RNA–Protein interactions for RNA: ENST00000561242.1

TPM1-229, Transcript of tropomyosin 1, humanhuman

TSL 2

Gene TPM1, Length 673 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-229ENST00000561242 CSRNP2Q9H175 543 aa11.91□□□□□ -0.5
TPM1-229ENST00000561242 DBR1Q9UK59 544 aaKnown RBP11.91□□□□□ -0.5
TPM1-229ENST00000561242 PHLPP2Q6ZVD8 1323 aa11.9□□□□□ -0.5
TPM1-229ENST00000561242 DENND3A2RUS2 1198 aa11.9□□□□□ -0.5
TPM1-229ENST00000561242 TRIM43BA6NCK2 446 aa11.9□□□□□ -0.5
TPM1-229ENST00000561242 H0YCG3 227 aa11.9□□□□□ -0.5
TPM1-229ENST00000561242 EDIL3O43854 480 aa11.9□□□□□ -0.5
TPM1-229ENST00000561242 RPS6KA5O75582 802 aa11.9□□□□□ -0.5
TPM1-229ENST00000561242 ERLIN2O94905 339 aa11.9□□□□□ -0.5
TPM1-229ENST00000561242 EYA4O95677 639 aa11.9□□□□□ -0.5
TPM1-229ENST00000561242 SRGAP2CP0DJJ0 459 aa11.9□□□□□ -0.5
TPM1-229ENST00000561242 SFPQP23246 707 aaKnown RBP eCLIP11.9□□□□□ -0.5
TPM1-229ENST00000561242 PHKA2P46019 1235 aa11.9□□□□□ -0.5
TPM1-229ENST00000561242 NASPP49321 788 aaPredicted RBP11.9□□□□□ -0.5
TPM1-229ENST00000561242 ZNF618Q5T7W0 954 aa11.9□□□□□ -0.5
TPM1-229ENST00000561242 PLA2G4FQ68DD2 849 aa11.9□□□□□ -0.5
TPM1-229ENST00000561242 PADI6Q6TGC4 694 aa11.9□□□□□ -0.5
TPM1-229ENST00000561242 SH3RF1Q7Z6J0 888 aa11.9□□□□□ -0.5
TPM1-229ENST00000561242 HACE1Q8IYU2 909 aa11.9□□□□□ -0.5
TPM1-229ENST00000561242 C4orf32Q8N8J7 132 aa11.9□□□□□ -0.5
TPM1-229ENST00000561242 IQUBQ8NA54 791 aa11.9□□□□□ -0.5
TPM1-229ENST00000561242 LINC00301Q8NCQ3 95 aa11.9□□□□□ -0.5
TPM1-229ENST00000561242 TRAPPC12Q8WVT3 735 aa11.9□□□□□ -0.5
TPM1-229ENST00000561242 KIFAP3Q92845 792 aa11.9□□□□□ -0.5
TPM1-229ENST00000561242 TRIM43Q96BQ3 446 aaPredicted RBP11.9□□□□□ -0.5
TPM1-229ENST00000561242 RNPC3Q96LT9 517 aaKnown RBP11.9□□□□□ -0.5
TPM1-229ENST00000561242 GBP4Q96PP9 640 aa11.9□□□□□ -0.5
TPM1-229ENST00000561242 FTHL17Q9BXU8 183 aa11.9□□□□□ -0.5
TPM1-229ENST00000561242 CELF4Q9BZC1 486 aaKnown RBP11.9□□□□□ -0.5
TPM1-229ENST00000561242 BHMT2Q9H2M3 363 aa11.9□□□□□ -0.5
TPM1-229ENST00000561242 IL23AQ9NPF7 189 aa11.9□□□□□ -0.5
TPM1-229ENST00000561242 KCND2Q9NZV8 630 aa11.9□□□□□ -0.5
TPM1-229ENST00000561242 TBX21Q9UL17 535 aa11.9□□□□□ -0.5
TPM1-229ENST00000561242 LRFN2Q9ULH4 789 aa11.9□□□□□ -0.5
TPM1-229ENST00000561242 CDY2AQ9Y6F7 541 aa11.9□□□□□ -0.5
TPM1-229ENST00000561242 MBLAC1A4D2B0 266 aaPredicted RBP11.89□□□□□ -0.51
TPM1-229ENST00000561242 ZNF862O60290 1169 aa11.89□□□□□ -0.51
TPM1-229ENST00000561242 MAFO75444 373 aaPredicted RBP11.89□□□□□ -0.51
TPM1-229ENST00000561242 MED24O75448 989 aa11.89□□□□□ -0.51
TPM1-229ENST00000561242 FAM13AO94988 1023 aa11.89□□□□□ -0.51
TPM1-229ENST00000561242 AMHP03971 560 aa11.89□□□□□ -0.51
TPM1-229ENST00000561242 CSF2RAP15509 400 aa11.89□□□□□ -0.51
TPM1-229ENST00000561242 IBSPP21815 317 aaPredicted RBP11.89□□□□□ -0.51
TPM1-229ENST00000561242 ABCD1P33897 745 aa11.89□□□□□ -0.51
TPM1-229ENST00000561242 MAGEA10P43363 369 aaPredicted RBP11.89□□□□□ -0.51
TPM1-229ENST00000561242 CLCN3P51790 818 aa11.89□□□□□ -0.51
TPM1-229ENST00000561242 CRYBB1P53674 252 aaPredicted RBP11.89□□□□□ -0.51
TPM1-229ENST00000561242 NPEPPSP55786 919 aa11.89□□□□□ -0.51
TPM1-229ENST00000561242 NLRP11P59045 1033 aaKnown RBP11.89□□□□□ -0.51
TPM1-229ENST00000561242 TMEM62Q0P6H9 643 aa11.89□□□□□ -0.51
TPM1-229ENST00000561242 EMC2Q15006 297 aa11.89□□□□□ -0.51
TPM1-229ENST00000561242 UGCGQ16739 394 aa11.89□□□□□ -0.51
TPM1-229ENST00000561242 POTEGQ6S5H5 508 aa11.89□□□□□ -0.51
TPM1-229ENST00000561242 CHRDL2Q6WN34 429 aa11.89□□□□□ -0.51
TPM1-229ENST00000561242 RPAINQ86UA6 219 aa11.89□□□□□ -0.51
TPM1-229ENST00000561242 ZNF410Q86VK4 478 aa11.89□□□□□ -0.51
TPM1-229ENST00000561242 LRRC71Q8N4P6 559 aa11.89□□□□□ -0.51
TPM1-229ENST00000561242 ZNF579Q8NAF0 562 aaKnown RBP11.89□□□□□ -0.51
TPM1-229ENST00000561242 SCLYQ96I15 445 aa11.89□□□□□ -0.51
TPM1-229ENST00000561242 CCSER1Q9C0I3 900 aa11.89□□□□□ -0.51
TPM1-229ENST00000561242 C2orf40Q9H1Z8 148 aa11.89□□□□□ -0.51
TPM1-229ENST00000561242 CUEDC2Q9H467 287 aa11.89□□□□□ -0.51
TPM1-229ENST00000561242 STK17AQ9UEE5 414 aa11.89□□□□□ -0.51
TPM1-229ENST00000561242 RBBP6Q7Z6E9 1792 aaKnown RBP11.89□□□□□ -0.51
TPM1-229ENST00000561242 ABHD14A-ACY1A0A1B0GW23 586 aa11.88□□□□□ -0.51
TPM1-229ENST00000561242 LRRIQ4A6NIV6 560 aa11.88□□□□□ -0.51
TPM1-229ENST00000561242 CCDC169A6NNP5 214 aa11.88□□□□□ -0.51
TPM1-229ENST00000561242 WNT7AO00755 349 aa11.88□□□□□ -0.51
TPM1-229ENST00000561242 VTNP04004 478 aa11.88□□□□□ -0.51
TPM1-229ENST00000561242 PLA2G4BP0C869 781 aa11.88□□□□□ -0.51
TPM1-229ENST00000561242 STAG3L1P0CL83 205 aa11.88□□□□□ -0.51
TPM1-229ENST00000561242 SKIP12755 728 aa11.88□□□□□ -0.51
TPM1-229ENST00000561242 LIG1P18858 919 aa11.88□□□□□ -0.51
TPM1-229ENST00000561242 CDC25AP30304 524 aa11.88□□□□□ -0.51
TPM1-229ENST00000561242 DDIT3P35638 169 aa11.88□□□□□ -0.51
TPM1-229ENST00000561242 SPIRE1Q08AE8 756 aa11.88□□□□□ -0.51
TPM1-229ENST00000561242 STRN3Q13033 797 aa11.88□□□□□ -0.51
TPM1-229ENST00000561242 DMP1Q13316 513 aaPredicted RBP11.88□□□□□ -0.51
TPM1-229ENST00000561242 KIZQ2M2Z5 673 aa11.88□□□□□ -0.51
TPM1-229ENST00000561242 CNKSR3Q6P9H4 555 aa11.88□□□□□ -0.51
TPM1-229ENST00000561242 B3GNT9Q6UX72 402 aa11.88□□□□□ -0.51
TPM1-229ENST00000561242 STXBP4Q6ZWJ1 553 aa11.88□□□□□ -0.51
TPM1-229ENST00000561242 ANO5Q75V66 913 aa11.88□□□□□ -0.51
TPM1-229ENST00000561242 CATSPER4Q7RTX7 472 aa11.88□□□□□ -0.51
TPM1-229ENST00000561242 SLC17A8Q8NDX2 589 aa11.88□□□□□ -0.51
TPM1-229ENST00000561242 SYMPKQ92797 1274 aaKnown RBP11.88□□□□□ -0.51
TPM1-229ENST00000561242 TMEM143Q96AN5 459 aa11.88□□□□□ -0.51
TPM1-229ENST00000561242 PPP1R16BQ96T49 567 aa11.88□□□□□ -0.51
TPM1-229ENST00000561242 SH2D3AQ9BRG2 576 aa11.88□□□□□ -0.51
TPM1-229ENST00000561242 IFIH1Q9BYX4 1025 aaKnown RBP11.88□□□□□ -0.51
TPM1-229ENST00000561242 PANK2Q9BZ23 570 aa11.88□□□□□ -0.51
TPM1-229ENST00000561242 LARSQ9P2J5 1176 aaKnown RBP11.88□□□□□ -0.51
TPM1-229ENST00000561242 USP25Q9UHP3 1055 aa11.88□□□□□ -0.51
TPM1-229ENST00000561242 MSRAQ9UJ68 235 aa11.88□□□□□ -0.51
TPM1-229ENST00000561242 TELO2Q9Y4R8 837 aa11.88□□□□□ -0.51
TPM1-229ENST00000561242 COL4A3BPQ9Y5P4 624 aa11.88□□□□□ -0.51
TPM1-229ENST00000561242 SLC4A7Q9Y6M7 1214 aa11.88□□□□□ -0.51
TPM1-229ENST00000561242 SQORQ9Y6N5 450 aa11.88□□□□□ -0.51
TPM1-229ENST00000561242 E9PMD0 336 aa11.87□□□□□ -0.51
TPM1-229ENST00000561242 INO80B-WBP1J3KQ70 363 aa11.87□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 42.3 ms