□□□□□ -0.3
USP3-220ENST00000561381 UGCGQ16739 394 aa13.16□□□□□ -0.3
USP3-220ENST00000561381 NAALADL2Q58DX5 795 aa13.16□□□□□ -0.3
USP3-220ENST00000561381 EFCAB12Q6NXP0 572 aa13.16□□□□□ -0.3
USP3-220ENST00000561381 SLC24A5Q71RS6 500 aa13.16□□□□□ -0.3
USP3-220ENST00000561381 RBM23Q86U06 439 aaKnown RBP13.16□□□□□ -0.3
USP3-220ENST00000561381 ADHFE1Q8IWW8 467 aa13.16□□□□□ -0.3
USP3-220ENST00000561381 LRRC71Q8N4P6 559 aa13.16□□□□□ -0.3
USP3-220ENST00000561381 CCDC148Q8NFR7 591 aa13.16□□□□□ -0.3
USP3-220ENST00000561381 BICD2Q8TD16 824 aa13.16□□□□□ -0.3
USP3-220ENST00000561381 FAM122AQ96E09 287 aa13.16□□□□□ -0.3
USP3-220ENST00000561381 CCDC136Q96JN2 1154 aa13.16□□□□□ -0.3
USP3-220ENST00000561381 DISC1Q9NRI5 854 aa13.16□□□□□ -0.3
USP3-220ENST00000561381 C1orf112Q9NSG2 853 aa13.16□□□□□ -0.3
USP3-220ENST00000561381 TCEAL9Q9UHQ7 104 aa13.16□□□□□ -0.3
USP3-220ENST00000561381 FAM50BQ9Y247 325 aa13.16□□□□□ -0.3
USP3-220ENST00000561381 PLXNA4Q9HCM2 1894 aa13.16□□□□□ -0.3
USP3-220ENST00000561381 WDR64B1ANS9 1081 aa13.15□□□□□ -0.3
USP3-220ENST00000561381 CHMP2AO43633 222 aa13.15□□□□□ -0.3
USP3-220ENST00000561381 NRIP1P48552 1158 aa13.15□□□□□ -0.3
USP3-220ENST00000561381 NDUFV1P49821 464 aa13.15□□□□□ -0.3
USP3-220ENST00000561381 NLRP11P59045 1033 aaKnown RBP13.15□□□□□ -0.3
USP3-220ENST00000561381 NLRP5P59047 1200 aa13.15□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 18 ms